diff --git a/code/.gitignore b/code/.gitignore old mode 100644 new mode 100755 diff --git a/code/episode_2/README.md b/code/episode_2/README.md index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..3e5afc50d286ffcdc6e191dba410042421d603b5 100755 --- a/code/episode_2/README.md +++ b/code/episode_2/README.md @@ -0,0 +1,6 @@ +Nova Tutorial +======================= + + + +Developers: please read [this document](DEVELOPMENT.md) diff --git a/code/episode_2/poetry.lock b/code/episode_2/poetry.lock old mode 100644 new mode 100755 index 886a633bcef3f30db0df02cc1393416bb0de711e..d2927940bd1c9fb01ab200a77e9845d7977605c7 --- a/code/episode_2/poetry.lock +++ b/code/episode_2/poetry.lock @@ -1,10 +1,132 @@ -# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. + +[[package]] +name = "aiohappyeyeballs" +version = "2.4.4" +description = "Happy Eyeballs for asyncio" +optional = 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"Nova Tutorial Project" authors = [] readme = "README.md" license = "MIT" @@ -14,7 +14,7 @@ packages = [ [tool.poetry.dependencies] python = "^3.10" - +nova-trame = "*" [build-system] requires = ["poetry-core"] build-backend = "poetry.core.masonry.api" @@ -86,4 +86,4 @@ sphinxcontrib-napoleon ="*" tomli = "*" [tool.poetry.scripts] -app = "nova_tutorial:main" +app = "nova_tutorial.app:main" diff --git a/code/episode_2/src/nova_tutorial/__init__.py b/code/episode_2/src/nova_tutorial/__init__.py index 1a91a49b5a89c92f36d36cc1989d27c35d77e759..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100755 --- a/code/episode_2/src/nova_tutorial/__init__.py +++ b/code/episode_2/src/nova_tutorial/__init__.py @@ -1,7 +0,0 @@ -import importlib.metadata - -from .main import main - -__all__ = ["main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_2/src/nova_tutorial/app/__init__.py b/code/episode_2/src/nova_tutorial/app/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..2779e152ee33d75c63a76398fb972b5f7ef72209 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/__init__.py @@ -0,0 +1,5 @@ +from .main import main + +__all__ = [ + "main", +] diff --git a/code/episode_2/src/nova_tutorial/__main__.py b/code/episode_2/src/nova_tutorial/app/__main__.py similarity index 100% rename from code/episode_2/src/nova_tutorial/__main__.py rename to code/episode_2/src/nova_tutorial/app/__main__.py diff --git a/code/episode_2/src/nova_tutorial/app/main.py b/code/episode_2/src/nova_tutorial/app/main.py new file mode 100755 index 0000000000000000000000000000000000000000..2977dbe12154af3fdb3492345ca13d194b1bd09a --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/main.py @@ -0,0 +1,17 @@ +"""Main Application.""" + +import sys + + +def main() -> None: + kwargs = {} + from .views.main import MainApp + + app = MainApp() + for arg in sys.argv[2:]: + try: + key, value = arg.split("=") + kwargs[key] = int(value) + except Exception: + pass + app.server.start(**kwargs) diff --git a/code/episode_2/src/nova_tutorial/app/models/__init__.py b/code/episode_2/src/nova_tutorial/app/models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_2/src/nova_tutorial/app/models/main_model.py b/code/episode_2/src/nova_tutorial/app/models/main_model.py new file mode 100755 index 0000000000000000000000000000000000000000..917d32c16ccf0987862b2668997ee6c83a62cb28 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/models/main_model.py @@ -0,0 +1,23 @@ +"""Module for the main model.""" + +from pydantic import BaseModel, Field + + +class MainModel(BaseModel): + """ + A model class. + + This class uses Pydantic (https://docs.pydantic.dev/latest/), + which allows for defining data validation rules, + titles, descriptions, and examples that can be used in GUI elements or + other interfaces for improved clarity and usability. + """ + + username: str = Field( + default="test_name", + min_length=1, + title="User Name", + description="Please provide the name of the user", + examples=["user"], + ) + password: str = Field(default="test_password", title="User Password") diff --git a/code/episode_2/src/nova_tutorial/app/mvvm_factory.py b/code/episode_2/src/nova_tutorial/app/mvvm_factory.py new file mode 100755 index 0000000000000000000000000000000000000000..d7cf5f4b41e977f2a72d7b1561fa945c23b6f863 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/mvvm_factory.py @@ -0,0 +1,14 @@ +"""Module for the factory that creates viewmodels used in the application.""" + +from nova.mvvm.interface import BindingInterface + +from .models.main_model import MainModel +from .view_models.main import MainViewModel + + +def create_viewmodels(binding: BindingInterface) -> dict: + model = MainModel() + vm: dict = {} + vm["main"] = MainViewModel(model, binding) + + return vm diff --git a/code/episode_2/src/nova_tutorial/app/view_models/__init__.py b/code/episode_2/src/nova_tutorial/app/view_models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_2/src/nova_tutorial/app/view_models/main.py b/code/episode_2/src/nova_tutorial/app/view_models/main.py new file mode 100755 index 0000000000000000000000000000000000000000..5afc3cd024bc7a3d22eca803bb2b5f7a5b0b5223 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/view_models/main.py @@ -0,0 +1,30 @@ +"""Module for the main ViewModel.""" + +from typing import Any, Dict + +from nova.mvvm.interface import BindingInterface + +from ..models.main_model import MainModel + + +class MainViewModel: + """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" + + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + + # here we create a bind that connects ViewModel with View. It returns a communicator object, + # that allows to update View from ViewModel (by calling update_view). + # self.model will be updated automatically on changes of connected fields in View, + # but one also can provide a callback function if they want to react to those events + # and/or process errors. + self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) + + def change_callback(self, results: Dict[str, Any]) -> None: + if results["error"]: + print(f"error in fields {results['errored']}, model not changed") + else: + print(f"model fields updated: {results['updated']}") + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model) diff --git a/code/episode_2/src/nova_tutorial/app/views/__init__.py b/code/episode_2/src/nova_tutorial/app/views/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_2/src/nova_tutorial/app/views/main.py b/code/episode_2/src/nova_tutorial/app/views/main.py new file mode 100755 index 0000000000000000000000000000000000000000..c68326864d7f50c9ff664debe1bda281feb439dd --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/views/main.py @@ -0,0 +1,44 @@ +"""Main file.""" + +import logging + +from nova.mvvm.trame_binding import TrameBinding +from nova.trame import ThemedApp +from trame.app import get_server + +from ..mvvm_factory import create_viewmodels +from ..view_models.main import MainViewModel +from .tab_content_panel import TabContentPanel +from .tabs_panel import TabsPanel + +logger = logging.getLogger(__name__) +logger.setLevel(logging.INFO) + + +class MainApp(ThemedApp): + """Main application view class. Calls rendering of nested UI elements.""" + + def __init__(self) -> None: + super().__init__() + self.server = get_server(None, client_type="vue3") + binding = TrameBinding(self.server.state) + self.server.state.trame__title = "Nova Tutorial" + self.view_models = create_viewmodels(binding) + self.view_model: MainViewModel = self.view_models["main"] + self.create_ui() + + def create_ui(self) -> None: + self.state.trame__title = "Nova Tutorial" + + with super().create_ui() as layout: + layout.toolbar_title.set_text("Nova Tutorial") + with layout.pre_content: + TabsPanel(self.view_models["main"]) + with layout.content: + TabContentPanel( + self.server, + self.view_models["main"], + ) + with layout.post_content: + pass + return layout diff --git a/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py new file mode 100755 index 0000000000000000000000000000000000000000..891cdd10014e7847b9c89aa7c5e81a819947e031 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/views/sample_tab_1.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 1.""" + +from nova.trame.view.components import InputField + + +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.username") diff --git a/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py new file mode 100755 index 0000000000000000000000000000000000000000..46765f0aa2b1c51c28a7638993f8846b6c0c5677 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/views/sample_tab_2.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField + + +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.password") diff --git a/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..2f8138119d67defbf03ab41e048eac3b15613d9c --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/views/tab_content_panel.py @@ -0,0 +1,28 @@ +"""Module for the Tab Content panel.""" + +from trame.widgets import vuetify3 as vuetify +from trame_server import Server + +from ..view_models.main import MainViewModel +from .sample_tab_1 import SampleTab1 +from .sample_tab_2 import SampleTab2 + + +class TabContentPanel: + """View class to render content for a selected tab.""" + + def __init__(self, server: Server, view_model: MainViewModel) -> None: + self.view_model = view_model + self.server = server + self.ctrl = server.controller + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VForm(ref="form") as self.f: + with vuetify.VContainer(classes="pa-0", fluid=True): + with vuetify.VCard(): + with vuetify.VWindow(v_model="active_tab"): + with vuetify.VWindowItem(value=1): + SampleTab1() + with vuetify.VWindowItem(value=2): + SampleTab2() diff --git a/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..c36ea880d4dba7e8d46e7458b65ade6407dae8b4 --- /dev/null +++ b/code/episode_2/src/nova_tutorial/app/views/tabs_panel.py @@ -0,0 +1,19 @@ +"""Module for the Tab panel.""" + +from trame.widgets import vuetify3 as vuetify + +from ..view_models.main import MainViewModel + + +class TabsPanel: + """View class to render tabs.""" + + def __init__(self, view_model: MainViewModel): + self.view_model = view_model + self.view_model.config_bind.connect("config") + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): + vuetify.VTab("Sample Tab 1", value=1) + vuetify.VTab("Sample Tab 2", value=2) diff --git a/code/episode_2/src/nova_tutorial/main.py b/code/episode_2/src/nova_tutorial/main.py deleted file mode 100755 index 014f69f194744950fa7de742154d3ed8556b717a..0000000000000000000000000000000000000000 --- a/code/episode_2/src/nova_tutorial/main.py +++ /dev/null @@ -1,5 +0,0 @@ -"""Main Application.""" - - -def main() -> None: - print("Hello from the main function!") diff --git a/code/episode_3/README.md b/code/episode_3/README.md index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..3e5afc50d286ffcdc6e191dba410042421d603b5 100755 --- a/code/episode_3/README.md +++ b/code/episode_3/README.md @@ -0,0 +1,6 @@ +Nova Tutorial +======================= + + + +Developers: please read [this document](DEVELOPMENT.md) diff --git a/code/episode_3/image.png b/code/episode_3/image.png new file mode 100644 index 0000000000000000000000000000000000000000..3989c99fbeafdf68d33a22cc14832b03eb19b5b5 Binary files /dev/null and b/code/episode_3/image.png differ diff --git a/code/episode_3/poetry.lock b/code/episode_3/poetry.lock old mode 100755 new mode 100644 index 5b007d1ca65c2f1db92375bfc2f7123650535927..4e9d65c3ded1c888e9f61f5bde29c7b529043eb8 --- a/code/episode_3/poetry.lock +++ b/code/episode_3/poetry.lock @@ -1,9 +1,10 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. 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"sha256:f9c24c08b89d2bd9bd77951ad0c01da9c28905dda29d7397f7f72b542c496840"}, +] + +[package.dependencies] +aiohttp = "<4" +msgpack = ">=1,<2" + +[package.extras] +ssl = ["cryptography"] + [[package]] name = "yarl" version = "1.18.3" description = "Yet another URL library" +category = "main" optional = false python-versions = ">=3.9" files = [ @@ -1945,4 +2332,4 @@ propcache = ">=0.2.0" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "462c23766473ec3e6e33285c474975c3f25163e5155eb10e15d3921a48922c9b" +content-hash = "21cb4efdfeedffeac02c47e0e53c8fa5e296badf0f246a4f72738eb878ebcc21" diff --git a/code/episode_3/pyproject.toml b/code/episode_3/pyproject.toml index e5c54e538d306665de4fd3f6703bb05e89e632a5..1237ea40b957fb394428887384e87c22450d4f15 100755 --- a/code/episode_3/pyproject.toml +++ b/code/episode_3/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "nova-tutorial" version = "0.1.0" -description = "Template application" +description = "Nova Tutorial Project" authors = [] readme = "README.md" license = "MIT" @@ -14,8 +14,8 @@ packages = [ [tool.poetry.dependencies] python = "^3.10" -nova-galaxy = "^0.4.0" - +nova-trame = "*" +nova-galaxy = "^0.7.0" [build-system] requires = ["poetry-core"] @@ -88,4 +88,4 @@ sphinxcontrib-napoleon ="*" tomli = "*" [tool.poetry.scripts] -app = "nova_tutorial:main" +app = "nova_tutorial.app:main" diff --git a/code/episode_3/src/nova_tutorial/__init__.py b/code/episode_3/src/nova_tutorial/__init__.py index 1a91a49b5a89c92f36d36cc1989d27c35d77e759..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100755 --- a/code/episode_3/src/nova_tutorial/__init__.py +++ b/code/episode_3/src/nova_tutorial/__init__.py @@ -1,7 +0,0 @@ -import importlib.metadata - -from .main import main - -__all__ = ["main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_3/src/nova_tutorial/app/__init__.py b/code/episode_3/src/nova_tutorial/app/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..2779e152ee33d75c63a76398fb972b5f7ef72209 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/__init__.py @@ -0,0 +1,5 @@ +from .main import main + +__all__ = [ + "main", +] diff --git a/code/episode_3/src/nova_tutorial/__main__.py b/code/episode_3/src/nova_tutorial/app/__main__.py similarity index 100% rename from code/episode_3/src/nova_tutorial/__main__.py rename to code/episode_3/src/nova_tutorial/app/__main__.py diff --git a/code/episode_3/src/nova_tutorial/app/main.py b/code/episode_3/src/nova_tutorial/app/main.py new file mode 100755 index 0000000000000000000000000000000000000000..d77c9da437808f872c0f1ce3911d664327c2e4e2 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/main.py @@ -0,0 +1,25 @@ +"""Main Application.""" + +import sys +from .models.fractal import Fractal + + +def main() -> None: + fractal = Fractal() + try: + fractal.run_fractal_tool() + except Exception as e: + print(f"Error running fractal tool: {e}") + + + kwargs = {} + from .views.main import MainApp + + app = MainApp() + for arg in sys.argv[2:]: + try: + key, value = arg.split("=") + kwargs[key] = int(value) + except Exception: + pass + app.server.start(**kwargs) diff --git a/code/episode_3/src/nova_tutorial/app/models/__init__.py b/code/episode_3/src/nova_tutorial/app/models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_4/src/nova_tutorial/models/fractal.py b/code/episode_3/src/nova_tutorial/app/models/fractal.py similarity index 75% rename from code/episode_4/src/nova_tutorial/models/fractal.py rename to code/episode_3/src/nova_tutorial/app/models/fractal.py index d46e1d59b914d2f373f40390691ef3dcd829c43a..b1602f2a9ba1c2bc609b0e7974654b3d6465f447 100755 --- a/code/episode_4/src/nova_tutorial/models/fractal.py +++ b/code/episode_3/src/nova_tutorial/app/models/fractal.py @@ -1,5 +1,5 @@ import os -from nova.galaxy import Nova, Parameters, Tool +from nova.galaxy import Connection, Parameters, Tool class Fractal: @@ -18,14 +18,15 @@ class Fractal: "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." ) - nova = Nova(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) tool = Tool(id="neutrons_fractal") params = Parameters() params.add_input(name="option", value=self.fractal_type) - with nova.connect() as galaxy_connection: + with conn.connect() as galaxy_connection: data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() - tool.run(data_store, params) + output = tool.run(data_store, params) + output.get_dataset("output").download("image.png") print("Fractal tool finished successfully.") \ No newline at end of file diff --git a/code/episode_3/src/nova_tutorial/app/models/main_model.py b/code/episode_3/src/nova_tutorial/app/models/main_model.py new file mode 100755 index 0000000000000000000000000000000000000000..917d32c16ccf0987862b2668997ee6c83a62cb28 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/models/main_model.py @@ -0,0 +1,23 @@ +"""Module for the main model.""" + +from pydantic import BaseModel, Field + + +class MainModel(BaseModel): + """ + A model class. + + This class uses Pydantic (https://docs.pydantic.dev/latest/), + which allows for defining data validation rules, + titles, descriptions, and examples that can be used in GUI elements or + other interfaces for improved clarity and usability. + """ + + username: str = Field( + default="test_name", + min_length=1, + title="User Name", + description="Please provide the name of the user", + examples=["user"], + ) + password: str = Field(default="test_password", title="User Password") diff --git a/code/episode_3/src/nova_tutorial/app/mvvm_factory.py b/code/episode_3/src/nova_tutorial/app/mvvm_factory.py new file mode 100755 index 0000000000000000000000000000000000000000..d7cf5f4b41e977f2a72d7b1561fa945c23b6f863 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/mvvm_factory.py @@ -0,0 +1,14 @@ +"""Module for the factory that creates viewmodels used in the application.""" + +from nova.mvvm.interface import BindingInterface + +from .models.main_model import MainModel +from .view_models.main import MainViewModel + + +def create_viewmodels(binding: BindingInterface) -> dict: + model = MainModel() + vm: dict = {} + vm["main"] = MainViewModel(model, binding) + + return vm diff --git a/code/episode_3/src/nova_tutorial/app/view_models/__init__.py b/code/episode_3/src/nova_tutorial/app/view_models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_3/src/nova_tutorial/app/view_models/main.py b/code/episode_3/src/nova_tutorial/app/view_models/main.py new file mode 100755 index 0000000000000000000000000000000000000000..5afc3cd024bc7a3d22eca803bb2b5f7a5b0b5223 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/view_models/main.py @@ -0,0 +1,30 @@ +"""Module for the main ViewModel.""" + +from typing import Any, Dict + +from nova.mvvm.interface import BindingInterface + +from ..models.main_model import MainModel + + +class MainViewModel: + """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" + + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + + # here we create a bind that connects ViewModel with View. It returns a communicator object, + # that allows to update View from ViewModel (by calling update_view). + # self.model will be updated automatically on changes of connected fields in View, + # but one also can provide a callback function if they want to react to those events + # and/or process errors. + self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) + + def change_callback(self, results: Dict[str, Any]) -> None: + if results["error"]: + print(f"error in fields {results['errored']}, model not changed") + else: + print(f"model fields updated: {results['updated']}") + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model) diff --git a/code/episode_3/src/nova_tutorial/app/views/__init__.py b/code/episode_3/src/nova_tutorial/app/views/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_3/src/nova_tutorial/app/views/main.py b/code/episode_3/src/nova_tutorial/app/views/main.py new file mode 100755 index 0000000000000000000000000000000000000000..c68326864d7f50c9ff664debe1bda281feb439dd --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/views/main.py @@ -0,0 +1,44 @@ +"""Main file.""" + +import logging + +from nova.mvvm.trame_binding import TrameBinding +from nova.trame import ThemedApp +from trame.app import get_server + +from ..mvvm_factory import create_viewmodels +from ..view_models.main import MainViewModel +from .tab_content_panel import TabContentPanel +from .tabs_panel import TabsPanel + +logger = logging.getLogger(__name__) +logger.setLevel(logging.INFO) + + +class MainApp(ThemedApp): + """Main application view class. Calls rendering of nested UI elements.""" + + def __init__(self) -> None: + super().__init__() + self.server = get_server(None, client_type="vue3") + binding = TrameBinding(self.server.state) + self.server.state.trame__title = "Nova Tutorial" + self.view_models = create_viewmodels(binding) + self.view_model: MainViewModel = self.view_models["main"] + self.create_ui() + + def create_ui(self) -> None: + self.state.trame__title = "Nova Tutorial" + + with super().create_ui() as layout: + layout.toolbar_title.set_text("Nova Tutorial") + with layout.pre_content: + TabsPanel(self.view_models["main"]) + with layout.content: + TabContentPanel( + self.server, + self.view_models["main"], + ) + with layout.post_content: + pass + return layout diff --git a/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py new file mode 100755 index 0000000000000000000000000000000000000000..891cdd10014e7847b9c89aa7c5e81a819947e031 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/views/sample_tab_1.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 1.""" + +from nova.trame.view.components import InputField + + +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.username") diff --git a/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py new file mode 100755 index 0000000000000000000000000000000000000000..46765f0aa2b1c51c28a7638993f8846b6c0c5677 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/views/sample_tab_2.