diff --git a/HISTORY.rst b/HISTORY.rst
index 9339c0e85a625d00b8e2b67d796ca5a069b31488..ccfff15459e1eac379cbe8e44a9ebc9b7e980e0a 100644
--- a/HISTORY.rst
+++ b/HISTORY.rst
@@ -6,10 +6,21 @@ History
 .. to_doc
 
 ---------------------
-0.9.0.dev0
+0.9.0 (2019-04-12)
 ---------------------
-
     
+* Add configuration parameter to limit stream size read from disk. `Pull
+  Request 157`_
+* Pass full job status for failed and lost jobs. `Pull Request 159`_
+* Improve message handling if problems occur during job setup/staging. `Pull
+  Request 160`_
+* Rework preprocessing job state to improve restartability and reduce job loss.
+  **This change should be applied while no jobs are running.**
+  `Pull Request 164`_
+* Add support for overriding config through environment variables (thanks to
+  @nuwang). `Pull Request 165`_
+* Minor docs updates (thanks to @afgane). `Pull Request 170`_
+* Python 3 fixes in Pulsar client (thanks to @mvdbeek). `Pull Request 172`_
 
 ---------------------
 0.8.3 (2018-02-08)
@@ -186,6 +197,13 @@ History
 
 
 .. github_links
+.. _Pull Request 172: https://github.com/galaxyproject/pulsar/pull/172
+.. _Pull Request 170: https://github.com/galaxyproject/pulsar/pull/170
+.. _Pull Request 165: https://github.com/galaxyproject/pulsar/pull/165
+.. _Pull Request 164: https://github.com/galaxyproject/pulsar/pull/164
+.. _Pull Request 160: https://github.com/galaxyproject/pulsar/pull/160
+.. _Pull Request 159: https://github.com/galaxyproject/pulsar/pull/159
+.. _Pull Request 157: https://github.com/galaxyproject/pulsar/pull/157
 .. _Pull Request 156: https://github.com/galaxyproject/pulsar/pull/156
 .. _Pull Request 145: https://github.com/galaxyproject/pulsar/pull/145
 .. _Pull Request 146: https://github.com/galaxyproject/pulsar/pull/146
diff --git a/docs/pulsar.cache.rst b/docs/pulsar.cache.rst
index f729d5f47cb171e583eb6b1df31b825949816e65..ccfe4b0576e77aed4fa1dc6d26b9ecf706f7e166 100644
--- a/docs/pulsar.cache.rst
+++ b/docs/pulsar.cache.rst
@@ -1,19 +1,19 @@
-pulsar\.cache package
-=====================
+pulsar.cache package
+====================
 
 Submodules
 ----------
 
-pulsar\.cache\.persistence module
----------------------------------
+pulsar.cache.persistence module
+-------------------------------
 
 .. automodule:: pulsar.cache.persistence
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.cache\.util module
---------------------------
+pulsar.cache.util module
+------------------------
 
 .. automodule:: pulsar.cache.util
     :members:
diff --git a/docs/pulsar.client.rst b/docs/pulsar.client.rst
index 01fc75ee248b8a4cf2a58874b02f4b841d84f634..dd006a592f499e9f899fbe1fec6129bc641cd0d7 100644
--- a/docs/pulsar.client.rst
+++ b/docs/pulsar.client.rst
@@ -1,5 +1,5 @@
-pulsar\.client package
-======================
+pulsar.client package
+=====================
 
 Subpackages
 -----------
@@ -13,120 +13,120 @@ Subpackages
 Submodules
 ----------
 
-pulsar\.client\.action\_mapper module
--------------------------------------
+pulsar.client.action\_mapper module
+-----------------------------------
 
 .. automodule:: pulsar.client.action_mapper
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.amqp\_exchange module
--------------------------------------
+pulsar.client.amqp\_exchange module
+-----------------------------------
 
 .. automodule:: pulsar.client.amqp_exchange
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.amqp\_exchange\_factory module
-----------------------------------------------
+pulsar.client.amqp\_exchange\_factory module
+--------------------------------------------
 
 .. automodule:: pulsar.client.amqp_exchange_factory
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.client module
------------------------------
+pulsar.client.client module
+---------------------------
 
 .. automodule:: pulsar.client.client
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.config\_util module
------------------------------------
+pulsar.client.config\_util module
+---------------------------------
 
 .. automodule:: pulsar.client.config_util
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.decorators module
----------------------------------
+pulsar.client.decorators module
+-------------------------------
 
 .. automodule:: pulsar.client.decorators
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.destination module
-----------------------------------
+pulsar.client.destination module
+--------------------------------
 
 .. automodule:: pulsar.client.destination
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.exceptions module
----------------------------------
+pulsar.client.exceptions module
+-------------------------------
 
 .. automodule:: pulsar.client.exceptions
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.interface module
---------------------------------
+pulsar.client.interface module
+------------------------------
 
 .. automodule:: pulsar.client.interface
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.job\_directory module
--------------------------------------
+pulsar.client.job\_directory module
+-----------------------------------
 
 .. automodule:: pulsar.client.job_directory
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.manager module
-------------------------------
+pulsar.client.manager module
+----------------------------
 
 .. automodule:: pulsar.client.manager
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.object\_client module
--------------------------------------
+pulsar.client.object\_client module
+-----------------------------------
 
 .. automodule:: pulsar.client.object_client
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.path\_mapper module
------------------------------------
+pulsar.client.path\_mapper module
+---------------------------------
 
 .. automodule:: pulsar.client.path_mapper
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.setup\_handler module
--------------------------------------
+pulsar.client.setup\_handler module
+-----------------------------------
 
 .. automodule:: pulsar.client.setup_handler
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.util module
----------------------------
+pulsar.client.util module
+-------------------------
 
 .. automodule:: pulsar.client.util
     :members:
diff --git a/docs/pulsar.client.staging.rst b/docs/pulsar.client.staging.rst
index d8ca98108d3afc2c13347ae2da97c297a547b7f5..98dc2c4cd44ec369b1b53fc0a1ed4f1c72df9711 100644
--- a/docs/pulsar.client.staging.rst
+++ b/docs/pulsar.client.staging.rst
@@ -1,19 +1,19 @@
-pulsar\.client\.staging package
-===============================
+pulsar.client.staging package
+=============================
 
 Submodules
 ----------
 
-pulsar\.client\.staging\.down module
-------------------------------------
+pulsar.client.staging.down module
+---------------------------------
 
 .. automodule:: pulsar.client.staging.down
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.staging\.up module
-----------------------------------
+pulsar.client.staging.up module
+-------------------------------
 
 .. automodule:: pulsar.client.staging.up
     :members:
diff --git a/docs/pulsar.client.test.rst b/docs/pulsar.client.test.rst
index 79b013c515fd5fdd0ff7e7330fd6c4b7cc62ebcc..ff69f5d5c5b87dfc1f0ee2102d8430a06521642e 100644
--- a/docs/pulsar.client.test.rst
+++ b/docs/pulsar.client.test.rst
@@ -1,19 +1,19 @@
-pulsar\.client\.test package
-============================
+pulsar.client.test package
+==========================
 
 Submodules
 ----------
 
-pulsar\.client\.test\.check module
-----------------------------------
+pulsar.client.test.check module
+-------------------------------
 
 .. automodule:: pulsar.client.test.check
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.test\.test\_common module
------------------------------------------
+pulsar.client.test.test\_common module
+--------------------------------------
 
 .. automodule:: pulsar.client.test.test_common
     :members:
diff --git a/docs/pulsar.client.transport.rst b/docs/pulsar.client.transport.rst
index c727d63650bbebc0744c7036b5a0160ebc052982..c637585aa5edd8e6e6ca5e8954a3b7d83e1d3f60 100644
--- a/docs/pulsar.client.transport.rst
+++ b/docs/pulsar.client.transport.rst
@@ -1,43 +1,43 @@
-pulsar\.client\.transport package
-=================================
+pulsar.client.transport package
+===============================
 