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField + + +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.password") diff --git a/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..2f8138119d67defbf03ab41e048eac3b15613d9c --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/views/tab_content_panel.py @@ -0,0 +1,28 @@ +"""Module for the Tab Content panel.""" + +from trame.widgets import vuetify3 as vuetify +from trame_server import Server + +from ..view_models.main import MainViewModel +from .sample_tab_1 import SampleTab1 +from .sample_tab_2 import SampleTab2 + + +class TabContentPanel: + """View class to render content for a selected tab.""" + + def __init__(self, server: Server, view_model: MainViewModel) -> None: + self.view_model = view_model + self.server = server + self.ctrl = server.controller + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VForm(ref="form") as self.f: + with vuetify.VContainer(classes="pa-0", fluid=True): + with vuetify.VCard(): + with vuetify.VWindow(v_model="active_tab"): + with vuetify.VWindowItem(value=1): + SampleTab1() + with vuetify.VWindowItem(value=2): + SampleTab2() diff --git a/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..c36ea880d4dba7e8d46e7458b65ade6407dae8b4 --- /dev/null +++ b/code/episode_3/src/nova_tutorial/app/views/tabs_panel.py @@ -0,0 +1,19 @@ +"""Module for the Tab panel.""" + +from trame.widgets import vuetify3 as vuetify + +from ..view_models.main import MainViewModel + + +class TabsPanel: + """View class to render tabs.""" + + def __init__(self, view_model: MainViewModel): + self.view_model = view_model + self.view_model.config_bind.connect("config") + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): + vuetify.VTab("Sample Tab 1", value=1) + vuetify.VTab("Sample Tab 2", value=2) diff --git a/code/episode_3/src/nova_tutorial/main.py b/code/episode_3/src/nova_tutorial/main.py deleted file mode 100755 index fb122cd6eaa3648a50754c4272fbe9007de6046f..0000000000000000000000000000000000000000 --- a/code/episode_3/src/nova_tutorial/main.py +++ /dev/null @@ -1,13 +0,0 @@ -"""Main Application.""" - -from nova_tutorial.models.fractal import Fractal - -def main(): - fractal = Fractal() - try: - fractal.run_fractal_tool() - except Exception as e: - print(f"Error running fractal tool: {e}") - -if __name__ == "__main__": - main() \ No newline at end of file diff --git a/code/episode_4/poetry.lock b/code/episode_4/poetry.lock index 41e491dc4d2c1c42c1fe0f36b2ba6450aab3112c..4e9d65c3ded1c888e9f61f5bde29c7b529043eb8 100644 --- a/code/episode_4/poetry.lock +++ b/code/episode_4/poetry.lock 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framework to build applications in plain Python" category = "main" optional = false python-versions = ">=3.9" files = [ - {file = "trame-3.7.6-py3-none-any.whl", hash = "sha256:17d765630404ee7e25667aa0fcf48495df040338d4daebffa9bae9adf2412491"}, - {file = "trame-3.7.6.tar.gz", hash = "sha256:683dbc88a843570ded3ae60ee610053c730c78f90899c9c0dab5fe54ad1f530b"}, + {file = "trame-3.8.0-py3-none-any.whl", hash = "sha256:e4c9e648938ec0759f6893ba7afd095afaf0c88b4b8202157717691e135e924f"}, + {file = "trame-3.8.0.tar.gz", hash = "sha256:d084942828ac7930e05dbb765468cffe4ef8bd5170dbd48333a930140b540ccd"}, ] [package.dependencies] @@ -2048,6 +2096,39 @@ wslink = ">=2.2.2,<3" [package.extras] dev = ["pre-commit", "pytest", "pytest-asyncio", "ruff"] +[[package]] +name = "trame-vega" +version = "2.1.1" +description = "Vega widget for trame" +category = "main" +optional = false +python-versions = "*" +files = [ + {file = "trame-vega-2.1.1.tar.gz", hash = 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"5ab47085430602c49c1f67bf8020a089a1c4187893c608858932d7d4f2523445" +content-hash = "21cb4efdfeedffeac02c47e0e53c8fa5e296badf0f246a4f72738eb878ebcc21" diff --git a/code/episode_4/pyproject.toml b/code/episode_4/pyproject.toml index eda0953482a4c80e656ef0b99cf31cf1e37610ba..1237ea40b957fb394428887384e87c22450d4f15 100755 --- a/code/episode_4/pyproject.toml +++ b/code/episode_4/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "nova-tutorial" version = "0.1.0" -description = "Template application" +description = "Nova Tutorial Project" authors = [] readme = "README.md" license = "MIT" @@ -14,9 +14,8 @@ packages = [ [tool.poetry.dependencies] python = "^3.10" -nova-galaxy = "^0.4.0" -nova-mvvm = "0.8.0" - +nova-trame = "*" +nova-galaxy = "^0.7.0" [build-system] requires = ["poetry-core"] @@ -89,4 +88,4 @@ sphinxcontrib-napoleon ="*" tomli = "*" [tool.poetry.scripts] -app = "nova_tutorial:main" +app = "nova_tutorial.app:main" diff --git a/code/episode_4/src/nova_tutorial/__init__.py b/code/episode_4/src/nova_tutorial/__init__.py index 1a91a49b5a89c92f36d36cc1989d27c35d77e759..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100755 --- a/code/episode_4/src/nova_tutorial/__init__.py +++ b/code/episode_4/src/nova_tutorial/__init__.py @@ -1,7 +0,0 @@ -import importlib.metadata - -from .main import main - -__all__ = ["main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_4/src/nova_tutorial/app/__init__.py b/code/episode_4/src/nova_tutorial/app/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..2779e152ee33d75c63a76398fb972b5f7ef72209 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/__init__.py @@ -0,0 +1,5 @@ +from .main import main + +__all__ = [ + "main", +] diff --git a/code/episode_4/src/nova_tutorial/__main__.py b/code/episode_4/src/nova_tutorial/app/__main__.py similarity index 100% rename from code/episode_4/src/nova_tutorial/__main__.py rename to code/episode_4/src/nova_tutorial/app/__main__.py diff --git a/code/episode_4/src/nova_tutorial/app/main.py b/code/episode_4/src/nova_tutorial/app/main.py new file mode 100755 index 0000000000000000000000000000000000000000..add49c1138d458f114cf3804dae7bc507d8446f4 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/main.py @@ -0,0 +1,18 @@ +"""Main Application.""" + +import sys +from .models.fractal import Fractal + + +def main() -> None: + kwargs = {} + from .views.main import MainApp + + app = MainApp() + for arg in sys.argv[2:]: + try: + key, value = arg.split("=") + kwargs[key] = int(value) + except Exception: + pass + app.server.start(**kwargs) diff --git a/code/episode_4/src/nova_tutorial/app/models/__init__.py b/code/episode_4/src/nova_tutorial/app/models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_4/src/nova_tutorial/app/models/fractal.py b/code/episode_4/src/nova_tutorial/app/models/fractal.py new file mode 100755 index 0000000000000000000000000000000000000000..86f95cc9b4e6c793daecc429edd87bf1c85da4b4 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/models/fractal.py @@ -0,0 +1,35 @@ +import os +import base64 +from typing import Literal + +from pydantic import BaseModel, Field +from nova.galaxy import Connection, Parameters, Tool + + +class Fractal(BaseModel): + fractal_type: Literal["mandelbrot", "julia", "random", "markus"] = Field(default="mandelbrot") + galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") + galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") + image_data: str = Field(default="", description="Base64 encoded PNG") + + def set_fractal_type(self, fractal_type: str): + self.fractal_type = fractal_type + + def run_fractal_tool(self): + """Runs the fractal tool with the current fractal type.""" + if not self.galaxy_url or not self.galaxy_key: + raise Exception( + "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." + ) + + conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + tool = Tool(id="neutrons_fractal") + params = Parameters() + + with conn.connect() as galaxy_connection: + data_store = galaxy_connection.create_data_store(name="fractal_store") + data_store.persist() + output = tool.run(data_store, params) + output.get_dataset("output").download("tmp.png") + + print("Fractal tool finished successfully.") diff --git a/code/episode_4/src/nova_tutorial/app/models/main_model.py b/code/episode_4/src/nova_tutorial/app/models/main_model.py new file mode 100755 index 0000000000000000000000000000000000000000..6d5028af3a9d0c74b3f736d9fffba15ff3fba24a --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/models/main_model.py @@ -0,0 +1,25 @@ +"""Module for the main model.""" + +from pydantic import BaseModel, Field +from .fractal import Fractal + + +class MainModel(BaseModel): + """ + A model class. + + This class uses Pydantic (https://docs.pydantic.dev/latest/), + which allows for defining data validation rules, + titles, descriptions, and examples that can be used in GUI elements or + other interfaces for improved clarity and usability. + """ + + username: str = Field( + default="test_name", + min_length=1, + title="User Name", + description="Please provide the name of the user", + examples=["user"], + ) + password: str = Field(default="test_password", title="User Password") + fractal: Fractal = Field(default_factory=Fractal) \ No newline at end of file diff --git a/code/episode_4/src/nova_tutorial/app/mvvm_factory.py b/code/episode_4/src/nova_tutorial/app/mvvm_factory.py new file mode 100755 index 0000000000000000000000000000000000000000..3b56e2b6451e3d099b1e15422f551b0b340ceb4f --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/mvvm_factory.py @@ -0,0 +1,15 @@ +"""Module for the factory that creates viewmodels used in the application.""" + +from nova.mvvm.interface import BindingInterface + +from .models.main_model import MainModel +from .view_models.main import MainViewModel + + +def create_viewmodels(binding: BindingInterface) -> dict: + model = MainModel() + vm: dict = {} + vm["main"] = MainViewModel(model, binding) + print(vm["main"].model.fractal.galaxy_key) + + return vm diff --git a/code/episode_4/src/nova_tutorial/app/view_models/__init__.py b/code/episode_4/src/nova_tutorial/app/view_models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_4/src/nova_tutorial/app/view_models/main.py b/code/episode_4/src/nova_tutorial/app/view_models/main.py new file mode 100755 index 0000000000000000000000000000000000000000..5d218c681e84aeb03ba8034278789b1ab95c1ae0 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/view_models/main.py @@ -0,0 +1,37 @@ +"""Module for the main ViewModel.""" + +from typing import Any, Dict + +from nova.mvvm.interface import BindingInterface + +from ..models.main_model import MainModel + + +class MainViewModel(): + """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" + + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + self.image_path = "" + + + # here we create a bind that connects ViewModel with View. It returns a communicator object, + # that allows to update View from ViewModel (by calling update_view). + # self.model will be updated automatically on changes of connected fields in View, + # but one also can provide a callback function if they want to react to those events + # and/or process errors. + self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) + + def change_callback(self, results: Dict[str, Any]) -> None: + if results["error"]: + print(f"error in fields {results['errored']}, model not changed") + else: + print(f"model fields updated: {results['updated']}") + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model) + + def run_fractal(self) -> None: + self.model.fractal.run_fractal_tool() + self.image_path = self.model.fractal.image_data + self.update_view() diff --git a/code/episode_4/src/nova_tutorial/app/views/__init__.py b/code/episode_4/src/nova_tutorial/app/views/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py b/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py new file mode 100755 index 0000000000000000000000000000000000000000..c20fc15c255109056057155b000cba1c8393bd65 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/fractal_tab.py @@ -0,0 +1,23 @@ +from trame.widgets import vuetify3 as vuetify + +from nova.trame.view.components import InputField +from nova_tutorial.app.view_models.main import MainViewModel + +class FractalTab: + + def __init__(self, view_model: MainViewModel) -> None: + self.view_model = view_model + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.fractal.fractal_type") + vuetify.VBtn( + "Run Fractal", + click=self.view_model.run_fractal # calls the run_fractal_tool method + ) + vuetify.VImg( + v_model="config.image_path", + src=self.view_model.image_path, + max_height="400", + max_width="400" + ) \ No newline at end of file diff --git a/code/episode_4/src/nova_tutorial/app/views/main.py b/code/episode_4/src/nova_tutorial/app/views/main.py new file mode 100755 index 0000000000000000000000000000000000000000..2000c009d154074f7355eba4f5bc53a6beb60144 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/main.py @@ -0,0 +1,45 @@ +"""Main file.""" + +import logging + +from nova.mvvm.trame_binding import TrameBinding +from nova.trame import ThemedApp +from trame.app import get_server + +from ..mvvm_factory import create_viewmodels +from ..view_models.main import MainViewModel +from .tab_content_panel import TabContentPanel +from .tabs_panel import TabsPanel + + +logger = logging.getLogger(__name__) +logger.setLevel(logging.INFO) + + +class MainApp(ThemedApp): + """Main application view class. Calls rendering of nested UI elements.""" + + def __init__(self) -> None: + super().__init__() + self.server = get_server(None, client_type="vue3") + binding = TrameBinding(self.server.state) + self.server.state.trame__title = "Nova Tutorial" + self.view_models = create_viewmodels(binding) + self.view_model: MainViewModel = self.view_models["main"] + self.create_ui() + + def create_ui(self) -> None: + self.state.trame__title = "Nova Tutorial" + + with super().create_ui() as layout: + layout.toolbar_title.set_text("Nova Tutorial") + with layout.pre_content: + TabsPanel(self.view_models["main"]) + with layout.content: + TabContentPanel( + self.server, + self.view_models["main"], + ) + with layout.post_content: + pass + return layout diff --git a/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py new file mode 100755 index 0000000000000000000000000000000000000000..891cdd10014e7847b9c89aa7c5e81a819947e031 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/sample_tab_1.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 1.""" + +from nova.trame.view.components import InputField + + +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.username") diff --git a/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py new file mode 100755 index 0000000000000000000000000000000000000000..46765f0aa2b1c51c28a7638993f8846b6c0c5677 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/sample_tab_2.py @@ -0,0 +1,13 @@ +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField + + +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + InputField(v_model="config.password") diff --git a/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..ab67bd6348f894617b8a1ddee53f3631c654932e --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/tab_content_panel.py @@ -0,0 +1,31 @@ +"""Module for the Tab Content panel.""" + +from trame.widgets import vuetify3 as vuetify +from trame_server import Server + +from ..view_models.main import MainViewModel +from .sample_tab_1 import SampleTab1 +from .sample_tab_2 import SampleTab2 +from .fractal_tab import FractalTab # Import the FractalTab + +class TabContentPanel: + """View class to render content for a selected tab.""" + + def __init__(self, server: Server, view_model: MainViewModel) -> None: + self.view_model = view_model + self.server = server + self.ctrl = server.controller + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VForm(ref="form") as self.f: + with vuetify.VContainer(classes="pa-0", fluid=True): + with vuetify.VCard(): + with vuetify.VWindow(v_model="active_tab"): + with vuetify.VWindowItem(value=1): + FractalTab(self.view_model) # Add FractalTab + with vuetify.VWindowItem(value=2): + SampleTab1() + with vuetify.VWindowItem(value=3): + SampleTab2() + diff --git a/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..672b25d5eddc142654e4710f213af173fdb25438 --- /dev/null +++ b/code/episode_4/src/nova_tutorial/app/views/tabs_panel.py @@ -0,0 +1,20 @@ +"""Module for the Tab panel.""" + +from trame.widgets import vuetify3 as vuetify + +from ..view_models.main import MainViewModel + + +class TabsPanel: + """View class to render tabs.""" + + def __init__(self, view_model: MainViewModel): + self.view_model = view_model + self.view_model.config_bind.connect("config") + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): + vuetify.VTab("Fractal", value=1) # Add Fractal Tab + vuetify.VTab("Sample Tab 1", value=2) + vuetify.VTab("Sample Tab 2", value=3) diff --git a/code/episode_4/src/nova_tutorial/main.py b/code/episode_4/src/nova_tutorial/main.py deleted file mode 100755 index 6f8a28a9e9bda3b1aba24e4341555abcba7e5425..0000000000000000000000000000000000000000 --- a/code/episode_4/src/nova_tutorial/main.py +++ /dev/null @@ -1,18 +0,0 @@ -"""Main Application.""" - -from nova.mvvm.trame_binding import TrameBinding -from nova_tutorial.view_models.fractal_view_model import FractalViewModel -from trame.app import get_server - -def main(): - server = get_server(None, client_type="vue3") - binding = TrameBinding(server.state) - fractal_vm = FractalViewModel(binding) - try: - fractal_vm.run_fractal_tool() - except Exception as e: - print(f"Error running fractal tool: {e}") - - -if __name__ == "__main__": - main() \ No newline at end of file diff --git a/code/episode_4/src/nova_tutorial/view_models/fractal_view_model.py b/code/episode_4/src/nova_tutorial/view_models/fractal_view_model.py deleted file mode 100755 index 2ad676893a000a15f57e7fc3a535c3c5507c6de6..0000000000000000000000000000000000000000 --- a/code/episode_4/src/nova_tutorial/view_models/fractal_view_model.py +++ /dev/null @@ -1,49 +0,0 @@ -import os -from nova.mvvm.interface import BindingInterface -from pydantic import BaseModel, Field,ValidationError -from typing import Literal - -from ..models.fractal import Fractal - - -class FractalToolInput(BaseModel): - fractal_type: Literal["mandelbrot", "julia", "random", "markus"] = Field(default="mandelbrot") - - -class FractalViewModel(): - def __init__(self, binding: BindingInterface): - super().__init__() - self.fractal = Fractal() - - self._fractal_type = FractalToolInput() - self._job_status:dict[str, Any] = {} - self._message: str = "" - - self.job_status_bind = binding.new_bind( - linked_object=self._job_status - ) - self.message_bind = binding.new_bind( - linked_object=self._message, - ) - self.fractal_type_bind = binding.new_bind( - linked_object=self._fractal_type, - ) - - def set_fractal_type(self, fractal_type: str): - try: - FractalToolInput(fractal_type=fractal_type) - except ValidationError as e: - self._message = f"Validation Error: {e}" - return - self._fractal_type = fractal_type - print(f"Set new fractal type to: {self._fractal_type}") - - def run_fractal_tool(self): - self._job_status["fractal"] = "Starting" - try: - self.fractal.set_fractal_type(self._fractal_type.fractal_type) - self.fractal.run_fractal_tool() - self._message = "Fractal tool finished successfully." - except Exception as e: - self._message = f"Error running fractal tool: {e}" - raise e \ No newline at end of file diff --git a/code/episode_4/tmp.png b/code/episode_4/tmp.png new file mode 100644 index 0000000000000000000000000000000000000000..3989c99fbeafdf68d33a22cc14832b03eb19b5b5 Binary files /dev/null and b/code/episode_4/tmp.png differ diff --git a/code/episode_5/poetry.lock b/code/episode_5/poetry.lock old mode 100755 new mode 100644 index b8349c097d45aa94a4b0babffebff4a82f722287..4e9d65c3ded1c888e9f61f5bde29c7b529043eb8 --- a/code/episode_5/poetry.lock +++ b/code/episode_5/poetry.lock @@ -1,9 +1,10 @@ -# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.4.1 and should not be changed by hand. 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Sphinx" +category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1793,6 +1858,7 @@ dev = ["bump2version", "transifex-client", "twine", "wheel"] name = "sphinxcontrib-applehelp" version = "2.0.0" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" +category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1809,6 +1875,7 @@ test = ["pytest"] name = "sphinxcontrib-devhelp" version = "2.0.0" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp documents" +category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1825,6 +1892,7 @@ test = ["pytest"] name = "sphinxcontrib-htmlhelp" version = "2.1.0" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" +category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1841,6 +1909,7 @@ test = ["html5lib", "pytest"] name = "sphinxcontrib-jquery" version = "4.1" description = "Extension to include jQuery on newer Sphinx releases" +category = "dev" optional = false python-versions = ">=2.7" files = [ @@ -1855,6 +1924,7 @@ Sphinx = ">=1.8" name = "sphinxcontrib-jsmath" version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" +category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1869,6 +1939,7 @@ test = ["flake8", "mypy", "pytest"] name = "sphinxcontrib-napoleon" version = "0.7" description = "Sphinx \"napoleon\" extension." +category = "dev" optional = false python-versions = "*" files = [ @@ -1884,6 +1955,7 @@ six = ">=1.5.2" name = "sphinxcontrib-qthelp" version = "2.0.0" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp documents" +category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1900,6 +1972,7 @@ test = ["defusedxml (>=0.7.1)", "pytest"] name = "sphinxcontrib-serializinghtml" version = "2.0.0" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)" +category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -1916,6 +1989,7 @@ test = ["pytest"] name = "tinydb" version = "4.8.2" description = "TinyDB is a tiny, document oriented database optimized for your happiness :)" +category = "main" optional = false python-versions = "<4.0,>=3.8" files = [ @@ -1927,6 +2001,7 @@ files = [ name = "tomli" version = "2.2.1" description = "A lil' TOML parser" +category = "main" optional = false python-versions = ">=3.8" files = [ @@ -1966,13 +2041,14 @@ files = [ [[package]] name = "trame" -version = "3.7.6" +version = "3.8.0" description = "Trame, a framework to build applications in plain Python" +category = "main" optional = false python-versions = ">=3.9" files = [ - {file = "trame-3.7.6-py3-none-any.whl", hash = "sha256:17d765630404ee7e25667aa0fcf48495df040338d4daebffa9bae9adf2412491"}, - {file = "trame-3.7.6.tar.gz", hash = "sha256:683dbc88a843570ded3ae60ee610053c730c78f90899c9c0dab5fe54ad1f530b"}, + {file = "trame-3.8.0-py3-none-any.whl", hash = "sha256:e4c9e648938ec0759f6893ba7afd095afaf0c88b4b8202157717691e135e924f"}, + {file = "trame-3.8.0.tar.gz", hash = "sha256:d084942828ac7930e05dbb765468cffe4ef8bd5170dbd48333a930140b540ccd"}, ] [package.dependencies] @@ -1989,6 +2065,7 @@ jupyter = ["jupyterlab"] name = "trame-client" version = "3.5.2" description = "Internal client of trame" +category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2004,6 +2081,7 @@ test = ["Pillow", "pixelmatch", "pytest", "pytest-xprocess", "seleniumbase"] name = "trame-server" version = "3.3.0" description = "Internal server side implementation of trame" +category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2022,6 +2100,7 @@ dev = ["pre-commit", "pytest", "pytest-asyncio", "ruff"] name = "trame-vega" version = "2.1.1" description = "Vega widget for trame" +category = "main" optional = false python-versions = "*" files = [ @@ -2036,6 +2115,7 @@ trame-client = "*" name = "trame-vuetify" version = "2.8.1" description = "Vuetify widgets for trame" +category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2053,6 +2133,7 @@ dev = ["pre-commit", "pytest", "ruff"] name = "tuspy" version = "1.1.0" description = "A Python client for the tus resumable upload protocol -> http://tus.io" +category = "main" optional = false python-versions = ">=3.5.3" files = [ @@ -2073,6 +2154,7 @@ test = ["aioresponses (>=0.6.2)", "coverage (>=4.2)", "parametrize (>=0.1.1)", " name = "typing-extensions" version = "4.12.2" description = "Backported and Experimental Type Hints for Python 3.8+" +category = "main" optional = false python-versions = ">=3.8" files = [ @@ -2084,6 +2166,7 @@ files = [ name = "urllib3" version = "2.3.0" description = "HTTP library with thread-safe connection pooling, file post, and more." +category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2101,6 +2184,7 @@ zstd = ["zstandard (>=0.18.0)"] name = "virtualenv" version = "20.29.1" description = "Virtual Python Environment builder" +category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2121,6 +2205,7 @@ test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess name = "wcwidth" version = "0.2.13" description = "Measures the displayed width of unicode strings in a terminal" +category = "dev" optional = false python-versions = "*" files = [ @@ -2132,6 +2217,7 @@ files = [ name = "wslink" version = "2.2.2" description = "Python/JavaScript library for communicating over WebSocket" +category = "main" optional = false python-versions = "*" files = [ @@ -2150,6 +2236,7 @@ ssl = ["cryptography"] name = "yarl" version = "1.18.3" description = "Yet another URL library" +category = "main" optional = false python-versions = ">=3.9" files = [ @@ -2245,4 +2332,4 @@ propcache = ">=0.2.0" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "bb19761e97e1c45c99e257a2f3599594aebab6bc06a0ba1951a6ad1727c31d62" +content-hash = "21cb4efdfeedffeac02c47e0e53c8fa5e296badf0f246a4f72738eb878ebcc21" diff --git a/code/episode_5/pyproject.toml b/code/episode_5/pyproject.toml index 5eacd65ab50d423108a76ec3e3941a6154dc568a..1237ea40b957fb394428887384e87c22450d4f15 100755 --- a/code/episode_5/pyproject.toml +++ b/code/episode_5/pyproject.toml @@ -1,7 +1,7 @@ [tool.poetry] name = "nova-tutorial" version = "0.1.0" -description = "Template application" +description = "Nova Tutorial Project" authors = [] readme = "README.md" license = "MIT" @@ -14,10 +14,8 @@ packages = [ [tool.poetry.dependencies] python = "^3.10" -nova-galaxy = "^0.4.0" -nova-mvvm = "0.8.0" -nova-trame = "0.14.0" - +nova-trame = "*" +nova-galaxy = "^0.7.0" [build-system] requires = ["poetry-core"] @@ -90,4 +88,4 @@ sphinxcontrib-napoleon ="*" tomli = "*" [tool.poetry.scripts] -app = "nova_tutorial:main" +app = "nova_tutorial.app:main" diff --git a/code/episode_5/src/nova_tutorial/__init__.py b/code/episode_5/src/nova_tutorial/__init__.py index 1a91a49b5a89c92f36d36cc1989d27c35d77e759..