 Submodules
 ----------
 
-pulsar\.client\.transport\.curl module
---------------------------------------
+pulsar.client.transport.curl module
+-----------------------------------
 
 .. automodule:: pulsar.client.transport.curl
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.transport\.poster module
-----------------------------------------
+pulsar.client.transport.poster module
+-------------------------------------
 
 .. automodule:: pulsar.client.transport.poster
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.transport\.requests module
-------------------------------------------
+pulsar.client.transport.requests module
+---------------------------------------
 
 .. automodule:: pulsar.client.transport.requests
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.transport\.ssh module
--------------------------------------
+pulsar.client.transport.ssh module
+----------------------------------
 
 .. automodule:: pulsar.client.transport.ssh
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.client\.transport\.standard module
-------------------------------------------
+pulsar.client.transport.standard module
+---------------------------------------
 
 .. automodule:: pulsar.client.transport.standard
     :members:
diff --git a/docs/pulsar.managers.base.rst b/docs/pulsar.managers.base.rst
index c700e9f2ec16924efcea6989933a10e8c525e4ab..1eef37d04ed92ab8d95a4033482fc531e28cd7ef 100644
--- a/docs/pulsar.managers.base.rst
+++ b/docs/pulsar.managers.base.rst
@@ -1,27 +1,27 @@
-pulsar\.managers\.base package
-==============================
+pulsar.managers.base package
+============================
 
 Submodules
 ----------
 
-pulsar\.managers\.base\.base\_drmaa module
-------------------------------------------
+pulsar.managers.base.base\_drmaa module
+---------------------------------------
 
 .. automodule:: pulsar.managers.base.base_drmaa
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.base\.directory module
-----------------------------------------
+pulsar.managers.base.directory module
+-------------------------------------
 
 .. automodule:: pulsar.managers.base.directory
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.base\.external module
----------------------------------------
+pulsar.managers.base.external module
+------------------------------------
 
 .. automodule:: pulsar.managers.base.external
     :members:
diff --git a/docs/pulsar.managers.rst b/docs/pulsar.managers.rst
index ff4e9581e3eade4441c53ca52a8a6c1c809e802a..bfe46212eb32993c2d51eb43f9d957dc741fc483 100644
--- a/docs/pulsar.managers.rst
+++ b/docs/pulsar.managers.rst
@@ -1,5 +1,5 @@
-pulsar\.managers package
-========================
+pulsar.managers package
+=======================
 
 Subpackages
 -----------
@@ -13,80 +13,80 @@ Subpackages
 Submodules
 ----------
 
-pulsar\.managers\.queued module
--------------------------------
+pulsar.managers.queued module
+-----------------------------
 
 .. automodule:: pulsar.managers.queued
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_cli module
-------------------------------------
+pulsar.managers.queued\_cli module
+----------------------------------
 
 .. automodule:: pulsar.managers.queued_cli
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_condor module
----------------------------------------
+pulsar.managers.queued\_condor module
+-------------------------------------
 
 .. automodule:: pulsar.managers.queued_condor
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_drmaa module
---------------------------------------
+pulsar.managers.queued\_drmaa module
+------------------------------------
 
 .. automodule:: pulsar.managers.queued_drmaa
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_drmaa\_xsede module
----------------------------------------------
+pulsar.managers.queued\_drmaa\_xsede module
+-------------------------------------------
 
 .. automodule:: pulsar.managers.queued_drmaa_xsede
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_external\_drmaa module
-------------------------------------------------
+pulsar.managers.queued\_external\_drmaa module
+----------------------------------------------
 
 .. automodule:: pulsar.managers.queued_external_drmaa
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.queued\_pbs module
-------------------------------------
+pulsar.managers.queued\_pbs module
+----------------------------------
 
 .. automodule:: pulsar.managers.queued_pbs
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.stateful module
----------------------------------
+pulsar.managers.stateful module
+-------------------------------
 
 .. automodule:: pulsar.managers.stateful
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.status module
--------------------------------
+pulsar.managers.status module
+-----------------------------
 
 .. automodule:: pulsar.managers.status
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.unqueued module
----------------------------------
+pulsar.managers.unqueued module
+-------------------------------
 
 .. automodule:: pulsar.managers.unqueued
     :members:
diff --git a/docs/pulsar.managers.staging.rst b/docs/pulsar.managers.staging.rst
index 8931c67d126d7ce359f67723dbb026187809f007..0f14f5af3b7723ee03e46e10a8fa277cede6e1de 100644
--- a/docs/pulsar.managers.staging.rst
+++ b/docs/pulsar.managers.staging.rst
@@ -1,19 +1,19 @@
-pulsar\.managers\.staging package
-=================================
+pulsar.managers.staging package
+===============================
 
 Submodules
 ----------
 
-pulsar\.managers\.staging\.post module
---------------------------------------
+pulsar.managers.staging.post module
+-----------------------------------
 
 .. automodule:: pulsar.managers.staging.post
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.staging\.pre module
--------------------------------------
+pulsar.managers.staging.pre module
+----------------------------------
 
 .. automodule:: pulsar.managers.staging.pre
     :members:
diff --git a/docs/pulsar.managers.util.cli.job.rst b/docs/pulsar.managers.util.cli.job.rst
index cad20090a88363234df486b8a5762b74dae7dadd..45383ff58e1867b5bf23c0b4f467d0e9540ba408 100644
--- a/docs/pulsar.managers.util.cli.job.rst
+++ b/docs/pulsar.managers.util.cli.job.rst
@@ -1,27 +1,27 @@
-pulsar\.managers\.util\.cli\.job package
-========================================
+pulsar.managers.util.cli.job package
+====================================
 
 Submodules
 ----------
 
-pulsar\.managers\.util\.cli\.job\.slurm module
-----------------------------------------------
+pulsar.managers.util.cli.job.slurm module
+-----------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.job.slurm
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.cli\.job\.slurm\_torque module
-------------------------------------------------------
+pulsar.managers.util.cli.job.slurm\_torque module
+-------------------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.job.slurm_torque
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.cli\.job\.torque module
------------------------------------------------
+pulsar.managers.util.cli.job.torque module
+------------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.job.torque
     :members:
diff --git a/docs/pulsar.managers.util.cli.rst b/docs/pulsar.managers.util.cli.rst
index b5b2b6bb8228e00863d5d6bb8f47d6dac061984e..39130e8df86bc723e0b91b5bd7be1c7633843b57 100644
--- a/docs/pulsar.managers.util.cli.rst
+++ b/docs/pulsar.managers.util.cli.rst
@@ -1,5 +1,5 @@
-pulsar\.managers\.util\.cli package
-===================================
+pulsar.managers.util.cli package
+================================
 
 Subpackages
 -----------
@@ -12,8 +12,8 @@ Subpackages
 Submodules
 ----------
 
-pulsar\.managers\.util\.cli\.factory module
--------------------------------------------
+pulsar.managers.util.cli.factory module
+---------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.factory
     :members:
diff --git a/docs/pulsar.managers.util.cli.shell.rst b/docs/pulsar.managers.util.cli.shell.rst
index 7be4bb9a5de71f997a8a86fb464515afa650787b..c9a387229c743d0c4e3ba141e444b717612aa398 100644
--- a/docs/pulsar.managers.util.cli.shell.rst
+++ b/docs/pulsar.managers.util.cli.shell.rst
@@ -1,19 +1,19 @@
-pulsar\.managers\.util\.cli\.shell package
-==========================================
+pulsar.managers.util.cli.shell package
+======================================
 