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 100755 --- a/code/episode_5/src/nova_tutorial/__init__.py +++ b/code/episode_5/src/nova_tutorial/__init__.py @@ -1,7 +0,0 @@ -import importlib.metadata - -from .main import main - -__all__ = ["main"] - -__version__ = importlib.metadata.version(__package__) diff --git a/code/episode_5/src/nova_tutorial/app/__init__.py b/code/episode_5/src/nova_tutorial/app/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..2779e152ee33d75c63a76398fb972b5f7ef72209 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/__init__.py @@ -0,0 +1,5 @@ +from .main import main + +__all__ = [ + "main", +] diff --git a/code/episode_5/src/nova_tutorial/__main__.py b/code/episode_5/src/nova_tutorial/app/__main__.py similarity index 100% rename from code/episode_5/src/nova_tutorial/__main__.py rename to code/episode_5/src/nova_tutorial/app/__main__.py diff --git a/code/episode_5/src/nova_tutorial/app/main.py b/code/episode_5/src/nova_tutorial/app/main.py new file mode 100755 index 0000000000000000000000000000000000000000..add49c1138d458f114cf3804dae7bc507d8446f4 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/main.py @@ -0,0 +1,18 @@ +"""Main Application.""" + +import sys +from .models.fractal import Fractal + + +def main() -> None: + kwargs = {} + from .views.main import MainApp + + app = MainApp() + for arg in sys.argv[2:]: + try: + key, value = arg.split("=") + kwargs[key] = int(value) + except Exception: + pass + app.server.start(**kwargs) diff --git a/code/episode_5/src/nova_tutorial/app/models/__init__.py b/code/episode_5/src/nova_tutorial/app/models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_3/src/nova_tutorial/models/fractal.py b/code/episode_5/src/nova_tutorial/app/models/fractal.py similarity index 54% rename from code/episode_3/src/nova_tutorial/models/fractal.py rename to code/episode_5/src/nova_tutorial/app/models/fractal.py index 39ff1fd06a65301eea67d1fcda14afedc778e960..2a06b71be29270a709781ecc1ab27afb466cefeb 100755 --- a/code/episode_3/src/nova_tutorial/models/fractal.py +++ b/code/episode_5/src/nova_tutorial/app/models/fractal.py @@ -1,12 +1,12 @@ import os -from nova.galaxy import Nova, Parameters, Tool +from pydantic import BaseModel, Field +from nova.galaxy import Connection, Parameters, Tool -class Fractal: - def __init__(self): - self.fractal_type = "mandelbrot" # Default fractal type - self.galaxy_url = os.getenv("GALAXY_URL") - self.galaxy_key = os.getenv("GALAXY_API_KEY") +class Fractal(BaseModel): + fractal_type: str = Field(default="mandelbrot", description="Type of fractal to generate") + galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") + galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") def set_fractal_type(self, fractal_type: str): self.fractal_type = fractal_type @@ -18,12 +18,11 @@ class Fractal: "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." ) - nova = Nova(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) tool = Tool(id="neutrons_fractal") params = Parameters() - #params.add_input(name="option", value=self.fractal_type) - with nova.connect() as galaxy_connection: + with conn.connect() as galaxy_connection: data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() tool.run(data_store, params) diff --git a/code/episode_5/src/nova_tutorial/app/models/main_model.py b/code/episode_5/src/nova_tutorial/app/models/main_model.py new file mode 100755 index 0000000000000000000000000000000000000000..1aa45abc2ff84e7ec433caa2937b890e9a4b9257 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/models/main_model.py @@ -0,0 +1,25 @@ +"""Module for the main model.""" + +from pydantic import BaseModel, Field +from .fractal import Fractal + + +class MainModel(BaseModel): + """ + A model class. + + This class uses Pydantic (https://docs.pydantic.dev/latest/), + which allows for defining data validation rules, + titles, descriptions, and examples that can be used in GUI elements or + other interfaces for improved clarity and usability. + """ + + username: str = Field( + default="test_name", + min_length=1, + title="User Name", + description="Please provide the name of the user", + examples=["user"], + ) + password: str = Field(default="test_password", title="User Password") + fractal: Fractal = Field(default_factory=Fractal) diff --git a/code/episode_5/src/nova_tutorial/app/mvvm_factory.py b/code/episode_5/src/nova_tutorial/app/mvvm_factory.py new file mode 100755 index 0000000000000000000000000000000000000000..3b56e2b6451e3d099b1e15422f551b0b340ceb4f --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/mvvm_factory.py @@ -0,0 +1,15 @@ +"""Module for the factory that creates viewmodels used in the application.""" + +from nova.mvvm.interface import BindingInterface + +from .models.main_model import MainModel +from .view_models.main import MainViewModel + + +def create_viewmodels(binding: BindingInterface) -> dict: + model = MainModel() + vm: dict = {} + vm["main"] = MainViewModel(model, binding) + print(vm["main"].model.fractal.galaxy_key) + + return vm diff --git a/code/episode_5/src/nova_tutorial/app/view_models/__init__.py b/code/episode_5/src/nova_tutorial/app/view_models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_5/src/nova_tutorial/app/view_models/main.py b/code/episode_5/src/nova_tutorial/app/view_models/main.py new file mode 100755 index 0000000000000000000000000000000000000000..1bceca836b7166a06d940c777c419abbaa16ffbb --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/view_models/main.py @@ -0,0 +1,33 @@ +"""Module for the main ViewModel.""" + +from typing import Any, Dict + +from nova.mvvm.interface import BindingInterface + +from ..models.main_model import MainModel + + +class MainViewModel: + """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" + + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + + # here we create a bind that connects ViewModel with View. It returns a communicator object, + # that allows to update View from ViewModel (by calling update_view). + # self.model will be updated automatically on changes of connected fields in View, + # but one also can provide a callback function if they want to react to those events + # and/or process errors. + self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) + + def change_callback(self, results: Dict[str, Any]) -> None: + if results["error"]: + print(f"error in fields {results['errored']}, model not changed") + else: + print(f"model fields updated: {results['updated']}") + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model) + + def run_fractal(self) -> None: + self.model.fractal.run_fractal_tool() diff --git a/code/episode_5/src/nova_tutorial/app/views/__init__.py b/code/episode_5/src/nova_tutorial/app/views/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py b/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py new file mode 100755 index 0000000000000000000000000000000000000000..465deb9b75eddc5c4b5b5fbc7befa85481aeac1e --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/fractal_tab.py @@ -0,0 +1,25 @@ +from trame.widgets import vuetify3 as vuetify + +from nova.trame.view.components import InputField +from nova_tutorial.app.view_models.main import MainViewModel +from nova.trame.view import layouts + +class FractalTab: + + def __init__(self, view_model: MainViewModel) -> None: + self.view_model = view_model + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-4"): + with vuetify.VCard(classes="pa-4"): + InputField( + v_model=("config.fractal.fractal_type", "mandelbrot"), + label="Fractal Type", + ) + vuetify.VBtn( + "Run Fractal", + click=self.view_model.run_fractal, + classes="mt-2", + ) + vuetify.VCardText(v_text="config.status_message", classes="mt-2") \ No newline at end of file diff --git a/code/episode_5/src/nova_tutorial/app/views/main.py b/code/episode_5/src/nova_tutorial/app/views/main.py new file mode 100755 index 0000000000000000000000000000000000000000..2000c009d154074f7355eba4f5bc53a6beb60144 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/main.py @@ -0,0 +1,45 @@ +"""Main file.""" + +import logging + +from nova.mvvm.trame_binding import TrameBinding +from nova.trame import ThemedApp +from trame.app import get_server + +from ..mvvm_factory import create_viewmodels +from ..view_models.main import MainViewModel +from .tab_content_panel import TabContentPanel +from .tabs_panel import TabsPanel + + +logger = logging.getLogger(__name__) +logger.setLevel(logging.INFO) + + +class MainApp(ThemedApp): + """Main application view class. Calls rendering of nested UI elements.""" + + def __init__(self) -> None: + super().__init__() + self.server = get_server(None, client_type="vue3") + binding = TrameBinding(self.server.state) + self.server.state.trame__title = "Nova Tutorial" + self.view_models = create_viewmodels(binding) + self.view_model: MainViewModel = self.view_models["main"] + self.create_ui() + + def create_ui(self) -> None: + self.state.trame__title = "Nova Tutorial" + + with super().create_ui() as layout: + layout.toolbar_title.set_text("Nova Tutorial") + with layout.pre_content: + TabsPanel(self.view_models["main"]) + with layout.content: + TabContentPanel( + self.server, + self.view_models["main"], + ) + with layout.post_content: + pass + return layout diff --git a/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py new file mode 100755 index 0000000000000000000000000000000000000000..517ee23614e2668475f1639d2d11a5ee130f8b82 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/sample_tab_1.py @@ -0,0 +1,20 @@ +"""Module for the Sample Tab 1.""" + +from nova.trame.view.components import InputField +from nova.trame.view import layouts +from trame.widgets import vuetify3 as vuetify + +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-2"): # Overall vertical layout + InputField(v_model="config.username", label="Username") + with layouts.HBoxLayout(): # Horizontal layout for first and last name + InputField(v_model="config.firstName", label="First Name") + InputField(v_model="config.lastName", label="Last Name") + vuetify.VCheckbox(label="Remember me") + vuetify.VSwitch(label="Enable Notifications") \ No newline at end of file diff --git a/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py new file mode 100755 index 0000000000000000000000000000000000000000..da4746cf11110b14461c0c3ea9abfe4983050f02 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/sample_tab_2.py @@ -0,0 +1,25 @@ +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField +from nova.trame.view import layouts +from trame.widgets import vuetify3 as vuetify + + +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-2"): # Parent vertical layout + with layouts.HBoxLayout(): # Horizontal layout for email and phone + InputField(v_model="config.email", label="Email", type="email") + InputField(v_model="config.phoneNumber", label="Phone Number", type="tel") + with layouts.GridLayout(columns=2): # Two column grid layout for remaining fields + vuetify.VSlider(label="Volume") + with layouts.VBoxLayout(classes="ma-2"): # Overall vertical layout + vuetify.VLabel("Item 1", classes="bg-primary h-100 w-100 justify-center") + vuetify.VLabel("Item 2", classes="bg-secondary h-100 w-100 justify-center") + InputField(v_model="config.address", label="Address") + InputField(v_model="config.comments", label="Comments") diff --git a/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..ab67bd6348f894617b8a1ddee53f3631c654932e --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/tab_content_panel.py @@ -0,0 +1,31 @@ +"""Module for the Tab Content panel.""" + +from trame.widgets import vuetify3 as vuetify +from trame_server import Server + +from ..view_models.main import MainViewModel +from .sample_tab_1 import SampleTab1 +from .sample_tab_2 import SampleTab2 +from .fractal_tab import FractalTab # Import the FractalTab + +class TabContentPanel: + """View class to render content for a selected tab.""" + + def __init__(self, server: Server, view_model: MainViewModel) -> None: + self.view_model = view_model + self.server = server + self.ctrl = server.controller + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VForm(ref="form") as self.f: + with vuetify.VContainer(classes="pa-0", fluid=True): + with vuetify.VCard(): + with vuetify.VWindow(v_model="active_tab"): + with vuetify.VWindowItem(value=1): + FractalTab(self.view_model) # Add FractalTab + with vuetify.VWindowItem(value=2): + SampleTab1() + with vuetify.VWindowItem(value=3): + SampleTab2() + diff --git a/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..ac1f6ab373929ec6d69ade1d1d6bc8028bd1e680 --- /dev/null +++ b/code/episode_5/src/nova_tutorial/app/views/tabs_panel.py @@ -0,0 +1,21 @@ +"""Module for the Tab panel.""" + +from trame.widgets import vuetify3 as vuetify + +from ..view_models.main import MainViewModel + + +class TabsPanel: + """View class to render tabs.""" + + def __init__(self, view_model: MainViewModel): + self.view_model = view_model + self.view_model.config_bind.connect("config") + #self.view_model.fractal_bind.connect("fractal") + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): + vuetify.VTab("Fractal", value=1) # Add Fractal Tab + vuetify.VTab("Sample Tab 1", value=2) + vuetify.VTab("Sample Tab 2", value=3) diff --git a/code/episode_5/src/nova_tutorial/main.py b/code/episode_5/src/nova_tutorial/main.py deleted file mode 100755 index 0567ffc84679b0cd3f674841067a573ffd4fe99f..0000000000000000000000000000000000000000 --- a/code/episode_5/src/nova_tutorial/main.py +++ /dev/null @@ -1,8 +0,0 @@ -from nova_tutorial.views.fractal_view import FractalApp - -def main(): - app = FractalApp() - app.server.start() - -if __name__ == "__main__": - main() \ No newline at end of file diff --git a/code/episode_5/src/nova_tutorial/view_models/fractal_view_model.py b/code/episode_5/src/nova_tutorial/view_models/fractal_view_model.py deleted file mode 100755 index 850d4f9f726b66fb661be8967f2640c5c0cb81ac..0000000000000000000000000000000000000000 --- a/code/episode_5/src/nova_tutorial/view_models/fractal_view_model.py +++ /dev/null @@ -1,60 +0,0 @@ -import os -from nova.mvvm.interface import BindingInterface -from pydantic import BaseModel, Field,ValidationError -from typing import Literal - -from ..models.fractal import Fractal - - -class FractalToolInput(BaseModel): - fractal_type: Literal["mandelbrot", "julia", "random", "markus"] = Field(default="mandelbrot") - - -class FractalViewModel(): - def __init__(self, binding: BindingInterface): - super().__init__() - self.fractal = Fractal() - - self._fractal_type = FractalToolInput() - self._job_status:dict[str, Any] = {} - self._message: str = "" - - self.job_status_bind = binding.new_bind( - linked_object=self._job_status - ) - self.message_bind = binding.new_bind( - linked_object=self._message, - ) - self.fractal_type_bind = binding.new_bind( - linked_object=self._fractal_type, - ) - - - def init_view(self): - self._job_status["fractal"] = "Starting" - self.job_status_bind.update_in_view(self._job_status) - - def set_fractal_type(self, fractal_type: str): - try: - FractalToolInput(fractal_type=fractal_type) - except ValidationError as e: - self._message = f"Validation Error: {e}" - self.message_bind.update_in_view(self) - return - self._fractal_type = fractal_type - print(f"Set new fractal type to: {self._fractal_type}") - - def run_fractal_tool(self): - self._job_status["fractal"] = "Starting" - self.fractal_type_bind.update_in_view(self._fractal_type) - self.job_status_bind.update_in_view(self._job_status) - try: - self.fractal.set_fractal_type(self._fractal_type.fractal_type) - self.fractal.run_fractal_tool() - self._message = "Fractal tool finished successfully." - except Exception as e: - self._message = f"Error running fractal tool: {e}" - raise e - finally: - self._job_status["fractal"] = "" - self.job_status_bind.update_in_view(self._job_status) \ No newline at end of file diff --git a/code/episode_5/src/nova_tutorial/views/fractal_view.py b/code/episode_5/src/nova_tutorial/views/fractal_view.py deleted file mode 100755 index 819d5bdb08676b676321c7882477456669b2cc57..0000000000000000000000000000000000000000 --- a/code/episode_5/src/nova_tutorial/views/fractal_view.py +++ /dev/null @@ -1,42 +0,0 @@ -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp -from nova.trame.view import layouts -from trame.app import get_server -from trame.widgets import vuetify3 as vuetify -from nova_tutorial.view_models.fractal_view_model import FractalViewModel - -class FractalApp(ThemedApp): # Inherits from nova.trame.ThemedApp for consistent styling - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - self.fractal_vm = FractalViewModel(TrameBinding(self.server.state)) - self.fractal_vm.fractal_type_bind.connect("fractal_type") - self.fractal_vm.message_bind.connect("fractal_message") - self.fractal_vm.job_status_bind.connect("job_status") - #self.fractal_vm.init_view() - self.create_ui() - - def create_ui(self) -> None: - self.state.trame__title = "NOVA Tutorial" - with super().create_ui() as layout: - with layout.content: - with layouts.VBoxLayout(classes="ma-2"): - with vuetify.VCard(classes="pa-2"): - with vuetify.VRadioGroup( - v_model=("fractal_type"), - classes="mb-2", - #update_modelValue=self.fractal_vm.set_fractal_type(model_value) - ): - vuetify.VRadio(label="Mandelbrot", value="mandelbrot") - vuetify.VRadio(label="Julia", value="julia") - vuetify.VRadio(label="Random", value="random") - vuetify.VRadio(label="Markus", value="markus") - vuetify.VBtn( - "Run Fractal Tool", - v_model="job_status", - click=self.fractal_vm.run_fractal_tool, - #disabled=("job_status['fractal'] == 'Starting'"), - classes="mb-2" - ) - vuetify.VCardText(v_model=("fractal_message")) - return layout \ No newline at end of file diff --git a/code/episode_6/README.md 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"sha256:ac1801c45cbf77b6c99242eeff4fffb5e4e73a800b5c4ad4fc0be5def634d2e1"}, +] + +[package.dependencies] +idna = ">=2.0" +multidict = ">=4.0" +propcache = ">=0.2.0" + +[metadata] +lock-version = "2.0" +python-versions = "^3.10" +content-hash = "21cb4efdfeedffeac02c47e0e53c8fa5e296badf0f246a4f72738eb878ebcc21" diff --git a/code/episode_6/pyproject.toml b/code/episode_6/pyproject.toml new file mode 100755 index 0000000000000000000000000000000000000000..1237ea40b957fb394428887384e87c22450d4f15 --- /dev/null +++ b/code/episode_6/pyproject.toml @@ -0,0 +1,91 @@ +[tool.poetry] +name = "nova-tutorial" +version = "0.1.0" +description = "Nova Tutorial Project" +authors = [] +readme = "README.md" +license = "MIT" +keywords = ["NDIP", "NOVA", "python"] + +packages = [ + { include = "nova_tutorial", from = "src" } +] + + +[tool.poetry.dependencies] +python = "^3.10" +nova-trame = "*" +nova-galaxy = "^0.7.0" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + + +[tool.pytest.ini_options] +testpaths = ["tests"] +python_files = ["test*.py"] +norecursedirs = [".git", "tmp*", "_tmp*", "__pycache__"] + +[tool.ruff] +line-length = 120 + +[tool.ruff.lint] +select = [ + "E", # pycodestyle errors + "W", # pycodestyle warnings + "F", # pyflakes + "I", # isort + "B", # flake8-bugbear + "C4", # flake8-comprehensions + "N", # PEP8 naming convetions + "D" # pydocstyle +] +ignore = [ + "C901", # too complex + "D102", # Missing docstring in public function + "D103", # Missing docstring in public method + "D401" # imperative mood + +] + +[tool.ruff.lint.extend-per-file-ignores] +'__init__.py' = ['D104'] # Missing docstring in public package + + + +[tool.ruff.lint.pydocstyle] +convention = "numpy" + +[tool.mypy] +ignore_missing_imports = false +check_untyped_defs = true +disallow_untyped_defs = true +ignore_errors = false +disable_error_code = ["import-untyped"] +# You can exclude files with the following (ONLY WHEN NECESSARY) +# exclude = ["path/to/file"] + +[tool.coverage.report] +omit = [ + '*__init__*', # __init__ files should just re-export other classes and functions +] + +[tool.coverage.run] +command_line = "-m pytest --junit-xml=reports/junit.xml" +data_file = "reports/.coverage" + +[tool.poetry.dev-dependencies] +mypy = ">=1.10.0" +pre-commit = ">=2.20.0" +coverage = ">=6.4.3" +pytest = "*" +ruff = ">=0.6.2" +copier=">=9.3" +sphinx = "*" +sphinx-rtd-theme = "*" +sphinxcontrib-napoleon ="*" +tomli = "*" + +[tool.poetry.scripts] +app = "nova_tutorial.app:main" diff --git a/code/episode_6/src/nova_tutorial/__init__.py b/code/episode_6/src/nova_tutorial/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_6/src/nova_tutorial/app/__init__.py b/code/episode_6/src/nova_tutorial/app/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..2779e152ee33d75c63a76398fb972b5f7ef72209 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/__init__.py @@ -0,0 +1,5 @@ +from .main import main + +__all__ = [ + "main", +] diff --git a/code/episode_6/src/nova_tutorial/app/__main__.py b/code/episode_6/src/nova_tutorial/app/__main__.py new file mode 100755 index 0000000000000000000000000000000000000000..d87b5a1f216d3297fc3699024e7d46e843397df7 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/__main__.py @@ -0,0 +1,5 @@ +"""Entry point for the Package.""" + +from . import main + +main() diff --git a/code/episode_6/src/nova_tutorial/app/main.py b/code/episode_6/src/nova_tutorial/app/main.py new file mode 100755 index 0000000000000000000000000000000000000000..add49c1138d458f114cf3804dae7bc507d8446f4 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/main.py @@ -0,0 +1,18 @@ +"""Main Application.""" + +import sys +from .models.fractal import Fractal + + +def main() -> None: + kwargs = {} + from .views.main import MainApp + + app = MainApp() + for arg in sys.argv[2:]: + try: + key, value = arg.split("=") + kwargs[key] = int(value) + except Exception: + pass + app.server.start(**kwargs) diff --git a/code/episode_6/src/nova_tutorial/app/models/__init__.py b/code/episode_6/src/nova_tutorial/app/models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_5/src/nova_tutorial/models/fractal.py b/code/episode_6/src/nova_tutorial/app/models/fractal.py similarity index 54% rename from code/episode_5/src/nova_tutorial/models/fractal.py rename to code/episode_6/src/nova_tutorial/app/models/fractal.py index d46e1d59b914d2f373f40390691ef3dcd829c43a..2a06b71be29270a709781ecc1ab27afb466cefeb 100755 --- a/code/episode_5/src/nova_tutorial/models/fractal.py +++ b/code/episode_6/src/nova_tutorial/app/models/fractal.py @@ -1,12 +1,12 @@ import os -from nova.galaxy import Nova, Parameters, Tool +from pydantic import BaseModel, Field +from nova.galaxy import Connection, Parameters, Tool -class Fractal: - def __init__(self): - self.fractal_type = "mandelbrot" # Default fractal type - self.galaxy_url = os.getenv("GALAXY_URL") - self.galaxy_key = os.getenv("GALAXY_API_KEY") +class Fractal(BaseModel): + fractal_type: str = Field(default="mandelbrot", description="Type of fractal to generate") + galaxy_url: str = Field(default_factory=lambda: os.getenv("GALAXY_URL"), description="NDIP Galaxy URL") + galaxy_key: str = Field(default_factory=lambda: os.getenv("GALAXY_API_KEY"), description="NDIP Galaxy API Key") def set_fractal_type(self, fractal_type: str): self.fractal_type = fractal_type @@ -18,12 +18,11 @@ class Fractal: "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." ) - nova = Nova(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) + conn = Connection(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) tool = Tool(id="neutrons_fractal") params = Parameters() - params.add_input(name="option", value=self.fractal_type) - with nova.connect() as galaxy_connection: + with conn.connect() as galaxy_connection: data_store = galaxy_connection.create_data_store(name="fractal_store") data_store.persist() tool.run(data_store, params) diff --git a/code/episode_6/src/nova_tutorial/app/models/main_model.py b/code/episode_6/src/nova_tutorial/app/models/main_model.py new file mode 100755 index 0000000000000000000000000000000000000000..2ff8cbb88cfef6daa58c91f8dcb1c1ea48cca2c3 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/models/main_model.py @@ -0,0 +1,28 @@ +"""Module for the main model.""" + +from pydantic import BaseModel, Field +from .fractal import Fractal +from .sample_tab_models import SampleTab1Model, SampleTab2Model + + +class MainModel(BaseModel): + """ + A model class. + + This class uses Pydantic (https://docs.pydantic.dev/latest/), + which allows for defining data validation rules, + titles, descriptions, and examples that can be used in GUI elements or + other interfaces for improved clarity and usability. + """ + + username: str = Field( + default="test_name", + min_length=1, + title="User Name", + description="Please provide the name of the user", + examples=["user"], + ) + password: str = Field(default="test_password", title="User Password") + fractal: Fractal = Field(default_factory=Fractal) + sample_tab1: SampleTab1Model = Field(default_factory=SampleTab1Model) + sample_tab2: SampleTab2Model = Field(default_factory=SampleTab2Model) \ No newline at end of file diff --git a/code/episode_6/src/nova_tutorial/app/models/sample_tab_models.py b/code/episode_6/src/nova_tutorial/app/models/sample_tab_models.py new file mode 100755 index 0000000000000000000000000000000000000000..5bedf753364909888e7e58f7a69fb38357c13774 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/models/sample_tab_models.py @@ -0,0 +1,19 @@ +from pydantic import BaseModel, Field + +class SampleTab1Model(BaseModel): + """Data model for Sample Tab 1.""" + username: str = Field(default="test_user", min_length=3, title="Username", description="Your username.") + firstName: str = Field(default="", pattern="^[a-zA-Z]+$", title="First Name") + lastName: str = Field(default="", pattern="^[a-zA-Z]+$", title="Last Name") + rememberMe: bool = Field(default=False, title="Remember Me") + enableNotifications: bool = Field(default=True, title="Enable Notifications") + +class SampleTab2Model(BaseModel): + """Data model for Sample Tab 2.""" + password: str = Field(default="password", min_length=8, title="Password", description="Your password (minimum 8 characters).") + volume: int = Field(default=50, ge=0, le=100, title="Volume", description="Audio volume (0-100).") + email: str = Field(default="test@example.com", pattern=r"^[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}$", title="Email", description="Your email address.") + phoneNumber: str = Field(default="", title="Phone Number", description="Your phone number.") + address: str = Field(default="", title="Address", description="Your street address.") + comments: str = Field(default="", title="Comments", description="Any comments you want to leave.") + selectAnOption: str = Field(default="Option 1", title="Selection Option", description="The selected option.") \ No newline at end of file diff --git a/code/episode_6/src/nova_tutorial/app/mvvm_factory.py b/code/episode_6/src/nova_tutorial/app/mvvm_factory.py new file mode 100755 index 0000000000000000000000000000000000000000..3b56e2b6451e3d099b1e15422f551b0b340ceb4f --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/mvvm_factory.py @@ -0,0 +1,15 @@ +"""Module for the factory that creates viewmodels used in the application.""" + +from nova.mvvm.interface import BindingInterface + +from .models.main_model import MainModel +from .view_models.main import MainViewModel + + +def create_viewmodels(binding: BindingInterface) -> dict: + model = MainModel() + vm: dict = {} + vm["main"] = MainViewModel(model, binding) + print(vm["main"].model.fractal.galaxy_key) + + return vm diff --git a/code/episode_6/src/nova_tutorial/app/view_models/__init__.py b/code/episode_6/src/nova_tutorial/app/view_models/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_6/src/nova_tutorial/app/view_models/main.py b/code/episode_6/src/nova_tutorial/app/view_models/main.py new file mode 100755 index 0000000000000000000000000000000000000000..1bceca836b7166a06d940c777c419abbaa16ffbb --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/view_models/main.py @@ -0,0 +1,33 @@ +"""Module for the main ViewModel.""" + +from typing import Any, Dict + +from nova.mvvm.interface import BindingInterface + +from ..models.main_model import MainModel + + +class MainViewModel: + """Viewmodel class, used to create data<->view binding and react on changes from GUI.""" + + def __init__(self, model: MainModel, binding: BindingInterface): + self.model = model + + # here we create a bind that connects ViewModel with View. It returns a communicator object, + # that allows to update View from ViewModel (by calling update_view). + # self.model will be updated automatically on changes of connected fields in View, + # but one also can provide a callback function if they want to react to those events + # and/or process errors. + self.config_bind = binding.new_bind(self.model, callback_after_update=self.change_callback) + + def change_callback(self, results: Dict[str, Any]) -> None: + if results["error"]: + print(f"error in fields {results['errored']}, model not changed") + else: + print(f"model fields updated: {results['updated']}") + + def update_view(self) -> None: + self.config_bind.update_in_view(self.model) + + def run_fractal(self) -> None: + self.model.fractal.run_fractal_tool() diff --git a/code/episode_6/src/nova_tutorial/app/views/__init__.py b/code/episode_6/src/nova_tutorial/app/views/__init__.py new file mode 100755 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/code/episode_6/src/nova_tutorial/app/views/fractal_tab.py b/code/episode_6/src/nova_tutorial/app/views/fractal_tab.py new file mode 100755 index 0000000000000000000000000000000000000000..465deb9b75eddc5c4b5b5fbc7befa85481aeac1e --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/fractal_tab.py @@ -0,0 +1,25 @@ +from trame.widgets import vuetify3 as vuetify + +from nova.trame.view.components import InputField +from nova_tutorial.app.view_models.main import MainViewModel +from nova.trame.view import layouts + +class FractalTab: + + def __init__(self, view_model: MainViewModel) -> None: + self.view_model = view_model + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-4"): + with vuetify.VCard(classes="pa-4"): + InputField( + v_model=("config.fractal.fractal_type", "mandelbrot"), + label="Fractal Type", + ) + vuetify.VBtn( + "Run Fractal", + click=self.view_model.run_fractal, + classes="mt-2", + ) + vuetify.VCardText(v_text="config.status_message", classes="mt-2") \ No newline at end of file diff --git a/code/episode_6/src/nova_tutorial/app/views/main.py b/code/episode_6/src/nova_tutorial/app/views/main.py new file mode 100755 index 0000000000000000000000000000000000000000..2000c009d154074f7355eba4f5bc53a6beb60144 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/main.py @@ -0,0 +1,45 @@ +"""Main file.""" + +import logging + +from nova.mvvm.trame_binding import TrameBinding +from nova.trame import ThemedApp +from trame.app import get_server + +from ..mvvm_factory import create_viewmodels +from ..view_models.main import MainViewModel +from .tab_content_panel import TabContentPanel +from .tabs_panel import TabsPanel + + +logger = logging.getLogger(__name__) +logger.setLevel(logging.INFO) + + +class MainApp(ThemedApp): + """Main application view class. Calls rendering of nested UI elements.""" + + def __init__(self) -> None: + super().__init__() + self.server = get_server(None, client_type="vue3") + binding = TrameBinding(self.server.state) + self.server.state.trame__title = "Nova Tutorial" + self.view_models = create_viewmodels(binding) + self.view_model: MainViewModel = self.view_models["main"] + self.create_ui() + + def create_ui(self) -> None: + self.state.trame__title = "Nova Tutorial" + + with super().create_ui() as layout: + layout.toolbar_title.set_text("Nova Tutorial") + with layout.pre_content: + TabsPanel(self.view_models["main"]) + with layout.content: + TabContentPanel( + self.server, + self.view_models["main"], + ) + with layout.post_content: + pass + return layout diff --git a/code/episode_6/src/nova_tutorial/app/views/sample_tab_1.py b/code/episode_6/src/nova_tutorial/app/views/sample_tab_1.py new file mode 100755 index 0000000000000000000000000000000000000000..c298c7f463901f3542428cf16607a138cd754d96 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/sample_tab_1.py @@ -0,0 +1,20 @@ +"""Module for the Sample Tab 1.""" + +from nova.trame.view.components import InputField +from nova.trame.view import layouts +from trame.widgets import vuetify3 as vuetify + +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-2"): # Overall vertical layout + InputField(v_model="config.sample_tab1.username", label="Username") + with layouts.HBoxLayout(): # Horizontal layout for first and last name + InputField(v_model="config.sample_tab1.firstName", label="First Name") + InputField(v_model="config.sample_tab1.lastName", label="Last Name") + vuetify.VCheckbox(label="Remember me", v_model="config.sample_tab1.rememberMe") + vuetify.VSwitch(label="Enable Notifications", v_model="config.sample_tab1.enableNotifications") \ No newline at end of file diff --git a/code/episode_6/src/nova_tutorial/app/views/sample_tab_2.py b/code/episode_6/src/nova_tutorial/app/views/sample_tab_2.py new file mode 100755 index 0000000000000000000000000000000000000000..e128971672b40516436c7968e81012e373189ae0 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/sample_tab_2.py @@ -0,0 +1,25 @@ +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField +from nova.trame.view import layouts +from trame.widgets import vuetify3 as vuetify + + +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + + def __init__(self) -> None: + self.create_ui() + + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-2"): # Parent vertical layout + with layouts.HBoxLayout(): # Horizontal layout for email and phone + InputField(v_model="config.sample_tab2.email", label="Email", type="email") + InputField(v_model="config.sample_tab2.phoneNumber", label="Phone Number", type="tel") + with layouts.GridLayout(columns=2): # Two column grid layout for remaining fields + vuetify.VSlider(label="Volume") + with layouts.VBoxLayout(classes="ma-2"): # Overall vertical layout + vuetify.VLabel("Item 1", classes="bg-primary h-100 w-100 justify-center") + vuetify.VLabel("Item 2", classes="bg-secondary h-100 w-100 justify-center") + InputField(v_model="config.address", label="Address") + InputField(v_model="config.comments", label="Comments") \ No newline at end of file diff --git a/code/episode_6/src/nova_tutorial/app/views/tab_content_panel.py b/code/episode_6/src/nova_tutorial/app/views/tab_content_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..ab67bd6348f894617b8a1ddee53f3631c654932e --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/tab_content_panel.py @@ -0,0 +1,31 @@ +"""Module for the Tab Content panel.""" + +from trame.widgets import vuetify3 as vuetify +from trame_server import Server + +from ..view_models.main import MainViewModel +from .sample_tab_1 import SampleTab1 +from .sample_tab_2 import SampleTab2 +from .fractal_tab import FractalTab # Import the FractalTab + +class TabContentPanel: + """View class to render content for a selected tab.""" + + def __init__(self, server: Server, view_model: MainViewModel) -> None: + self.view_model = view_model + self.server = server + self.ctrl = server.controller + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VForm(ref="form") as self.f: + with vuetify.VContainer(classes="pa-0", fluid=True): + with vuetify.VCard(): + with vuetify.VWindow(v_model="active_tab"): + with vuetify.VWindowItem(value=1): + FractalTab(self.view_model) # Add FractalTab + with vuetify.VWindowItem(value=2): + SampleTab1() + with vuetify.VWindowItem(value=3): + SampleTab2() + diff --git a/code/episode_6/src/nova_tutorial/app/views/tabs_panel.py b/code/episode_6/src/nova_tutorial/app/views/tabs_panel.py new file mode 100755 index 0000000000000000000000000000000000000000..ac1f6ab373929ec6d69ade1d1d6bc8028bd1e680 --- /dev/null +++ b/code/episode_6/src/nova_tutorial/app/views/tabs_panel.py @@ -0,0 +1,21 @@ +"""Module for the Tab panel.""" + +from trame.widgets import vuetify3 as vuetify + +from ..view_models.main import MainViewModel + + +class TabsPanel: + """View class to render tabs.""" + + def __init__(self, view_model: MainViewModel): + self.view_model = view_model + self.view_model.config_bind.connect("config") + #self.view_model.fractal_bind.connect("fractal") + self.create_ui() + + def create_ui(self) -> None: + with vuetify.VTabs(v_model=("active_tab", 0), classes="pl-5"): + vuetify.VTab("Fractal", value=1) # Add Fractal Tab + vuetify.VTab("Sample Tab 1", value=2) + vuetify.VTab("Sample Tab 2", value=3) diff --git a/code/episode_7/README.md b/code/episode_7/README.md old mode 100644 new mode 100755 diff --git a/code/episode_7/pyproject.toml b/code/episode_7/pyproject.toml old mode 100644 new mode 100755 index 4f452f8aefa570f6eaf84b70028d2c514cb4985b..9dde56fb283fe0b05fb882b5c930a582a124eb96 --- a/code/episode_7/pyproject.toml +++ b/code/episode_7/pyproject.toml @@ -14,7 +14,7 @@ packages = [ [tool.poetry.dependencies] python = "^3.10" -nova-galaxy = "^0.4.0" +nova-galaxy = "^0.7.0" nova-mvvm = "0.9.0" nova-trame = "0.14.0" pandas = "^2.2.3" diff --git a/code/episode_7/src/nova_tutorial/__init__.py b/code/episode_7/src/nova_tutorial/__init__.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/__main__.py b/code/episode_7/src/nova_tutorial/__main__.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/main.py b/code/episode_7/src/nova_tutorial/main.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/models/plotly.py b/code/episode_7/src/nova_tutorial/models/plotly.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/models/pyvista.py b/code/episode_7/src/nova_tutorial/models/pyvista.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/models/vtk.py b/code/episode_7/src/nova_tutorial/models/vtk.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/view_models/visualization.py b/code/episode_7/src/nova_tutorial/view_models/visualization.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/views/plotly.py b/code/episode_7/src/nova_tutorial/views/plotly.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/views/pyvista.py b/code/episode_7/src/nova_tutorial/views/pyvista.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/views/visualization.py b/code/episode_7/src/nova_tutorial/views/visualization.py old mode 100644 new mode 100755 diff --git a/code/episode_7/src/nova_tutorial/views/vtk.py b/code/episode_7/src/nova_tutorial/views/vtk.py old mode 100644 new mode 100755 diff --git a/episodes/01-Introduction.md b/episodes/01-Introduction.md index 4ac54f1c1c0b07bd304ffea0d0242c1e0bab90a0..9fd96055462ac970a22c7da7077d599f2ba03419 100755 --- a/episodes/01-Introduction.md +++ b/episodes/01-Introduction.md @@ -4,6 +4,25 @@ teaching: 10 exercises: 0 --- +::::::::::::::::::::::::::::::::::::::: objectives + +- Understand the purpose of the NOVA tutorial and its goals. +- Explain the roles of NDIP and NOVA in neutron data analysis. +- Identify the core NOVA libraries and their functionalities. +- Describe the high-level architecture of a NOVA application interacting with NDIP. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- What is the Neutron Data Interpretation Platform (NDIP)? +- What is NOVA, and how does it simplify NDIP application development? +- What are the key components of NOVA, and what problems do they solve? +- How do NOVA libraries interact with the NDIP platform? +- What will I be able to do after completing this tutorial? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + # 1. Introduction to NOVA and NDIP Welcome to the NOVA tutorial! This guide will walk you through the process of building interactive tools for **neutron analysis** using the NOVA platform. You will learn how to create a web application that leverages the NOVA libraries to simplify interaction with the Neutron Data Interpretation Platform (NDIP). @@ -14,14 +33,16 @@ The Neutron Data Interpretation Platform (NDIP) is a workflow management system ## What is NOVA? -NOVA is a platform that aims to simplify the development of applications that interact with NDIP. It consists of three core libraries: +NOVA is a framework that aims to simplify the development of applications that interact with NDIP. It consists of three core libraries: -* **`nova-galaxy`**: This library simplifies interaction with the NDIP platform's APIs. It allows developers to easily connect to NDIP, **submit jobs, handle parameters, and monitor job progress.** +* **`nova-galaxy`**: This library simplifies interaction with the NDIP platform\'s APIs. It allows developers to easily connect to NDIP, **submit jobs, handle parameters, and monitor job progress.** * **`nova-trame`**: This library facilitates the creation of interactive user interfaces using Trame. Trame is a powerful Python framework for building web-based UIs and visualizations. `nova-trame` provides a consistent look and feel for NOVA applications by simplifying interactions with Trame components (such as Vuetify). * **`nova-mvvm`**: This library simplifies implementation of the Model-View-ViewModel (MVVM) design pattern. By utilizing this library, users can create structured applications that are more testable and easier to maintain. +## NDIP and NOVA Together + To better understand how NOVA works with NDIP, consider this simplified architecture: NOTE: THIS WILL BE REPLACED WITH AN ACTUAL DIAGRAM ONCE CHANGES SETTLE @@ -29,7 +50,7 @@ NOTE: THIS WILL BE REPLACED WITH AN ACTUAL DIAGRAM ONCE CHANGES SETTLE User Application (Built with NOVA) | (Leverages) V -NOVA Platform +NOVA Framework +-----------------+ +-----------------+ +-----------------+ | nova-galaxy |---| nova-trame |---| nova-mvvm | (NOVA Libraries) +-----------------+ +-----------------+ +-----------------+ @@ -50,15 +71,21 @@ In this tutorial, you will learn how to use these three core NOVA libraries to b * Submit jobs to NDIP. * Monitor the progress of your submitted jobs. -We'll be using example tools from neutron scattering as a demonstration for this tutorial, however, the lessons learned here can be applied to a wide variety of neutron analysis applications. This hands-on tutorial will guide you through each step of the process, empowering you to build your own interactive tools for neutron data analysis and management. +We\'ll be using example tools from neutron scattering as a demonstration for this tutorial, however, the lessons learned here can be applied to a wide variety of neutron analysis applications. This hands-on tutorial will guide you through each step of the process, empowering you to build your own interactive tools for neutron data analysis and management. ## Code Examples Directory All of the code examples used in this tutorial are available in the `code` directory of the tutorial repository. These examples are built upon the template application that you will clone in the next episode. The code is organized by episode, with each episode having its own subdirectory (e.g., `code/episode_2`, `code/episode_3`, etc.). -Each episode's subdirectory contains a complete, self-contained Python project that can be run independently using Poetry. This allows you to easily explore the code examples, run them, and modify them as you go through the tutorial. +Each episode\'s subdirectory contains a complete, self-contained Python project that can be run independently using Poetry. This allows you to easily explore the code examples, run them, and modify them as you go through the tutorial. -To run the code for a specific episode, navigate to the episode's directory in your terminal and use the following commands: +::::::::::::::::::::::::::::::::::::::::: callout + +Poetry is a tool for dependency management and packaging in Python. It allows you to declare the libraries your project depends on, and it will manage the installation and updating of those dependencies. Poetry also helps you create reproducible builds by locking the versions of your dependencies. It also makes it easier to publish and share your Python projects. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +To run the code for a specific episode, navigate to the episode\'s directory in your terminal and use the following commands: ```bash cd code/episode_X # Replace X with the episode number @@ -68,19 +95,6 @@ poetry run app # Run the application for this episode This structure ensures that each code example is isolated and runnable, making it easier for you to follow along with the tutorial and experiment with the code. -## Prerequisites - -Before starting this tutorial, you will need to have the following: - -* **Basic Python Knowledge:** A basic understanding of Python programming concepts is required. -* **Python Installation:** You must have Python 3.8 or higher installed on your system. -* **Python's `copier` Library** We will be using this library to copy generate a starting application from a template. Can likely be installed using `pip install copier` -* **Poetry:** The code samples provided in this tutorial leverage poetry for dependency management. -* **NDIP Access:** You should have access to a working NDIP system. (Specific details about NDIP access will need to be provided by the instructor.) -* **NOVA Libraries:** The NOVA libraries will be used extensively throughout this tutorial. Poetry should manage these dependencies for you could also checkout the git repositories and look at the documentaion on readthedocs. -* **A Text Editor or IDE:** You will need a text editor or IDE (such as VS Code, Sublime Text, or Atom) for writing code. -* **Familiarity with the Command Line:** You will need to be comfortable using the command line or terminal. - ## References * **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ diff --git a/episodes/02-Copy-Template.md b/episodes/02-Copy-Template.md index 655da65851c37bcb2804805df4500f884d4e0226..a80924f9621a470a4bba5515d909c40ee0923b57 100755 --- a/episodes/02-Copy-Template.md +++ b/episodes/02-Copy-Template.md @@ -4,24 +4,56 @@ teaching: 10 exercises: 3 --- +::::::::::::::::::::::::::::::::::::::: objectives + +- Clone the NOVA template application using `copier`. +- Understand the basic project structure created by the template. +- Identify key files in the project (e.g., `pyproject.toml`). +- Install project dependencies using `poetry`. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- How do I quickly set up a starting point for a NOVA project? +- What files and directories are included in the NOVA template application? +- How does `poetry` manage project dependencies and virtual environments? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + # 2. Getting Started with a Template Application + As mentioned in the introduction, all code examples in this tutorial are based on a template application. In this episode, we will create this starting point by cloning a template using the `copier` library. This template provides a basic project structure and pre-configured files that will help us get started quickly with our NOVA project, saving us from setting up everything from scratch. -## Installing Copier +::::::::::::::::::::::::::::::::::::::::: callout +The setup section detailed the prerequisites required for the tutorial. One of those prerequisites is copier which will be used to clone a template application. If you\'ve not already insalled copier and other dependencies, please follow the instructions in the "Setup" section. -First, you will need to make sure that copier is installed. You can install it by running the following command (assuming you have pip installed): +:::::::::::::::::::::::::::::::::::::::::::::::::: -```bash -pip install copier -``` +## Install Project Dependencies + +1. **Clone the Template:** Follow the instructions in the "Getting Started with a Template Application" episode to clone the NOVA template using `copier`. This will create a new directory (e.g., `nova_tutorial`) containing your project files. +2. **Navigate to the Project Directory:** Open your terminal and navigate to the newly created project directory: + + ```bash + cd nova_tutorial + ``` + +3. **Install Dependencies with Poetry:** Use Poetry to install the project dependencies defined in the `pyproject.toml` file: + + ```bash + poetry install + ``` + + This command will create a virtual environment for your project and install all required libraries, including the NOVA libraries and Trame. ## Cloning the Template To clone the template application, run the following command: ```bash -copier copy https://code.ornl.gov/ndip/project-templates/python nova_tutorial +copier copy https://code.ornl.gov/ndip/project-templates/python.git nova_tutorial ``` This command will download the template to a directory called `nova_tutorial`. Copier will prompt you with a series of questions. Please answer the questions as follows: @@ -29,15 +61,31 @@ This command will download the template to a directory called `nova_tutorial`. C * **What is the name of your project?** > Enter `Nova Tutorial` + * **What is your python package name?** > Press enter to accept the default. -* **Do you want to install Mantid for your project?** +* **Do you want to install Mantid for your project?** + > Enter `no` -* **Publish to pypi?** +* ** Are you developing a GUI application using MVVM pattern?** + + > Enter `yes` + +* ** Which library will you use?** + + > Select `Trame` + +* **Do you want a template with multiple tabs? + + > Enter `yes` + +* **Publish to pypi?** + > Enter `no` + * **Publish documentation to readthedocs.io?** > Enter `no` @@ -51,18 +99,69 @@ The template creates a basic project structure to help get you started quickly. * `nova_tutorial/`: The root directory of your project * `nova_tutorial/src/`: Contains your application code * `nova_tutorial/src/nova_tutorial/`: The name of your python package -* `nova_tutorial/tests/`: Contains your application's unit tests. +* `nova_tutorial/tests/`: Contains your application\'s unit tests. * `nova_tutorial/README.md`: A readme file. -**Note:** The code provided in the `code/episode_2` directory represents a simplified version of the template output, focused on the essential files for this tutorial. The full template, as generated by `copier`, includes additional configuration files (like Dockerfiles and CI setup) that are not strictly necessary for following the tutorial's core concepts. +**Note:** The code provided in the `code/episode_2` directory represents a simplified version of the template output, focused on the essential files for this tutorial. The full template, as generated by `copier`, includes additional configuration files (like Dockerfiles and CI setup) that are not strictly necessary for following the tutorial\'s core concepts. In the following sections, we will start adding code to this structure to build our NDIP job submission tool. -## Exercises +::::::::::::::::::::::::::::::::::::::: challenge + +## **Run the Initial Tests** + +The template comes with a basic test suite using `pytest`. Navigate to the `nova_tutorial` directory in your terminal and run the tests using the command `pytest`. Examine the output. Where are the tests located? What does a successful test look like? Modify the test to intentionally fail. Observe the error message. Remember to revert the changes so that the tests pass again.. + +::::::::::::::: solution + + * **Where are the tests located?** The tests are typically located in the `tests/` directory, often mirroring the structure of the `src/` directory (e.g., `tests/nova_tutorial/test_module.py`). + * **What does a successful test look like?** A successful test will usually result in output from `pytest` that indicates all tests have passed (e.g., "100% passed"). There will be no error messages. The exact output varies slightly depending on the number of tests and the pytest configuration. + * **Modify the test to intentionally fail:** To make a test fail, you can change an assertion to be incorrect. For example, if a test asserts that `1 + 1 == 2`, change it to `1 + 1 == 3`. + * **Observe the error message:** The error message will indicate which assertion failed and provide information about the expected and actual values. For example, you might see something like: `AssertionError: assert 2 == 3`. +::::::::::::::::::::::::: +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge + +## **Explore Pre-Commit Hooks** + +The template includes pre-commit hooks for code formatting and linting. + * **Inspect the Configuration:** Open the `.pre-commit-config.yaml` file. What tools are configured to run? What does each tool do (e.g., `black`, `flake8`)? + * **Try It Out:** Make a deliberate formatting error in one of the Python files (e.g., add extra spaces, make a line too long). Now, run `pre-commit run`. Observe how the pre-commit hooks automatically fix the formatting issues. Commit your changes. Pre-commit hooks can also be automatically run upon git commit. + +::::::::::::::: solution + + * **What tools are configured to run?** Open `.pre-commit-config.yaml` to see the list. Common tools include: + * `black`: Auto-formats Python code to adhere to a consistent style. + * `flake8`: Lints Python code, checking for style errors and potential bugs. + * `isort`: Sorts Python imports alphabetically and separates them into sections. + * `end-of-file-fixer`: Ensures that files end with a newline. + * `trailing-whitespace-fixer`: Removes trailing whitespace from lines. + * **Observe how the pre-commit hooks automatically fix the formatting issues:** When you run `pre-commit run`, the configured tools will automatically modify the files to correct formatting errors. The output will show which tools were run and which files were modified. You\'ll need to `git add` the modified files before committing. + +::::::::::::::::::::::::: +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge + +## **CI/CD Setup with GitLab CI** + +The template includes a basic GitLab CI configuration file (`.gitlab-ci.yml`). While we won\'t fully execute a CI/CD pipeline in this tutorial step, let\'s understand its purpose. + * **Examine the Configuration:** Open the `.gitlab-ci.yml` file. This file defines the *pipeline*. What are the key stages defined in the pipeline (e.g., build, test, deploy)? Identify the jobs that install dependencies, run tests, and perform linting. What triggers the pipeline to run (e.g., pushes, merge requests)? + * **GitLab Runner:** GitLab CI/CD uses *runners* to execute the jobs defined in your `.gitlab-ci.yml` file. These runners can be configured in various ways. (No action required; this is just an informational point.) + * **Discussion:** If you were to push this project to a GitLab repository, what would happen when you create a merge request? How could you use CI/CD to automatically verify the code quality of your project? (No action required; this is a thought exercise.) -1. **List Project Files:** Use the command line to navigate into the `nova_tutorial` directory and list all the files and folders created by the template. -2. **Explore `pyproject.toml`:** Open the `pyproject.toml` file in your text editor. Identify the sections that define project dependencies and project scripts. -3. **Install Dependencies:** If you haven't already, run `poetry install` in the `nova_tutorial` directory. Explain in your own words what this command does in terms of dependency management and virtual environments. +::::::::::::::: solution + * **What are the key stages defined in the pipeline?** The stages typically include: + * `build`: Installs dependencies and prepares the application for testing. + * `test`: Runs the unit tests. + * `lint`: Performs code linting and formatting checks. + * `deploy` (optional): Deploys the application to a server or environment. + * **Identify the jobs that install dependencies, run tests, and perform linting:** Look for job definitions that use commands like `pip install`, `pytest`, and `flake8` (or similar linting tools). + * **What triggers the pipeline to run?** The pipeline is typically triggered by pushes to the repository and the creation of merge requests. This is defined in the `.gitlab-ci.yml` file using keywords like `on: [push, merge_requests]`. + * **If you were to push this project to a GitLab repository, what would happen when you create a merge request?** A pipeline would be automatically triggered. The pipeline would run the jobs defined in `.gitlab-ci.yml`, such as installing dependencies, running tests, and performing linting. The results of the pipeline would be displayed in the merge request, allowing you to see if the code passes all checks before merging it. This helps ensure code quality and prevents broken code from being merged into the main branch. +::::::::::::::::::::::::: +:::::::::::::::::::::::::::::::::::::::::::::::::: ## References diff --git a/episodes/03-Nova-Galaxy.md b/episodes/03-Nova-Galaxy.md index fa419505d16b34870afc98e562fc6682ec61b812..1fe8c74a35dcd893cd830ea5aaa15c5b73ec4ab8 100755 --- a/episodes/03-Nova-Galaxy.md +++ b/episodes/03-Nova-Galaxy.md @@ -1,13 +1,32 @@ --- -title: "Using NDIP for Backend Computations" +title: "Invoking an NDIP tool" teaching: 10 exercises: 3 --- +::::::::::::::::::::::::::::::::::::::: objectives + +- Explain the purpose of the `Nova`, `Tool`, and `Parameters` classes in `nova-galaxy`. +- Describe the basic workflow for running an NDIP tool using `nova-galaxy`. +- Connect to NDIP using the `Nova` class. +- Define an NDIP tool and set its parameters using the `Tool` and `Parameters` classes. +- Run the tool and create a datastore. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- How can I interact with the NDIP platform programmatically from Python? +- What is the `nova-galaxy` library, and how does it simplify NDIP operations? +- How do I define an NDIP tool and specify its input parameters using `nova-galaxy`? +- Where can I find information about what NDIP tool to use and parameters to set? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + # Using NDIP for Backend Computations In this section, we will start using the `nova-galaxy` library to interact with the NDIP platform and run a neutron analysis tool. First, ensure you have set your `GALAXY_URL` and `GALAXY_API_KEY` as environment variables, as explained in the notes at the end of this episode. We also need to add `nova-galaxy` as a project dependency. -Open the `pyproject.toml` file in your project and add `nova-galaxy = "^0.4.0"` under `[tool.poetry.dependencies]`. Then, run `poetry install` to update your project dependencies. +From the command line, type `poetry add nova-galaxy@^0.4.0`. This command will add the nova-galaxy library to the pyproject.toml file as a project dependency. Then run `poetry install` to update your project dependencies. ## Interacting with NDIP via `nova-galaxy` @@ -24,11 +43,11 @@ The basic workflow for running a tool with `nova-galaxy` involves these steps: 1. **Connect to NDIP**: Create a `Nova` instance with your credentials. 2. **Define the Tool**: Create a `Tool` instance, specifying the ID of the NDIP tool you want to run. 3. **Set Parameters**: Create a `Parameters` instance and add the necessary input parameters and their values for the tool. -4. **Run the Tool**: Use the `tool.run()` method to submit the job to NDIP. This typically involves creating a datastore to hold the job's input and output data. +4. **Run the Tool**: Use the `tool.run()` method to submit the job to NDIP. This typically involves creating a datastore to hold the job\'s input and output data. -## Creating a Model of a Tool +## Running the Fractal tool -Let's create a `Fractal` class that uses `nova-galaxy` to run the `neutrons_fractal` tool on NDIP. You can find the complete code for this episode in the `code/episode_3` directory. Here, we will focus on the key code snippets and explain the important parts. +Let\'s create a `Fractal` class that uses `nova-galaxy` to run the `neutrons_fractal` tool on NDIP. You can find the complete code for this episode in the `code/episode_3` directory. Here, we will focus on the key code snippets and explain the important parts. **1. `Fractal` Class (`src/nova_tutorial/models/fractal.py`):** @@ -48,7 +67,7 @@ Let's create a `Fractal` class that uses `nova-galaxy` to run the `neutrons_frac self.galaxy_key = os.getenv("GALAXY_API_KEY") ``` -* **`run_fractal_tool` method**: This method encapsulates the logic for running the `fractal` tool. Let's examine the key steps within this method: +* **`run_fractal_tool` method**: This method encapsulates the logic for running the `fractal` tool. Let\'s examine the key steps within this method: * **Instantiate `Nova`, `Tool`, and `Parameters`**: We create instances of the `Nova`, `Tool`, and `Parameters` classes: ```python @@ -58,7 +77,7 @@ Let's create a `Fractal` class that uses `nova-galaxy` to run the `neutrons_frac params.add_input(name="fractal_type", value=self.fractal_type) ``` - Note that we create a `Tool` object with the `id="neutrons_fractal"`. This tells `nova-galaxy` which NDIP tool we want to run. The obvious question at this point is how do we know the id of the tool and what parameters it expects? We can look at the tool's launch page in calvera for some hints but ultimately we have to look at the tool's [xml file](https://code.ornl.gov/ndip/galaxy-tools/-/blob/dev/tools/neutrons/test_tools/fractal.xml?ref_type=heads). + Note that we create a `Tool` object with the `id="neutrons_fractal"`. This tells `nova-galaxy` which NDIP tool we want to run. The obvious question at this point is how do we know the id of the tool and what parameters it expects? We can look at the tool\'s launch page in calvera for some hints but ultimately we have to look at the tool\'s [xml file](https://code.ornl.gov/ndip/galaxy-tools/-/blob/dev/tools/neutrons/test_tools/fractal.xml?ref_type=heads). * **Connect and Run the Tool**: The `with nova.connect() as galaxy_connection:` block establishes a connection to NDIP and ensures proper handling of the connection: ```python @@ -92,15 +111,45 @@ poetry run app You should see `Fractal tool finished successfully.` printed to the console. +::::::::::::::::::::::::::::::::::::::::: callout +By default, trame will open a new tab in the browser and bring it to focus. If this is undesired behavior, it can be prevented by using ```poetry run app --server```. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +## Asynchronous tool execution + +At times, it may be desirable to execute a tool or workflow without waiting on the result. The class Tool method run has an optional `wait` parameter. The default is true so that the tool is run in a blocking manner. However, by setting the parameter to false, the tool will be run asynchronously in a non-blocking manner. + +``` + output = tool.run(data_store, params, wait=False) +``` + +## Tool output + +After the tool finishes running on NDIP, the result of the tool is returned as an output. In this example, the output is a single image file of the generated fractal. Tools can return single files or a collection of files as a zip. The output can be used by the rest of your application, saved, or simply discarded. A copy of the output also resides on the NDIP platform, so it is not necessary to maintain a local copy. + ## Next Steps In this section, you learned how to use the `nova-galaxy` library to run a tool on NDIP. In the next sections, we will expand on this to create a full user interface to make this functionality accessible to the end user. -## Exercises +::::::::::::::::::::::::::::::::::::::: challenge +**Run with Different Fractal Types** +Modify the `FractalViewModel` class to default to a different fractal type (e.g., "julia"). Run the application again and verify that it still works. + +::::::::::::::: solution +The simplest way to accomplish this is to change the default for fractal type in the Fractal class. You can easily observe the change in galaxy. +::::::::::::::::::::::::: +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge +**Introduce an Error** +Introduce an error into the code by changing the tool id to something different. What ouput do you see? What if you change the fractal_type to an invalid option such as mandel instead of mandelbrot? + +::::::::::::::: solution +In both cases, an error is received from the ndip-galaxy library. When changing the tool id, a `Tool not found` error will be returned. When selecting an invalid parameter, a `parameter 'option': an invalid option was selected` error will be returned. +::::::::::::::::::::::::: +:::::::::::::::::::::::::::::::::::::::::::::::::: -1. **Run with Different Fractal Types:** Modify the `FractalViewModel` class to default to a different fractal type (e.g., "julia"). Run the application again and verify that it still works. -2. **Introduce an Error:** Comment out the line `params.add_input(name="fractal_type", value=self.fractal_type)` in the `run_fractal_tool` method. Run the application. What output do you see? Why do you think this error occurred? (Hint: Consider what input the `neutrons_fractal` tool expects.) -3. **Explore `nova-galaxy` Documentation:** Open the `nova-galaxy` library source code that was provided earlier. Look at the `Nova` class and the `Tool` class. Identify at least two other methods available in these classes and briefly describe what they do based on their names and docstrings. ## References diff --git a/episodes/04-MVVM-Deisgn-Pattern.md b/episodes/04-MVVM-Deisgn-Pattern.md index 2a858537890552d41f7447ce688220997c43b5a7..8185956e109a78784cb83d21f7211576ff895722 100755 --- a/episodes/04-MVVM-Deisgn-Pattern.md +++ b/episodes/04-MVVM-Deisgn-Pattern.md @@ -4,37 +4,92 @@ teaching: 10 exercises: 0 --- +::::::::::::::::::::::::::::::::::::::: objectives + +- Define the Model-View-ViewModel (MVVM) design pattern and its benefits. +- Explain the responsibilities of each component in the MVVM pattern (Model, View, ViewModel). +- Describe the role of data binding in MVVM and how it enables reactive UIs. +- Explain the purpose of the `nova-mvvm` library and its key components (`BindingInterface`, `TrameBinding`, `Communicator`, `new_bind`). +- Introduce Pydantic for data modeling and validation within the MVVM pattern. +- Understand how to implement MVVM using `nova-mvvm` and Pydantic in a NOVA application. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- What is the Model-View-ViewModel (MVVM) design pattern, and why is it useful for UI development? +- What are the roles and responsibilities of the Model, View, and ViewModel in the MVVM pattern? +- How does data binding work in MVVM, and why is it important? +- How does the `nova-mvvm` library simplify the implementation of the MVVM pattern in NOVA applications? +- What is Pydantic, and how can it be used for data modeling and validation in the context of MVVM? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + # 4. User Interface Best Practices: The MVVM Design Pattern -In this section, we will introduce the Model-View-ViewModel (MVVM) design pattern, and explore how to implement it using the `nova-mvvm` library. We will also introduce Pydantic for data validation and model definition. +In this section, we will introduce the Model-View-ViewModel (MVVM) design pattern, a powerful architectural approach for structuring applications, particularly those with user interfaces. We\'ll explore the core principles of MVVM, the roles of each component, and how the NOVA framework simplifies its implementation, making your code more organized, testable, and maintainable. + +## What is a Design Pattern? + +Before diving into MVVM, it\'s helpful to understand what a *design pattern* is in software development. A design pattern is a reusable solution to a commonly occurring problem in software design. It\'s not a code snippet you can copy and paste, but rather a template or blueprint for how to structure your code to achieve a specific goal (e.g., separation of concerns, code reusability, testability). + +## The Model-View-ViewModel (MVVM) Pattern + +MVVM is an architectural design pattern specifically designed for applications with user interfaces (UIs). It aims to separate the UI (the View) from the underlying data and logic (the Model) by introducing an intermediary component called the ViewModel. This separation makes the application more maintainable, testable, and easier to evolve. + +![](fig/mvvm.png) + +The MVVM pattern consists of three core components: +* **Model:** The Model represents the *data* and the *business logic* of the application. It\'s responsible for: + * Data storage (e.g., reading from and writing to a database, a file, or an API). + * Data validation (ensuring the data is in a valid state). + * Business rules (the logic that governs how the data is manipulated and used). -## Introduction to MVVM +The Model is *agnostic* to the UI. It doesn\'t know anything about how the data will be displayed or how the user will interact with it. It simply provides the data and the means to manipulate it. -The Model-View-ViewModel (MVVM) pattern is an architectural pattern used to structure applications, particularly those with user interfaces. It promotes a separation of concerns, making code more organized, testable, and maintainable. + *In the context of our NOVA tutorial, the Model will often include the logic for interacting with the NDIP platform via `nova-galaxy`.* -* **Model:** The Model represents the application's data and business logic. It is responsible for retrieving, managing, and modifying data. It is not directly concerned with how the data is displayed. -* **View:** The View is the user interface (UI) that the user interacts with. It displays data to the user and captures user interactions. In this section, we will not be using a UI but when we do, this will be where UI components will be placed. -* **ViewModel:** The ViewModel acts as an intermediary between the Model and the View. It exposes the data from the Model in a way that is easy for the View to display. It also handles user interactions, and updates the Model accordingly. +* **View:** The View is the *user interface* (UI) of the application. It\'s responsible for: + * Displaying data to the user. + * Capturing user input (e.g., button clicks, text entered in a field, selections from a dropdown). + * Presenting the application\'s visual appearance. -The benefits of using the MVVM pattern include: + The View is *passive*. It doesn\'t contain any business logic or data manipulation code. It simply displays the data provided to it and relays user actions to the ViewModel. -* **Testability:** ViewModels can be unit tested independently of the View, which allows for more complete and thorough testing. -* **Maintainability:** The clear separation of concerns makes it easier to maintain and refactor code. Changes to the Model are less likely to cause breaking changes in the View or ViewModel. -* **Code Reusability:** The View and the ViewModel can be reused in different parts of the application. For example, different Views can be implemented without modifying the underlying ViewModel. -* **Flexibility:** Provides a flexible and scalable architecture that can be adapted to different application requirements. + *In our NOVA tutorial, the View will be built using Trame and Vuetify components, leveraging the styling and structure provided by `nova-trame`.* -There are other patterns that can be used to build UIs such as MVC or MVP. We will not explore these in this tutorial, but it is important to know that other options exist. +* **ViewModel:** The ViewModel acts as an *intermediary* between the Model and the View. It\'s responsible for: + * Preparing data from the Model for display in the View. This might involve formatting the data, combining data from multiple sources, or creating derived data. + * Handling user actions from the View. This might involve validating user input, updating the Model, or triggering other actions in the application. + * Exposing data and commands to the View through *data binding*. -## Core Concepts of `nova-mvvm` + The ViewModel knows about the View and the data that the View needs, but it doesn\'t know about the specific UI elements that are used to display the data. It also orchestrates the interaction between the View and the Model. -The `nova-mvvm` library provides a set of tools that make it easier to implement the MVVM pattern. Here are the key concepts: + *The ViewModel is where we\'ll use `nova-mvvm` to create bindings between the ViewModel and the View, enabling the reactive updates.* -* **`BindingInterface`**: This is an abstract class that defines the interface for creating bindings between a ViewModel/Model variable and a framework specific element. It provides the `new_bind` method, which returns a `Communicator` object. -* **`TrameBinding`**: This is an implementation of the `BindingInterface` specifically for use with Trame. It creates `TrameCommunicator` objects. -* **`Communicator`**: This is a class that is responsible for managing the communication between the ViewModel/Model and the View. For example, `TrameCommunicator` is a `Communicator` used in Trame. The `Communicator` contains a `connect` method, which establishes the connection between a GUI element and a linked object and will return a callback that the UI can use to trigger model updates. It also contains an `update_in_view` method which will update the UI with new state changes. -* **`new_bind`**: This method returns an object that contains a `connect` method, and an `update_in_view` method. - * The connect method establishes the connection between a GUI element and a linked object and will return a callback that the UI can use to trigger model updates. - * The update_in_view will update the UI with new state changes. +## Why Use MVVM? (Benefits) + +The MVVM pattern provides several benefits: + +* **Separation of Concerns:** MVVM clearly separates the UI (View) from the application logic (Model) and the presentation logic (ViewModel). This makes the code more organized and easier to understand. +* **Testability:** Because the ViewModel is independent of the View, it can be easily unit-tested. You can test the presentation logic without needing to create a UI. +* **Maintainability:** Changes to the UI are less likely to affect the underlying application logic, and vice versa. This makes the application easier to maintain and evolve over time. +* **Reusability:** The ViewModel can be reused with different Views, allowing you to create different UIs for the same underlying data and logic. +* **Team Collaboration:** MVVM facilitates collaboration between developers and UI designers. Developers can focus on the Model and ViewModel, while designers can focus on the View, without interfering with each other\'s work. + +## Data Binding: The Heart of MVVM + +*Data binding* is a mechanism that allows the View and the ViewModel to automatically synchronize their data. When the data in the ViewModel changes, the View is automatically updated to reflect the changes. Conversely, when the user interacts with the View (e.g., by entering text in a field), the data in the ViewModel is automatically updated. + +This data binding is what makes MVVM so powerful and allows for reactive UIs. Instead of manually writing code to update the UI every time the data changes, you simply bind the UI elements to the data in the ViewModel, and the updates happen automatically. + +## How NOVA Simplifies MVVM + +The NOVA framework provides libraries and tools that simplify the implementation of the MVVM pattern: + +* **`nova-mvvm`**: This library provides a set of classes and functions that make it easier to create bindings between the ViewModel and the View. It handles the low-level details of data synchronization, allowing you to focus on the application logic. +* **`nova-trame`**: Provides a set of pre-built components and layouts that are designed to work seamlessly with `nova-mvvm`. This simplifies the creation of the View and ensures a consistent look and feel across NOVA applications. +* **Pydantic:** While not strictly part of the MVVM pattern, Pydantic helps define the structure of your Model and ViewModel, making it easier to validate data and ensure data integrity. ## Introduction to Pydantic for Data Modeling @@ -49,7 +104,7 @@ Benefits of Pydantic: ## Implementing MVVM with `nova-mvvm` and Pydantic - Key Code Snippets -Let's see how to implement the MVVM pattern using `nova-mvvm` and incorporate Pydantic for data validation in our `FractalViewModel`. You can find the complete code for this episode in the `code/episode_4` directory. Here, we will focus on the key code snippets and explain the important parts. +Let\'s see how to implement the MVVM pattern using `nova-mvvm` and incorporate Pydantic for data validation in our `FractalViewModel`. You can find the complete code for this episode in the `code/episode_4` directory. Here, we will focus on the key code snippets and explain the important parts. **1. `FractalToolInput` Pydantic Model (`src/nova_tutorial/view_models/fractal_view_model.py`):** @@ -62,7 +117,7 @@ Let's see how to implement the MVVM pattern using `nova-mvvm` and incorporate Py class FractalToolInput(BaseModel): fractal_type: Literal["mandelbrot", "julia", "random", "markus"] ``` - By defining `fractal_type` with `Literal[...]`, we ensure that only the specified string values are accepted, leveraging Pydantic's data validation capabilities. + By defining `fractal_type` with `Literal[...]`, we ensure that only the specified string values are accepted, leveraging Pydantic\'s data validation capabilities. **2. `FractalViewModel` Class (`src/nova_tutorial/view_models/fractal_view_model.py`):** @@ -113,9 +168,9 @@ Let's see how to implement the MVVM pattern using `nova-mvvm` and incorporate Py self._fractal_type = fractal_type self.fractal_type_bind.update_in_view(self._fractal_type) # Update fractal_type state ``` - Here, `FractalToolInput(fractal_type=fractal_type)` attempts to create an instance of the Pydantic model, which triggers validation. If `fractal_type` is invalid, a `ValidationError` is caught, and the error message is set in the ViewModel's `_message` state, which, thanks to binding, *will later* update the UI. + Here, `FractalToolInput(fractal_type=fractal_type)` attempts to create an instance of the Pydantic model, which triggers validation. If `fractal_type` is invalid, a `ValidationError` is caught, and the error message is set in the ViewModel\'s `_message` state, which, thanks to binding, *will later* update the UI. -* **`run_fractal_tool` method**: In `run_fractal_tool`, we now also use the `message_bind` and `run_button_disabled_bind` to update the UI state (even though we don't have a UI yet, this demonstrates good MVVM practice): +* **`run_fractal_tool` method**: In `run_fractal_tool`, we now also use the `message_bind` and `run_button_disabled_bind` to update the UI state (even though we don\'t have a UI yet, this demonstrates good MVVM practice): ```python def run_fractal_tool(self): @@ -129,7 +184,7 @@ Let's see how to implement the MVVM pattern using `nova-mvvm` and incorporate Py raise e self._job_status["fractal"] = "Completed" ``` - Even without a View, we are already considering what the functionality that we'll need to support. We've already created the bindings to server as our communicators between our future view and our new view model. + Even without a View, we are already considering what the functionality that we\'ll need to support. We\'ve already created the bindings to server as our communicators between our future view and our new view model. **2. `main.py` - Wiring up TrameBinding (`src/nova_tutorial/main.py`):** @@ -160,9 +215,8 @@ poetry run app You should see `Fractal tool finished successfully.` printed to the console, although we have not created a UI yet. -## Exercises - -1. **Trigger Pydantic Validation Error (Programmatic):** +::::::::::::::::::::::::::::::::::::::: challenge +**Trigger Pydantic Validation Error (Programmatic)** * In `FractalViewModel` in `src/nova_tutorial/view_models/fractal_view_model.py`, modify the `update_fractal_programmatically` function from the previous exercise to use an *invalid* fractal type: ```python def update_fractal_programmatically(new_type: str): @@ -178,12 +232,18 @@ You should see `Fractal tool finished successfully.` printed to the console, alt * The "Current fractal type (after attempt):" is still "mandelbrot" indicating the invalid update was rejected. * The "Current message:" now contains a "Validation Error" message from Pydantic. -2. **Inspect ViewModel State:** +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge +**Inspect ViewModel State** * In `src/nova_tutorial/view_models/fractal_view_model.py`, add `print` statements within the `FractalViewModel.__init__` method to print the initial values of `self._fractal_type`, `self._job_status`, and `self._message`. * Run the application (`poetry run app`). Observe the output in the console. Verify that the initial values are printed as expected. * Now, modify the `FractalViewModel.__init__` method to change the initial value of `self._message` to "Application starting...". Run the application again and confirm that the printed initial message has changed. -3. **Programmatic State Update and Binding:** +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge +**Programmatic State Update and Binding:** * In `FractalViewModel` in `src/nova_tutorial/view_models/fractal_view_model.py`, after the line `self.fractal_type_bind = binding.new_bind(...)` in `__init__`, add the following lines: ```python print("Initial fractal type:", self._fractal_type) # Print initial value @@ -200,6 +260,8 @@ You should see `Fractal tool finished successfully.` printed to the console, alt * The message "Fractal type updated programmatically to: julia" is printed. * The final fractal type (after programmatic update) is printed as "julia". +:::::::::::::::::::::::::::::::::::::::::::::::::: + ## References * **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ diff --git a/episodes/05-Working-with-Trame.md b/episodes/05-Working-with-Trame.md index 19583e501b229291c4443d1c738c3418f21bdd0a..474077c44496ee54787f93535ddb67d3913931f7 100755 --- a/episodes/05-Working-with-Trame.md +++ b/episodes/05-Working-with-Trame.md @@ -1,211 +1,214 @@ --- -title: "Web-based User Interface Development" -teaching: 10 +title: "Web-based User Interface Development with Trame" +teaching: 20 exercises: 3 --- -# Web-based User Interface Development -In this section, we will introduce Trame and the `nova-trame` library to start building a web-based user interface for our NOVA application. We'll cover the benefits of Trame and how `nova-trame` simplifies UI development within the NOVA ecosystem. +::::::::::::::::::::::::::::::::::::::: objectives + +- Explain the purpose of Trame as a UI framework. +- Describe how `nova-trame` simplifies Trame development in NOVA applications. +- Identify key features and benefits of using Trame. +- Use `nova-trame` components to build a basic user interface. +- Incorporate common Vuetify components into a Trame application. +- Explore the Vuetify component library and identify components suitable for scientific applications. +- Add custom UI components, and tailor their appearance with attributes. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- What is Trame, and why should I use it for building UIs in NOVA? +- How does `nova-trame` make Trame development easier? +- What are the key advantages of using a declarative UI approach with Trame? +- How can I create a basic UI layout using `nova-trame` components? +- How can I add common Vuetify components (e.g., `VTextField`, `VCheckbox`, `VSlider`) to my Trame application? +- How can I customize the appearance of Vuetify components? +- Where can I find more information about available Vuetify components? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +# 5. Web-based User Interface Development with Trame + +In this section, we will dive into Trame and the `nova-trame` library to build interactive web-based user interfaces for our NOVA applications. We\'ll explore how `nova-trame` simplifies UI development within the NOVA ecosystem and how to use common layout components. ## Introduction to Trame -Trame is a powerful Python framework for building interactive web-based user interfaces and visualizations, all without needing to write Javascript or complex web code directly. It allows you to describe your UI declaratively using Python, and Trame handles the complexities of creating a dynamic web application. +Trame is a powerful Python framework for building interactive web applications and visualizations. It lets you create UIs declaratively using Python, eliminating the need for complex JavaScript and front-end web development. Trame handles the complexities of creating a dynamic web application, allowing you to focus on your application\'s logic. Key Features and Benefits of Trame: -* **Declarative UI:** Describe your user interfaces using Python code, focusing on *what* the UI should be, not *how* to implement it in web technologies. -* **Interactive Applications:** Create dynamic UIs with real-time updates through Trame's data binding. Changes in your ViewModel automatically reflect in the UI, and user interactions in the UI can update the ViewModel. -* **Web-Based and Accessible:** Trame applications are standard web applications, accessible from any modern web browser, making them easy to deploy and share. -* **Extensible and Rich UI Components:** Trame leverages libraries like Vuetify, providing a wide range of pre-built, visually appealing, and interactive UI components. -* **Python-Centric Development:** Because Trame is Python-based, you can build complex web applications and perform computations using Python, without needing extensive front-end web development knowledge. +* **Declarative UI:** Define your user interfaces using Python code. You describe *what* the UI should be, not *how* to implement it using web technologies. This significantly simplifies UI development. +* **Interactive Applications:** Create dynamic UIs with real-time updates using Trame\'s data binding capabilities. Changes in your ViewModel automatically reflect in the UI, and user interactions in the UI can update the ViewModel. +* **Web-Based and Accessible:** Trame applications are standard web applications, accessible from any modern web browser. This makes them easy to deploy and share with colleagues and users. +* **Extensible and Rich UI Components:** Trame leverages libraries like Vuetify, providing a wide range of pre-built, visually appealing, and interactive UI components. Vuetify follows the Material Design specification, ensuring a modern and consistent look and feel. +* **Python-Centric Development:** Build complex web applications and perform computations using Python, without needing extensive front-end web development knowledge. This allows you to leverage your existing Python skills. ## Introducing `nova-trame` -`nova-trame` simplifies the process of creating consistent and easy-to-use Trame applications. It builds upon the core Trame framework by providing a set of pre-built components, layouts, themes, and utilities that are tailored to the needs of the NOVA ecosystem. +`nova-trame` simplifies the process of creating consistent and easy-to-use Trame applications within the NOVA framework. It builds upon the core Trame framework by providing pre-built components, layouts, themes, and utilities tailored for the NOVA ecosystem. Benefits of using `nova-trame`: -* **Simplified UI Development:** Reduces the amount of boilerplate code required to create a Trame application. -* **Consistent Look and Feel:** Ensures all NOVA applications have a consistent look and feel by applying a common theme and style. -* **Reusable UI Components:** Makes it easy to use reusable UI components within your application. -* **Integration with MVVM:** `nova-trame` works seamlessly with the `nova-mvvm` library to implement the MVVM architecture. +* **Simplified UI Development:** Reduces the boilerplate code required to create a Trame application. `nova-trame` provides abstractions and helpers that streamline common UI tasks. +* **Consistent Look and Feel:** Ensures all NOVA applications have a consistent look and feel by applying a common theme and style based on the NOVA design guidelines. This helps users easily recognize and use NOVA applications. +* **Reusable UI Components:** Makes it easy to use reusable UI components within your application. You can create custom components and share them across multiple NOVA applications. +* **Integration with MVVM:** `nova-trame` works seamlessly with the `nova-mvvm` library to implement the MVVM architecture. This simplifies the process of connecting your UI to your application logic. + +## Key `nova-trame` Components + +`nova-trame` provides several key components that simplify UI development. Here are some of the most important: + +* **`InputField`:** This component simplifies the creation of various input fields (text fields, dropdowns, checkboxes, etc.). It automatically integrates with Pydantic models to load labels, hints, and validation rules, reducing the amount of code you need to write. It also supports debouncing and throttling for improved performance. +* **Layout Components:** `nova-trame` provides layout components that help you structure your UI. These components are based on CSS Flexbox and Grid layouts, making it easy to create responsive and visually appealing UIs. The main layout components include: + * **`GridLayout`:** Creates a grid with a specified number of columns. You can use `GridLayout` to arrange your UI elements in a structured grid layout. + * **`VBoxLayout`:** Creates an element that vertically stacks its children. Use `VBoxLayout` to arrange UI elements in a vertical column. + * **`HBoxLayout`:** Creates an element that horizontally stacks its children. Use `HBoxLayout` to arrange UI elements in a horizontal row. + +Let\'s explore these components in more detail: -## Creating the UI - Key Code Snippets +### `InputField` -Let's create a basic user interface for our fractal tool using `nova-trame` and Vuetify components. You can find the complete code for this episode in the `code/episode_5` directory. Here, we will examine the key code snippets in `fractal_view.py` and `main.py`. +The `InputField` component simplifies creating different types of input fields in your UI. It can create text fields, dropdowns (select), checkboxes, and more, all with a consistent look and feel. A key advantage of `InputField` is its automatic integration with Pydantic models. If the `v_model` references a Pydantic model field, `InputField` can automatically: -**1. `FractalApp` View Class (`src/nova_tutorial/views/fractal_view.py`):** +* **Load the label:** Use the `title` attribute from the Pydantic field as the input field\'s label. +* **Display a hint:** Use the `description` attribute from the Pydantic field as a help text or hint for the input field. +* **Apply validation rules:** Automatically generate validation rules based on the Pydantic field\'s type and constraints. -* **Imports**: The `FractalApp` view starts by importing necessary classes from `nova-trame`, `trame`, and our `nova_tutorial` modules: +This integration significantly reduces the amount of boilerplate code you need to write for input fields. + +The `InputField` also provides debouncing and throttling features that can improve application performance. These features are useful when dealing with user input that triggers frequent updates to the Trame state. + +### Layout Components: `GridLayout`, `VBoxLayout`, and `HBoxLayout` + +`nova-trame` provides several layout components that make it easy to structure your UI: + +* **`GridLayout`:** Creates a grid layout with a specified number of columns. This is useful for arranging UI elements in a structured grid. You can use the `row_span` and `column_span` attributes to control how many rows and columns each element spans. ```python - # src/nova_tutorial/views/fractal_view.py - from nova.mvvm.trame_binding import TrameBinding - from nova.trame import ThemedApp from nova.trame.view import layouts - from trame.app import get_server from trame.widgets import vuetify3 as vuetify - from nova_tutorial.view_models.fractal_view_model import FractalViewModel + with layouts.GridLayout(columns=2): + vuetify.VTextField(label="First Name") + vuetify.VTextField(label="Last Name") + vuetify.VTextField(label="Email") + vuetify.VTextField(label="Phone Number") ``` - Notice the imports from `nova.trame` (like `ThemedApp`, `layouts`), `trame.app`, `trame.widgets.vuetify3`, and our existing `FractalViewModel` and `TrameBinding`. -* **`FractalApp` Class Definition**: We define `FractalApp` as a class that inherits from `ThemedApp`. `ThemedApp` from `nova-trame` provides a base class with a consistent NOVA theme for Trame applications: + This code creates a grid with two columns and arranges the text fields in the grid. + +* **`VBoxLayout`:** Creates a vertical box layout, stacking its children vertically. This is useful for creating simple vertical layouts. ```python - class FractalApp(ThemedApp): # Inherits from nova.trame.ThemedApp for consistent styling - def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - self.fractal_vm = FractalViewModel(TrameBinding(self.server.state)) - self.create_ui() + from nova.trame.view import layouts + from trame.widgets import vuetify3 as vuetify + + with layouts.VBoxLayout(): + vuetify.VTextField(label="Address Line 1") + vuetify.VTextField(label="Address Line 2") + vuetify.VTextField(label="City") ``` - In the `__init__` method: - * `super().__init__()` calls the `ThemedApp` constructor. - * `self.server = get_server(...)` initializes the Trame server. - * `self.fractal_vm = FractalViewModel(TrameBinding(self.server.state))` instantiates our `FractalViewModel`, crucially passing it a `TrameBinding` instance. This is what connects the ViewModel to the Trame UI. - * `self.create_ui()` calls the method that defines the user interface layout. -* **`create_ui` method**: This method defines the structure and components of our UI using Vuetify widgets within Trame layouts: + This code creates a vertical layout and stacks the text fields vertically. + +* **`HBoxLayout`:** Creates a horizontal box layout, stacking its children horizontally. This is useful for creating simple horizontal layouts. ```python - def create_ui(self) -> None: - self.state.trame__title = "NOVA Tutorial" # Set window title - with super().create_ui() as layout: # Use themed layout - with layout.content: # Main content area - with layouts.VBoxLayout(classes="ma-2"): # Vertical layout with margin - with vuetify.VCard(classes="pa-2"): # Card container with padding - with vuetify.VRadioGroup( # Radio button group for fractal type - v_model=("fractal_vm.fractal_type", "mandelbrot"), # Two-way binding to ViewModel - classes="mb-2", # Margin bottom - ): - vuetify.VRadio(label="Mandelbrot", value="mandelbrot") # Radio options - vuetify.VRadio(label="Julia", value="julia") - vuetify.VRadio(label="Random", value="random") - vuetify.VRadio(label="Markus", value="markus") - vuetify.VBtn( # Button to run the tool - "Run Fractal Tool", - click=self.fractal_vm.run_fractal_tool, # Method to call on click - disabled=("fractal_vm.run_button_disabled"), # Disable based on ViewModel state - classes="mb-2" - ) - vuetify.VCardText(("fractal_vm.message")) # Display messages from ViewModel - return layout - ``` - Key points in `create_ui()`: - * `self.state.trame__title = ...