 Submodules
 ----------
 
-pulsar\.managers\.util\.cli\.shell\.local module
-------------------------------------------------
+pulsar.managers.util.cli.shell.local module
+-------------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.shell.local
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.cli\.shell\.rsh module
-----------------------------------------------
+pulsar.managers.util.cli.shell.rsh module
+-----------------------------------------
 
 .. automodule:: pulsar.managers.util.cli.shell.rsh
     :members:
diff --git a/docs/pulsar.managers.util.condor.rst b/docs/pulsar.managers.util.condor.rst
index e3af0bc7b78218abb6662d98d0e481d2f293ff46..c99f10c7c65c837710de4b325b1ee12f44563a0e 100644
--- a/docs/pulsar.managers.util.condor.rst
+++ b/docs/pulsar.managers.util.condor.rst
@@ -1,5 +1,5 @@
-pulsar\.managers\.util\.condor package
-======================================
+pulsar.managers.util.condor package
+===================================
 
 Module contents
 ---------------
diff --git a/docs/pulsar.managers.util.drmaa.rst b/docs/pulsar.managers.util.drmaa.rst
index e4c7ecfd24a098d90b62d172200476f7ba19cc52..3ac16f8875e4ecb7cd63f14f009a2e93833c250a 100644
--- a/docs/pulsar.managers.util.drmaa.rst
+++ b/docs/pulsar.managers.util.drmaa.rst
@@ -1,5 +1,5 @@
-pulsar\.managers\.util\.drmaa package
-=====================================
+pulsar.managers.util.drmaa package
+==================================
 
 Module contents
 ---------------
diff --git a/docs/pulsar.managers.util.job_script.rst b/docs/pulsar.managers.util.job_script.rst
index 913a1fda32d1bf1d64a4ea082bf69ec1180795e6..226aa8a33da52f9abb85b0f3b2d5d4a7249f2bcc 100644
--- a/docs/pulsar.managers.util.job_script.rst
+++ b/docs/pulsar.managers.util.job_script.rst
@@ -1,5 +1,5 @@
-pulsar\.managers\.util\.job\_script package
-===========================================
+pulsar.managers.util.job\_script package
+========================================
 
 Module contents
 ---------------
diff --git a/docs/pulsar.managers.util.rst b/docs/pulsar.managers.util.rst
index 1893800c9c8a44588c2bcb44ef230fc3323dba24..d970ed3df1818e5b498f78956e6e29b13db4f902 100644
--- a/docs/pulsar.managers.util.rst
+++ b/docs/pulsar.managers.util.rst
@@ -1,5 +1,5 @@
-pulsar\.managers\.util package
-==============================
+pulsar.managers.util package
+============================
 
 Subpackages
 -----------
@@ -14,40 +14,40 @@ Subpackages
 Submodules
 ----------
 
-pulsar\.managers\.util\.env module
-----------------------------------
+pulsar.managers.util.env module
+-------------------------------
 
 .. automodule:: pulsar.managers.util.env
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.external module
----------------------------------------
+pulsar.managers.util.external module
+------------------------------------
 
 .. automodule:: pulsar.managers.util.external
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.kill module
------------------------------------
+pulsar.managers.util.kill module
+--------------------------------
 
 .. automodule:: pulsar.managers.util.kill
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.retry module
-------------------------------------
+pulsar.managers.util.retry module
+---------------------------------
 
 .. automodule:: pulsar.managers.util.retry
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.managers\.util\.sudo module
------------------------------------
+pulsar.managers.util.sudo module
+--------------------------------
 
 .. automodule:: pulsar.managers.util.sudo
     :members:
diff --git a/docs/pulsar.mesos.rst b/docs/pulsar.mesos.rst
index 62e88a06bebeb6eed479bc45b1d04fff37a82a64..9ffefb4ff4968dfb3bc0332ef67bb7126bb93e78 100644
--- a/docs/pulsar.mesos.rst
+++ b/docs/pulsar.mesos.rst
@@ -1,11 +1,11 @@
-pulsar\.mesos package
-=====================
+pulsar.mesos package
+====================
 
 Submodules
 ----------
 
-pulsar\.mesos\.framework module
--------------------------------
+pulsar.mesos.framework module
+-----------------------------
 
 .. automodule:: pulsar.mesos.framework
     :members:
diff --git a/docs/pulsar.messaging.rst b/docs/pulsar.messaging.rst
index 7f164d3502b273b3015d63a94e09833558fa73b3..9d32d5b92cf664c9b4e3fcfe91147f0fa5327705 100644
--- a/docs/pulsar.messaging.rst
+++ b/docs/pulsar.messaging.rst
@@ -1,11 +1,11 @@
-pulsar\.messaging package
-=========================
+pulsar.messaging package
+========================
 
 Submodules
 ----------
 
-pulsar\.messaging\.bind\_amqp module
-------------------------------------
+pulsar.messaging.bind\_amqp module
+----------------------------------
 
 .. automodule:: pulsar.messaging.bind_amqp
     :members:
diff --git a/docs/pulsar.rst b/docs/pulsar.rst
index 4f5d6d84d9bf464f9e6dbe4f7f07b245a94e0c24..e75a69521b0f60f2a896573f35468bae2e027041 100644
--- a/docs/pulsar.rst
+++ b/docs/pulsar.rst
@@ -19,40 +19,40 @@ Subpackages
 Submodules
 ----------
 
-pulsar\.core module
--------------------
+pulsar.core module
+------------------
 
 .. automodule:: pulsar.core
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.locks module
---------------------
+pulsar.locks module
+-------------------
 
 .. automodule:: pulsar.locks
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.main module
--------------------
+pulsar.main module
+------------------
 
 .. automodule:: pulsar.main
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.manager\_endpoint\_util module
---------------------------------------
+pulsar.manager\_endpoint\_util module
+-------------------------------------
 
 .. automodule:: pulsar.manager_endpoint_util
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.manager\_factory module
--------------------------------
+pulsar.manager\_factory module
+------------------------------
 
 .. automodule:: pulsar.manager_factory
     :members:
diff --git a/docs/pulsar.scripts.rst b/docs/pulsar.scripts.rst
index 0507d96fc72ac812829f9cf8cc83348f0d8d1e1e..06d50230366f9e06f9ce9eb6aacf65e4ebe08c66 100644
--- a/docs/pulsar.scripts.rst
+++ b/docs/pulsar.scripts.rst
@@ -1,75 +1,83 @@
-pulsar\.scripts package
-=======================
+pulsar.scripts package
+======================
 
 Submodules
 ----------
 
-pulsar\.scripts\.chown\_working\_directory module
--------------------------------------------------
+pulsar.scripts.bootstrap module
+-------------------------------
+
+.. automodule:: pulsar.scripts.bootstrap
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
+pulsar.scripts.chown\_working\_directory module
+-----------------------------------------------
 
 .. automodule:: pulsar.scripts.chown_working_directory
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.config module
-------------------------------
+pulsar.scripts.config module
+----------------------------
 
 .. automodule:: pulsar.scripts.config
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.drmaa\_kill module
------------------------------------
+pulsar.scripts.drmaa\_kill module
+---------------------------------
 
 .. automodule:: pulsar.scripts.drmaa_kill
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.drmaa\_launch module
--------------------------------------
+pulsar.scripts.drmaa\_launch module
+-----------------------------------
 
 .. automodule:: pulsar.scripts.drmaa_launch
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.mesos\_executor module
----------------------------------------
+pulsar.scripts.mesos\_executor module
+-------------------------------------
 
 .. automodule:: pulsar.scripts.mesos_executor
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.mesos\_framework module
-----------------------------------------
+pulsar.scripts.mesos\_framework module
+--------------------------------------
 