`: Sets the title of the browser window for the Trame application. - * `with super().create_ui() as layout:`: Creates the base UI layout using `ThemedApp`'s styling. - * `layouts.VBoxLayout` and `vuetify.VCard`: Basic layout components to structure the UI vertically within a card container. - * `vuetify.VRadioGroup` and `vuetify.VRadio`: Creates a group of radio buttons for selecting the fractal type. **Crucially, `v_model=("fractal_vm.fractal_type", "mandelbrot")` establishes a *two-way data binding***. Changes in the UI radio buttons will update `fractal_vm.fractal_type` in the ViewModel, and vice versa. `"mandelbrot"` sets the default value. - * `vuetify.VBtn`: Creates a button labeled "Run Fractal Tool". - * `click=self.fractal_vm.run_fractal_tool`: Binds the button's `click` event to call the `run_fractal_tool` method in our `FractalViewModel`. - * `disabled=("fractal_vm.run_button_disabled")`: **Binds the button's `disabled` state to the `run_button_disabled` property in the ViewModel**. The button will be disabled when `fractal_vm.run_button_disabled` is `True` and enabled when `False`. - * `vuetify.VCardText(("fractal_vm.message"))`: Displays text within the card. **Binds the content of the `VCardText` to the `message` property of the ViewModel**. Any changes to `fractal_vm.message` will be displayed here. - -**2. `main.py` - Starting the Trame Application (`src/nova_tutorial/main.py`):** - -* **Import `FractalApp`**: We import the `FractalApp` class from `nova_tutorial.views.fractal_view`: - ```python - # src/nova_tutorial/main.py - from nova_tutorial.views.fractal_view import FractalApp + from nova.trame.view import layouts + from trame.widgets import vuetify3 as vuetify + + with layouts.HBoxLayout(): + vuetify.VTextField(label="First Name") + vuetify.VTextField(label="Last Name") ``` -* **Instantiate and Start `FractalApp`**: In the `main()` function, we create an instance of `FractalApp` and call `app.server.start()` to launch the Trame application: + This code creates a horizontal layout and stacks the text fields horizontally. - ```python - def main(): - app = FractalApp() # Instantiate the FractalApp (which creates the UI and ViewModel) - app.server.start() # Start the Trame server, launching the web application +By combining these layout components, you can create complex and responsive UI layouts. - if __name__ == "__main__": - main() - ``` - `app.server.start()` is the essential command to start the Trame server, which will open your web browser and display the user interface defined in `FractalApp`. +## Adding More UI Components to the Sample Tabs -## Running the application +Now, let\'s add some UI components to the Sample Tabs in our application to demonstrate how to use these components. We\'ll modify the `sample_tab_1.py` and `sample_tab_2.py` files to include these components. -To run the code, use the following command in the top level of your `nova_tutorial` project: +**1. `nova_tutorial/views/sample_tab_1.py` (Modify):** -```bash -poetry run app -``` +We\'ll add an `InputField` and a `VBoxLayout` to this tab. + +```python +"""Module for the Sample Tab 1.""" -You should now see a simple UI in your browser. +from nova.trame.view.components import InputField +from nova.trame.view import layouts +from trame.widgets import vuetify3 as vuetify -## Adding More UI Components +class SampleTab1: + """Sample tab 1 view class. Renders text input for username.""" -Let's enhance our UI by adding a few more common Vuetify components. We'll add: + def __init__(self) -> None: + self.create_ui() -* **`VTextField`:** For text input (although not connected to backend logic in this tutorial). -* **`VCheckbox`:** For boolean input (again, not connected to backend). -* **`VSlider`:** For numerical input (not connected). + def create_ui(self) -> None: + with layouts.VBoxLayout(classes="ma-2"): + InputField(v_model="config.username", label="Username") + vuetify.VCheckbox(label="Remember me") +``` -Modify your `src/nova_tutorial/views/fractal_view.py` to include these components within the `VCard` in the `create_ui` method: +**2. `nova_tutorial/views/sample_tab_2.py` (Modify):** + +We\'ll add a `GridLayout` and an `InputField` to this tab. ```python -# src/nova_tutorial/views/fractal_view.py -from nova.mvvm.trame_binding import TrameBinding -from nova.trame import ThemedApp +"""Module for the Sample Tab 2.""" + +from nova.trame.view.components import InputField from nova.trame.view import layouts -from trame.app import get_server from trame.widgets import vuetify3 as vuetify -from nova_tutorial.view_models.fractal_view_model import FractalViewModel -class FractalApp(ThemedApp): +class SampleTab2: + """Sample tab 2 view class. Renders text input for user password.""" + def __init__(self) -> None: - super().__init__() - self.server = get_server(None, client_type="vue3") - self.fractal_vm = FractalViewModel(TrameBinding(self.server.state)) self.create_ui() def create_ui(self) -> None: - self.state.trame__title = "NOVA Tutorial" - with super().create_ui() as layout: - with layout.content: - with layouts.VBoxLayout(classes="ma-2"): - with vuetify.VCard(classes="pa-2"): - vuetify.VTextField(label="Example Text Input", classes="mb-2") # Added VTextField - vuetify.VCheckbox(label="Example Checkbox", classes="mb-2") # Added VCheckbox - vuetify.VSlider(label="Example Slider", v_model=25, classes="mb-2") # Added VSlider - with vuetify.VRadioGroup( - v_model=("fractal_vm.fractal_type", "mandelbrot"), - classes="mb-2", - ): - vuetify.VRadio(label="Mandelbrot", value="mandelbrot") - vuetify.VRadio(label="Julia", value="julia") - vuetify.VRadio(label="Random", value="random") - vuetify.VRadio(label="Markus", value="markus") - vuetify.VBtn( - "Run Fractal Tool", - click=self.fractal_vm.run_fractal_tool, - disabled=("fractal_vm.run_button_disabled"), - classes="mb-2" - ) - vuetify.VCardText(("fractal_vm.message")) - return layout + with layouts.GridLayout(columns=2, classes="ma-2"): + InputField(v_model="config.password", label="Password", type="password") + vuetify.VSlider(label="Volume") ``` -We've simply added a `VTextField`, `VCheckbox`, and `VSlider` component within the `VCard`. These are not yet connected to the ViewModel - they are just there to demonstrate adding different UI elements. +In `SampleTab1`, we\'ve used a `VBoxLayout` to vertically stack the `InputField` and `VCheckbox` components. In `SampleTab2`, we\'ve used a `GridLayout` to arrange the `InputField` and `VSlider` components in a two-column grid. ## Running the application To run the code, use the following command in the top level of your `nova_tutorial` project: ```bash -poetry run app +poetry run start ``` -You should now see a UI with a text field, checkbox, slider, radio buttons, and the "Run Fractal Tool" button. +You should now see the simple UI. When you click the "Sample Tab 1" and "Sample Tab 2" tabs, you should now see the updated content with the new UI components. -## Exercises +::::::::::::::::::::::::::::::::::::::: challenge +**Explore the `InputField` Component** +Modify the `InputField` component in `SampleTab1` to automatically retrieve the label, hint, and validation rules from a Pydantic model field. Create a simple Pydantic model with a `username` field with a `title`, `description`, and `min_length` constraint. +:::::::::::::::::::::::::::::::::::::::::::::::::: -1. **Explore Vuetify Components:** Visit the Vuetify 3 component documentation ([https://vuetifyjs.com/en/components/all/](https://vuetifyjs.com/en/components/all/)). Browse through the list of available components. Identify at least three new components that you think could be useful in a scientific application UI and briefly describe their purpose. -2. **Add a `VSelect` (Dropdown):** Add a `VSelect` component to the UI in `fractal_view.py` within the `VCard`. Make it offer a dropdown of color options (e.g., "Red", "Green", "Blue"). *(You don't need to connect it to the viewmodel.)* -3. **Customize Component Appearance:** Experiment with customizing the appearance of the `VBtn` component. Try changing its color, adding an icon *after* the text (e.g., using the `append-icon` prop and a Material Design Icon name), and modifying its size using Vuetify props (refer to the Vuetify documentation for `VBtn`). +::::::::::::::::::::::::::::::::::::::: challenge +**Create a Complex Layout** +Combine `GridLayout`, `VBoxLayout`, and `HBoxLayout` components to create a more complex UI layout in `SampleTab2`. Try creating a layout with a header, a sidebar, and a main content area. +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge +**Customize Component Appearance** +Experiment with customizing the appearance of the Vuetify components using the various props and styles available. Try changing the color, size, font, and other visual attributes of the components. Refer to Vuetify\'s component documentation for details. +:::::::::::::::::::::::::::::::::::::::::::::::::: ## References * **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ * **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ -* **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ \ No newline at end of file +* **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ +* **Vuetify Documentation**: https://vuetifyjs.com/en/ +``` diff --git a/episodes/06-Advanced-Data-Modeling.md b/episodes/06-Advanced-Data-Modeling.md index 94a491ab66f214d4245c424c95cb206304673b53..246471161f3743575b76206aeb0b4ac54212ebdc 100755 --- a/episodes/06-Advanced-Data-Modeling.md +++ b/episodes/06-Advanced-Data-Modeling.md @@ -1,164 +1,130 @@ --- -title: "Advanced Data model Validation Using Pydantic" -teaching: 10 -exercises: 3 +title: "Data Validation with Pydantic" +teaching: 20 +exercises: 0 --- -# Advanced Data Model Validation Using Pydantic +::::::::::::::::::::::::::::::::::::::: objectives -In this section, we will delve deeper into Pydantic and explore more advanced data validation techniques. We will expand upon the basic Pydantic introduction from Day 1 and learn how to define more complex data models and validation rules. +- Define nested Pydantic models to represent complex data structures. +- Implement custom validation logic using Pydantic validator decorators (`@model_validator`). +- Trigger and observe validation errors for nested models. +- Apply custom validators to enforce business-specific rules. +- Explore different types of Pydantic validators (`@model_validator`, `@field_validator`, `@root_validator`) and understand their use cases. -## Advanced Pydantic Features +:::::::::::::::::::::::::::::::::::::::::::::::::: -Building upon our basic understanding of Pydantic, let's explore some advanced features that make it even more powerful for data validation and management: +:::::::::::::::::::::::::::::::::::::::: questions -* **Nested Models:** Pydantic allows you to define models that are nested within each other. This is useful for representing complex data structures. -* **List and Dictionary Validation:** Pydantic can validate lists and dictionaries, ensuring that the elements within them conform to specific types or models. -* **Custom Validation:** Pydantic provides mechanisms for defining custom validation functions to enforce business-specific rules beyond basic type checking. -* **Data Transformation:** Pydantic can automatically transform data during validation (e.g., converting strings to dates, cleaning up whitespace). +- How can I represent complex data structures with nested relationships using Pydantic? +- How can I enforce validation rules that go beyond basic type checking using Pydantic? +- How do I define custom validation logic for Pydantic models? +- What are the different types of Pydantic validators, and when should I use each one? +- How can I trigger and observe validation errors in my Pydantic models? +- How do I use Pydantic models and validators effectively in conjunction with my viewmodel? -## Nested Pydantic Models +:::::::::::::::::::::::::::::::::::::::::::::::::: -Let's imagine we want to represent more complex input for our fractal tool. Suppose we want to group parameters related to the fractal's appearance into a nested model. Modify your `src/nova_tutorial/view_models/fractal_view_model.py` to include a nested model like `FractalAppearance`: +# 6. Data Validation with Pydantic: Ensuring Data Integrity -```python -# src/nova_tutorial/view_models/fractal_view_model.py -import os -from nova.galaxy import Nova, Parameters, Tool -from nova.mvvm.interface import BindingInterface -from pydantic import BaseModel, ValidationError -from typing import Literal, Optional - -class FractalAppearance(BaseModel): # Nested Model - color_palette: Optional[Literal["viridis", "magma", "plasma"]] = "viridis" # Optional field with default - -class FractalToolInput(BaseModel): - fractal_type: Literal["mandelbrot", "julia", "random", "markus"] - appearance: FractalAppearance = FractalAppearance() # Nested model as a field - - -class FractalViewModel(): - def __init__(self, binding: BindingInterface): - super().__init__() - self._fractal_type = "mandelbrot" # Default fractal type - self.galaxy_url = os.getenv("GALAXY_URL") - self.galaxy_key = os.getenv("GALAXY_API_KEY") - self._run_button_disabled = False - self._message = "" - self.run_button_disabled_bind = binding.new_bind( - linked_object=self, - linked_object_arguments=["_run_button_disabled"], - ) - self.message_bind = binding.new_bind( - linked_object=self, - linked_object_arguments=["_message"], - ) - self.fractal_type_bind = binding.new_bind(linked_object=self, linked_object_arguments=["_fractal_type"]) - - - def set_fractal_type(self, fractal_type: str): - try: - FractalToolInput(fractal_type=fractal_type) - except ValidationError as e: - self._message = f"Validation Error: {e}" - self.message_bind.update_in_view(self._message) - return - self._fractal_type = fractal_type - self.fractal_type_bind.update_in_view(self._fractal_type) - - def run_fractal_tool(self): - """Runs the fractal tool with the current fractal type.""" - if not self.galaxy_url or not self.galaxy_key: - self._message = "You must specify GALAXY_URL and GALAXY_API_KEY as environment variables." - self.message_bind.update_in_view(self._message) - return - - self._run_button_disabled = True - self.run_button_disabled_bind.update_in_view(self._run_button_disabled) - try: - nova = Nova(galaxy_url=self.galaxy_url, galaxy_key=self.galaxy_key) - tool = Tool(id="neutrons_fractal") - params = Parameters() - params.add_input(name="fractal_type", value=self._fractal_type) - - with nova.connect() as galaxy_connection: - data_store = galaxy_connection.create_data_store(name="fractal_store") - tool.run(data_store, params) - # Datastore is deleted after function exists - self._message = "Fractal tool finished successfully." - except Exception as e: - self._message = f"Error running fractal tool: {e}" - finally: - self.message_bind.update_in_view(self._message) - self._run_button_disabled = False - self.run_button_disabled_bind.update_in_view(self._run_button_disabled) - - @property - def run_button_disabled(self): - return self._run_button_disabled - - @run_button_disabled.setter - def run_button_disabled(self, value): - self._run_button_disabled = value - - @property - def message(self): - return self._message - - @message.setter - def message(self, value): - self._message = value - - @property - def fractal_type(self): - return self._fractal_type - - @fractal_type.setter - def fractal_type(self, value): - self.set_fractal_type(value) -``` +In this section, we will explore Pydantic, a powerful Python library for data validation and settings management. We\'ll delve into the benefits of data validation, how Pydantic works, and best practices for using it effectively within the NOVA framework and the MVVM architecture. + +## Why Data Validation Matters + +Data validation is the process of ensuring that data meets certain criteria before it\'s processed by your application. It\'s a crucial step in building robust and reliable software. Without proper data validation, your application could be vulnerable to: + +* **Unexpected Errors:** Invalid data can cause your application to crash or produce incorrect results. +* **Security Vulnerabilities:** Malicious users can exploit the lack of data validation to inject harmful data into your application, leading to security breaches. +* **Data Corruption:** Invalid data can corrupt your data stores, leading to data loss or inconsistency. +* **Integration Issues:** When interacting with external systems or APIs, data validation ensures that your data conforms to the expected format and constraints. + +Data validation helps you: + +* **Improve Data Quality:** By enforcing data constraints, you ensure that your application works with clean and consistent data. +* **Enhance Application Reliability:** By preventing invalid data from being processed, you reduce the risk of errors and crashes. +* **Strengthen Security:** By sanitizing user input and validating data from external sources, you protect your application from security threats. + +## Introduction to Pydantic -We've added `FractalAppearance` as a nested model and included it as a field in `FractalToolInput`. Note that `color_palette` is optional and has a default value. +Pydantic is a Python library that provides a powerful and elegant way to define data models and enforce data validation. It uses Python type hints to define the structure of your data and automatically validates data against these types at runtime. + +Key Features of Pydantic: + +* **Data Validation:** Automatically validates data types and constraints, ensuring data integrity. Pydantic supports a wide range of validation options, including type checking, length constraints, regular expressions, custom validators, and more. +* **Clear Data Structures:** Defines data models in a clear and readable way using Python type hints. Pydantic models are easy to understand and maintain. +* **Serialization and Deserialization:** Easily serializes data to and from standard formats like JSON. This is useful for interacting with APIs and other external systems. +* **Settings Management:** Can be used to manage application settings and configuration, providing a centralized and type-safe way to access configuration values. +* **Improved Code Readability:** Makes code easier to understand and maintain by explicitly defining data models. Type hints make it clear what type of data is expected for each field. + +## How Pydantic Works + +Pydantic uses Python type hints to define data models. When you create an instance of a Pydantic model, Pydantic automatically validates the input data against the defined types and constraints. + +Here\'s a simple example: + +```python +from pydantic import BaseModel, Field -## Custom Validation +class User(BaseModel): + id: int = Field(default=1, gt=0) # id must be an integer greater than 0 + name: str = Field(default="someName", min_length=1) # name must be a string with at least one character + email: str = Field(default="test@test.com", regex=r"^[a-zA-Z0-9._%+-]+@[a-zA-Z0-9.-]+\.[a-zA-Z]{2,}$") # email must be a valid email address +``` -Pydantic allows for custom validation logic using validator decorators. Let's add a custom validator to `FractalToolInput` to ensure that if `fractal_type` is "julia", then `color_palette` must be specified as "plasma". *(This is a contrived example for demonstration purposes.)* +In this example, we define a `User` model with three fields: `id`, `name`, and `email`. We use type hints to specify the data type for each field (e.g., `int`, `str`) and `Field` with validation arguments to specify additional constraints (e.g., `gt=0`, `min_length=1`, `regex=...`). -Add the following validator to the `FractalToolInput` model in `src/nova_tutorial/view_models/fractal_view_model.py`: +When you create an instance of the `User` model, Pydantic automatically validates the input data: ```python -# ... inside FractalToolInput class ... - @pydantic.model_validator(mode='after') - def check_julia_palette(self) -> 'FractalToolInput': - if self.fractal_type == "julia" and self.appearance.color_palette != "plasma": - raise ValueError("For 'julia' fractals, color_palette must be 'plasma'.") - return self +from pydantic import ValidationError + +try: + user = User(id=0, name="", email="invalid-email") +except ValidationError as e: + print(e) ``` -You'll also need to import `pydantic` at the top of the file: `import pydantic`. +If the input data is invalid, Pydantic raises a `ValidationError` exception with detailed information about the validation errors. + +## Where to Perform Validation: Model vs. ViewModel + +In the MVVM architecture, the question arises: where should data validation be performed? Should it be done in the Model or the ViewModel? + +* **Model Validation:** Validating data in the Model ensures that the underlying data is always in a valid state. This is especially important for data that is stored in a database or used by other parts of the application. However, Model validation is not always UI-specific. + +* **ViewModel Validation:** Validating data in the ViewModel allows you to perform UI-specific validation, such as checking that a required field is not empty or that a value falls within a certain range. ViewModel validation is also useful for providing immediate feedback to the user about validation errors. + +In general, it\'s a good practice to perform both Model and ViewModel validation. Model validation ensures data integrity at the data level, while ViewModel validation provides a better user experience by providing immediate feedback and preventing invalid data from being passed to the Model. Pydantic supports both. + +In the context of our NOVA tutorial, here\'s how we can apply this: -This validator function is decorated with `@pydantic.model_validator(mode='after')`, which means it runs *after* the basic field validation. It checks the condition and raises a `ValueError` if the rule is violated. +* **NDIP Interactions (Model):** When using `nova-galaxy` to interact with NDIP, validate the data being sent to NDIP in the Model to ensure it conforms to the NDIP API requirements. -## Running the application +* **UI Input (ViewModel):** When the user enters data in the UI, validate the data in the ViewModel to provide immediate feedback to the user. -To run the code, use the following command in the top level of your `nova_tutorial` project: +## Pydantic and `nova-trame` Input Validation -```bash -poetry install -poetry run app +One of the great features of `nova-trame` is that it leverages the validation attributes of Pydantic models to automatically create validation routines for Vuetify UI elements. Let\'s walk through what that looks like in code. + +First, let\'s assume you have the following model: + +```python +from pydantic import BaseModel, Field + +class SettingsModel(BaseModel): + port: int = Field(default=8080, gt=0, lt=65536, title="Port Number", description="The port to listen on.") ``` -This will still run the application, but now Pydantic models with nested structures and custom validation are defined. +Then in your view, you create the following InputField: -## Exercises +```python +from nova.trame.view.components import InputField + +InputField(v_model="settings.port") +``` -1. **Trigger Nested Model Validation:** Modify the `set_fractal_type` method to also set a value for `appearance.color_palette` when the `fractal_type` is set. Try setting an invalid `color_palette` value (e.g., `"invalid_palette"`). What validation error do you observe? -2. **Trigger Custom Validator:** Modify the `set_fractal_type` method to set `fractal_type` to `"julia"` and `appearance.color_palette` to `"viridis"`. Run the application. What validation error do you see now? Why? -3. **Explore Pydantic Validators:** Refer to the Pydantic documentation on validators ([https://docs.pydantic.dev/latest/usage/validators/](https://docs.pydantic.dev/latest/usage/validators/)). Identify at least two other types of validators (e.g., `@field_validator`, `@root_validator`). Briefly describe their purpose and how they differ from `@model_validator`. +Notice how you don\'t need to pass any attributes to `InputField` other than `v_model`. The `InputField` automatically retrieves the `title` and attempts to retrieve other information. -## References +The InputField performs automatic validation for this field. If you enter an invalid port number into the InputField, the InputField will change state to invalid and the label will turn red. -* **Nova Documentation**: https://nova-application-development.readthedocs.io/en/latest/ -* **nova-galaxy documentation**: https://nova-application-development.readthedocs.io/projects/nova-galaxy/en/latest/ -* **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ -* **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ \ No newline at end of file +In that fashion, the `InputField` seamlessly pulls information from your code\'s data model and displays errors to the user. \ No newline at end of file diff --git a/episodes/07-Advanced-Visualizations.md b/episodes/07-Advanced-Visualizations.md index a3fa26d197345efdb1ae0f9efca42e1249cf9a76..ae1895f0c93c7e92df2fb820edc5e3cb38488f4b 100755 --- a/episodes/07-Advanced-Visualizations.md +++ b/episodes/07-Advanced-Visualizations.md @@ -4,6 +4,29 @@ teaching: 10 exercises: 1 --- +::::::::::::::::::::::::::::::::::::::: objectives + +- Describe the purpose of Plotly for interactive 2D charts. +- Explain how to integrate Plotly charts into Trame applications using `trame-plotly`. +- Describe the purpose of PyVista for interactive 3D visualizations. +- Explain how to integrate PyVista visualizations into Trame applications using `trame-vtk`. +- Explain how to work directly with VTK for 3D visualizations within Trame applications. +- Understand the basic boilerplate code required to set up a VTK rendering pipeline in Trame. + +:::::::::::::::::::::::::::::::::::::::::::::::::: + +:::::::::::::::::::::::::::::::::::::::: questions + +- How can I create interactive 2D charts in my NOVA application? +- How can I integrate Plotly charts into Trame applications? +- How can I create interactive 3D visualizations in my NOVA application? +- What are the advantages and disadvantages of using PyVista vs. VTK for 3D visualizations? +- How can I integrate PyVista visualizations into Trame applications? +- How can I work directly with VTK for more advanced 3D visualizations in Trame? +- What are the key components of a VTK rendering pipeline? + +:::::::::::::::::::::::::::::::::::::::::::::::::: + # Advanced Visualizations In this section, we will look at a selection of the libraries that integrate well with Trame for producing more sophisticated visualizations of your data. Specifically, we will look at Plotly for interactive 2D charts, PyVista for interactive 3D visualizations, and VTK for advanced 3D visualizations. @@ -111,7 +134,7 @@ As with our previous examples, there is a corresponding model. return self.plot_type != "heatmap" ``` -* **Plotly Figure Setup**: Finally, we define the Plotly figure based on the user's selection. go.Heatmap and go.Scatter define Plotly `traces`, which represent individual components of the figure. +* **Plotly Figure Setup**: Finally, we define the Plotly figure based on the user\'s selection. go.Heatmap and go.Scatter define Plotly `traces`, which represent individual components of the figure. ```python def get_figure(self) -> go.Figure: @@ -137,7 +160,7 @@ As with our other examples, the view model connects these two classes together. ## PyVista (3D) -One of Trame's core features is that it has direct integration with VTK for building 3D visualizations. Learning VTK from scratch is non-trivial, however, so we recommend that you work with PyVista. PyVista serves as a more developer-friendly wrapper around VTK, allowing you to build your visualizations with a simpler, more intuitive API. To get started, you will need to install the Python package. +One of Trame\'s core features is that it has direct integration with VTK for building 3D visualizations. Learning VTK from scratch is non-trivial, however, so we recommend that you work with PyVista. PyVista serves as a more developer-friendly wrapper around VTK, allowing you to build your visualizations with a simpler, more intuitive API. To get started, you will need to install the Python package. ```bash poetry add pyvista trame-vtk @@ -165,7 +188,7 @@ Now we can set up our view. from nova_tutorial.view_models.visualization import VisualizationViewModel ``` -* **Class Definition:** The `Plotter` object is PyVista's main entry point. It will allow you to add meshes and volumes with the properties you've specified. +* **Class Definition:** The `Plotter` object is PyVista\'s main entry point. It will allow you to add meshes and volumes with the properties you\'ve specified. ```python class PyVistaView: @@ -207,7 +230,7 @@ Now we can set up our view. **4. `PyVistaConfig` Model Class (`src/nova_tutorial/models/pyvista.py`):** -* **Imports:** `download_knee_full` yields a 3D dataset that is suitable for volume rendering. You can find more datasets in PyVista's [Dataset Gallery](https://docs.pyvista.org/api/examples/dataset_gallery). +* **Imports:** `download_knee_full` yields a 3D dataset that is suitable for volume rendering. You can find more datasets in PyVista\'s [Dataset Gallery](https://docs.pyvista.org/api/examples/dataset_gallery). ```python """Configuration for the PyVista example.""" @@ -251,7 +274,7 @@ If you have prior experience with VTK then you may prefer to work with it direct poetry add trame-vtk vtk ``` -Since we've seen plenty of examples of UI controls at this point, we've omitted them for this example so that we can focus on the VTK boilerplate needed to get started. +Since we\'ve seen plenty of examples of UI controls at this point, we've omitted them for this example so that we can focus on the VTK boilerplate needed to get started. **5. `VTKView` View Class (`src/nova_tutorial/views/vtk.py`):** @@ -362,11 +385,20 @@ Since we've seen plenty of examples of UI controls at this point, we've omitted return self.volume ``` -## Exercises +::::::::::::::::::::::::::::::::::::::: challenge +**Plotly Box Plot** +Add a box plot to the available plot types. Hint: you shouldn\'t need to change anything in the view class to do this. +:::::::::::::::::::::::::::::::::::::::::::::::::: + +::::::::::::::::::::::::::::::::::::::: challenge +**PyVista clim Control** +Add control(s) to the UI to control the `clim` argument for the `add_volume` method. +:::::::::::::::::::::::::::::::::::::::::::::::::: -1. **Plotly Box Plot:** Add a box plot to the available plot types. Hint: you shouldn't need to change anything in the view class to do this. -2. **PyVista clim Control:** Add control(s) to the UI to control the `clim` argument for the `add_volume` method. -3. **Investigate the lookup table and piecewise function:** We didn't look at `VTKConfig.init_lut` or `VTKConfig.init_pwf` during the tutorial. Read through these methods and then trys manipulating the opacity of the rendering. +::::::::::::::::::::::::::::::::::::::: challenge +**Investigate the lookup table and piecewise function** +We didn\'t look at `VTKConfig.init_lut` or `VTKConfig.init_pwf` during the tutorial. Read through these methods and then trys manipulating the opacity of the rendering. +:::::::::::::::::::::::::::::::::::::::::::::::::: ## References diff --git a/episodes/08-Next-Steps.md b/episodes/08-Next-Steps.md index fde8b0d76ed5b47f6b3252ded128d18846f59211..7bbe3e512ec97c7cc517e91f0e350a9bf4815a7d 100755 --- a/episodes/08-Next-Steps.md +++ b/episodes/08-Next-Steps.md @@ -1,19 +1,19 @@ --- -title: "Next Steps" +title: "Development Cycle and Next Steps" teaching: 10 exercises: 0 --- # Next Steps -In this section, we will outline the process for taking an application like the one we've created in this tutorial and deploying it to the NOVA/NDIP platform. While we won't actually perform the deployment in this tutorial, we will cover the key steps and resources involved. +In this section, we will outline the process for taking an application like the one we\'ve created in this tutorial and deploying it to the NOVA/NDIP platform. While we won\'t actually perform the deployment in this tutorial, we will cover the key steps and resources involved. ## Containerizing Your Application The first step in deploying your application to the NOVA/NDIP platform is to package it as a Docker container. Docker containers provide a lightweight and portable way to package your application and all of its dependencies. This ensures that your application will run consistently across different environments. -Fortunately, the template application we used in this tutorial already includes a `dockerfiles/Dockerfile` that you can use as a starting point. The Dockerfile is a set of instructions that Docker uses to build your container image. +Fortunately, the template application we used in this tutorial already includes a `Dockerfile` that you can use as a starting point. The Dockerfile is a set of instructions that Docker uses to build your container image. -Here's what the Dockerfile typically includes: +Here\'s what the Dockerfile typically includes: * **Base Image:** Specifies the base operating system and environment for your application. * **Dependencies:** Describes how to install any required libraries or packages. * **Application Files:** Defines how to copy your application code into the container. @@ -27,6 +27,10 @@ To containerize your application, you would: After the docker container is deployed to a registry, it can then be used by the platform. +::::::::::::::::::::::::::::::::::::::::: callout +GPU acceleration in a container is possible but beyond the scope of this tutorial. Typically, a base container is chosen which already has all of the gpu dependencies installed such as ```regproxy.ornl.gov/hub_proxy/kitware/trame:py3.10-glvnd-2024-12```. The team has built similar containers already which can be used as a reference for development, such as, ```https://code.ornl.gov/ndip/trame-apps/ct-scan-visualizer/``` +:::::::::::::::::::::::::::::::::::::::::::::::::: + ## Defining Your Tool with XML Once your application is containerized, you will also need to define your tool using an XML file. This XML file describes your tool to the NDIP platform, including its inputs, outputs, parameters, and the Docker container image that should be used to run the tool. The NDIP platform makes use of the Galaxy tool framework. @@ -39,12 +43,31 @@ The XML file includes: * **Container Image:** Specifies the Docker image that should be used to run the tool. * **Command:** Specifies the command line that is executed inside the docker container. -You can find numerous examples of Galaxy tool XML files in the NDIP GitHub repository: +You can find numerous examples of Galaxy tool XML files in the NDIP GitLab repository: [https://code.ornl.gov/ndip/galaxy-tools](https://code.ornl.gov/ndip/galaxy-tools) Detailed documentation on creating tool XML files is available on the Calvera documentation site: [calvera.ornl.gov/docs/dev](calvera.ornl.gov/docs/dev) +## Development Lifecycle + +### How to get a new tool on NDIP + +After creating your tool\'s XML file, it needs to be added to the NDIP platform. For testing your tool on the platform, it should be uploaded to the *prototype* branch of the GitLab repository linked above. An automated CI job will push your tool to the calvera-test instance. Test your application via the web browser interface. After you\'ve verified that your tool is performing as expected, submit a merge request to the repository\'s *dev* branch and engage with our team. When first adding a tool to the platform, Calvera admins will need to configure Calvera to use the tool. + +Create an issue in the [galaxy tools](https://code.ornl.gov/ndip/galaxy-tools/-/issues/new) repository providing the following information: +The name of the XML file you've created (see more about XML files here) +The tool ID (i.e. neutrons_my_new_tool) +The section name where your tool should appear in the tool panel +Whether the tool will need a GPU +Additional developers who will be working on the tool (if this is their first time contributing to this repository) + +The *dev* branch is used as a staging branch for tools that are ready to be put in front of users. Tools here will be added to the NDIP production instance, Calvera, during the next deployment. + +### Continued Development + +The process for continuing development on an existing tool is very similar to getting a new tool on the platform except that the initial configuration does not need to be repeated. You will continue to develop on the *prototype* branch, where you can push and test changes. Once you are satisified with the new version of your tool, submit a merge request to update the the tool in the *dev* branch. Our team will review these changes, perform the merge, and the new version of the tool will be updated on the NDIP production instance, Calvera, during the next deployment. + ## Putting It All Together Once you have your Docker container and tool XML file, you would: @@ -65,5 +88,5 @@ After performing these steps, your application will be available to NDIP users. * **nova-trame documentation**: https://nova-application-development.readthedocs.io/projects/nova-trame/en/stable/ * **nova-mvvm documentation**: https://nova-application-development.readthedocs.io/projects/mvvm-lib/en/latest/ -By following the steps outlined in this section, you can deploy your own applications to the NOVA/NDIP platform and make them available to the wider scientific community. +By following the steps outlined in this section, you can deploy your own applications to the NDIP platform and make them available to the wider scientific community. ``` \ No newline at end of file diff --git a/episodes/fig/Topaz.png b/episodes/fig/Topaz.png new file mode 100644 index 0000000000000000000000000000000000000000..0b2ecd5de5d923e6ff9f88082eb09c48c78d10f8 Binary files /dev/null and b/episodes/fig/Topaz.png differ diff --git a/episodes/fig/mvvm.png b/episodes/fig/mvvm.png new file mode 100644 index 0000000000000000000000000000000000000000..4f44f6e2c4d3ee895c8097abaea342467cf90e23 Binary files /dev/null and b/episodes/fig/mvvm.png differ diff --git a/episodes/fig/pyvista_bone_break.png b/episodes/fig/pyvista_bone_break.png new file mode 100644 index 0000000000000000000000000000000000000000..3293be124c3f8370b1fabbf83341c85c9ac26786 Binary files /dev/null and b/episodes/fig/pyvista_bone_break.png differ diff --git a/index.md b/index.md index af662764cc625d024ee2232cffca526ac758aab5..bf191f3ceb3c49a591aa059162b53538a2473909 100755 --- a/index.md +++ b/index.md @@ -2,8 +2,34 @@ site: sandpaper::sandpaper_site --- -This is a new lesson built with [The Carpentries Workbench][workbench]. +# NOVA Tutorial: Building Interactive Neutron Analysis Tools +This tutorial guides you through the process of building interactive web applications for neutron data analysis using the NOVA *framework*. It leverages the Model-View-ViewModel (MVVM) architectural pattern and three key NOVA libraries: `nova-galaxy`, `nova-trame`, and `nova-mvvm`, to simplify interaction with the Neutron Data Interpretation Platform (NDIP). -[workbench]: https://carpentries.github.io/sandpaper-docs +**Key Learning Objectives:** +* **Introduction to NDIP and NOVA:** Understand the purpose of NDIP as a workflow management system for neutron data and NOVA as a framework for simplifying NDIP application development. +* **Project Setup:** Learn how to use the `copier` library to clone a template application, providing a basic project structure and pre-configured files. +* **NDIP Interaction with `nova-galaxy`:** Master the use of `nova-galaxy` to connect to NDIP, define and run tools, and manage input parameters. +* **MVVM Implementation with `nova-mvvm` and Pydantic:** Grasp the principles of the MVVM design pattern and implement it using `nova-mvvm`. Utilize Pydantic for data validation and defining data models for inputs. +* **Web UI Development with `nova-trame`:** Build a web-based user interface using `nova-trame` and Vuetify components. Implement two-way data binding between UI elements and the ViewModel. +* **Advanced Pydantic Validation:** Explore advanced Pydantic features like nested models and custom validators for more robust data validation. +* **Advanced Visualization Techniques:** Integrate libraries like Plotly, PyVista and VTK with Trame to produce sophisticated 2D and 3D data visualizations. +* **Deployment to NOVA/NDIP:** Learn the steps for containerizing your application with Docker, defining your tool with an XML file, and deploying it to the NOVA/NDIP platform. + +**Core Components and Workflow:** + +1. **Start with the NOVA Template:** Use `copier` to create a starting point. +2. **Define Data with Pydantic:** Create Pydantic models for structured data and validation. +3. **Implement the MVVM Pattern:** + * Use the `Model` layer to define the application data and business logic, including connecting to NDIP via `nova-galaxy`. + * Create a `ViewModel` to serve as an intermediary between the `Model` and `View`, exposing data and handling user interactions. + * Construct the `View` (UI) using `nova-trame` and Vuetify, binding UI elements to the ViewModel. +4. **Interact with NDIP:** Use `nova-galaxy` to connect to NDIP, run tools, and manage data. +5. **Develop the User Interface:** Build a web-based user interface using `nova-trame` and Trame. +6. **Create advanced visualizations:** Integrate Plotly, PyVista, and VTK libraries to visualize data in the UI. +7. **Deploy the Application:** Containerize your application and deploy it to the NDIP platform for others to use. + +**Outcome:** + +By the end of this tutorial, you will have a solid understanding of the NOVA *framework*, its core libraries, and the MVVM design pattern. You will be able to build interactive web applications that connect to NDIP, run neutron data analysis tools, and visualize the results, empowering you to create custom tools for the neutron scattering community. The tutorial also provides a pathway for deploying your application to the NOVA/NDIP platform. \ No newline at end of file diff --git a/learners/setup.md b/learners/setup.md index 4244a314f580e3f451ba8bad3b84101a813d4d40..0374b1c0d17816e33f77b7eed938365fc9619127 100755 --- a/learners/setup.md +++ b/learners/setup.md @@ -1,54 +1,61 @@ --- title: Setup --- +# Setup -FIXME: Setup instructions live in this document. Please specify the tools and -the data sets the Learner needs to have installed. +This section guides you through setting up your development environment to follow along with the NOVA tutorial. It builds upon the prerequisites outlined earlier and provides specific instructions to ensure you have the necessary tools and libraries installed and configured. -## Data Sets +## 1. Verify Prerequisites - -Download the [data zip file](https://example.com/FIXME) and unzip it to your Desktop +Before proceeding, ensure you have met the following prerequisites: -## Software Setup +* **Basic Python Knowledge:** A basic understanding of Python programming concepts is required. +* **Python Installation:** You must have Python 3.8 or higher installed on your system. Verify your Python version by running `python --version` or `python3 --version` in your terminal. +* **Python's `copier` Library:** We will be using this library to generate a starting application from a template. Install it using `pip install copier`. +* **Poetry:** The code samples provided in this tutorial leverage Poetry for dependency management. If you don't have Poetry installed, follow the instructions on the official Poetry website: [https://python-poetry.org/docs/#installation](https://python-poetry.org/docs/#installation). +* **NDIP Access:** You should have access to a working NDIP system. (Specific details about NDIP access will need to be provided by the instructor.) Ensure you have the necessary credentials (API key and NDIP URL) to connect to NDIP. These will be set as environment variables, as described later. +* **NOVA Libraries:** While Poetry will manage these dependencies for you, it's helpful to be aware of the core NOVA libraries: `nova-galaxy`, `nova-trame`, and `nova-mvvm`. You can find documentation for these libraries on ReadTheDocs (links provided in the "References" section). +* **A Text Editor or IDE:** You will need a text editor or IDE (such as VS Code, Sublime Text, or Atom) for writing code. +* **Familiarity with the Command Line:** You will need to be comfortable using the command line or terminal. -::::::::::::::::::::::::::::::::::::::: discussion +## 2. Configure Environment Variables -### Details +The NOVA framework requires you to set environment variables for your NDIP URL and API key. These variables are used to authenticate with the NDIP platform. -Setup for different systems can be presented in dropdown menus via a `spoiler` -tag. They will join to this discussion block, so you can give a general overview -of the software used in this lesson here and fill out the individual operating -systems (and potentially add more, e.g. online setup) in the solutions blocks. +::::::::::::::::::::::::::::::::::::::::: callout -::::::::::::::::::::::::::::::::::::::::::::::::::: +For this tutorial, we will be using calvera-test.ornl.gov as our galaxy endpoint. Please use that for your GALAXY_URL environment variable. For NDIP, calvera-test is platform that we use for testing and development of platform tools. Once tools are mature and ready for users, they'll be migrated to calvera.ornl.gov. This process is explained in more detail at the end of the tutorial. -:::::::::::::::: spoiler +:::::::::::::::::::::::::::::::::::::::::::::::::: -### Windows -Use PuTTY +1. **Set `GALAXY_URL`:** Set the `GALAXY_URL` environment variable to the URL of your NDIP instance. Replace `` with the actual URL: -:::::::::::::::::::::::: + ```bash + export GALAXY_URL= # Linux/macOS + set GALAXY_URL= # Windows (Command Prompt) + $env:GALAXY_URL="" # Windows (PowerShell) + ``` -:::::::::::::::: spoiler +2. **Set `GALAXY_API_KEY`:** Set the `GALAXY_API_KEY` environment variable to your NDIP API key. Replace `` with your actual API key: -### MacOS + ```bash + export GALAXY_API_KEY= # Linux/macOS + set GALAXY_API_KEY= # Windows (Command Prompt) + $env:GALAXY_API_KEY="" # Windows (PowerShell) + ``` -Use Terminal.app + **Important:** For security reasons, it is recommended to avoid hardcoding your API key directly in your code. Using environment variables is a more secure and flexible approach. -:::::::::::::::::::::::: +## 3. Verify Your Setup +To ensure your setup is correct, run the following command in your terminal within the `nova_tutorial` directory: -:::::::::::::::: spoiler +```bash +echo $GALAXY_URL +echo $GALAXY_API_KEY +``` -### Linux - -Use Terminal - -:::::::::::::::::::::::: +This should print the values of your `GALAXY_URL` and `GALAXY_API_KEY` environment variables. If the values are printed correctly, your setup is complete. +You are now ready to start building your NOVA application! We will proceed in the next episode.