 .. automodule:: pulsar.scripts.mesos_framework
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.run module
----------------------------
+pulsar.scripts.run module
+-------------------------
 
 .. automodule:: pulsar.scripts.run
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.submit module
-------------------------------
+pulsar.scripts.submit module
+----------------------------
 
 .. automodule:: pulsar.scripts.submit
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.scripts\.submit\_util module
-------------------------------------
+pulsar.scripts.submit\_util module
+----------------------------------
 
 .. automodule:: pulsar.scripts.submit_util
     :members:
diff --git a/docs/pulsar.tools.rst b/docs/pulsar.tools.rst
index a514adb4ea4dbba8d7ed8c3e3f5a0560dbbc88b7..ee94cca8fd38ebf7981673739b1a27843e0de9db 100644
--- a/docs/pulsar.tools.rst
+++ b/docs/pulsar.tools.rst
@@ -1,27 +1,27 @@
-pulsar\.tools package
-=====================
+pulsar.tools package
+====================
 
 Submodules
 ----------
 
-pulsar\.tools\.authorization module
------------------------------------
+pulsar.tools.authorization module
+---------------------------------
 
 .. automodule:: pulsar.tools.authorization
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.tools\.toolbox module
------------------------------
+pulsar.tools.toolbox module
+---------------------------
 
 .. automodule:: pulsar.tools.toolbox
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.tools\.validator module
--------------------------------
+pulsar.tools.validator module
+-----------------------------
 
 .. automodule:: pulsar.tools.validator
     :members:
diff --git a/docs/pulsar.util.pastescript.rst b/docs/pulsar.util.pastescript.rst
index c12b6c1ca8b1a88a3f5391b9660693a17bc1a14f..e0befb4e272bc37cd841a24a533818802b1bbc08 100644
--- a/docs/pulsar.util.pastescript.rst
+++ b/docs/pulsar.util.pastescript.rst
@@ -1,19 +1,19 @@
-pulsar\.util\.pastescript package
-=================================
+pulsar.util.pastescript package
+===============================
 
 Submodules
 ----------
 
-pulsar\.util\.pastescript\.loadwsgi module
-------------------------------------------
+pulsar.util.pastescript.loadwsgi module
+---------------------------------------
 
 .. automodule:: pulsar.util.pastescript.loadwsgi
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.util\.pastescript\.serve module
----------------------------------------
+pulsar.util.pastescript.serve module
+------------------------------------
 
 .. automodule:: pulsar.util.pastescript.serve
     :members:
diff --git a/docs/pulsar.util.rst b/docs/pulsar.util.rst
index 739df1542f1d837acdf10a9c5bb2e02dd6fefef7..3950621153d4649f7338e16fef67dd1495b20329 100644
--- a/docs/pulsar.util.rst
+++ b/docs/pulsar.util.rst
@@ -1,5 +1,5 @@
-pulsar\.util package
-====================
+pulsar.util package
+===================
 
 Subpackages
 -----------
diff --git a/docs/pulsar.web.rst b/docs/pulsar.web.rst
index a78cde9fd22690083128c944002eed000a69d5c2..1cd31da7b6bd01477c889704060219275186d0a8 100644
--- a/docs/pulsar.web.rst
+++ b/docs/pulsar.web.rst
@@ -1,27 +1,27 @@
-pulsar\.web package
-===================
+pulsar.web package
+==================
 
 Submodules
 ----------
 
-pulsar\.web\.framework module
------------------------------
+pulsar.web.framework module
+---------------------------
 
 .. automodule:: pulsar.web.framework
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.web\.routes module
---------------------------
+pulsar.web.routes module
+------------------------
 
 .. automodule:: pulsar.web.routes
     :members:
     :undoc-members:
     :show-inheritance:
 
-pulsar\.web\.wsgi module
-------------------------
+pulsar.web.wsgi module
+----------------------
 
 .. automodule:: pulsar.web.wsgi
     :members: