From e4e36e220528de5e7490eab1234650e483ae15a7 Mon Sep 17 00:00:00 2001 From: "Yakubov, Sergey" Date: Fri, 2 May 2025 08:33:00 -0400 Subject: [PATCH] fix user groups in docker run --- lib/galaxy/tool_util/deps/container_classes.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lib/galaxy/tool_util/deps/container_classes.py b/lib/galaxy/tool_util/deps/container_classes.py index 4a4f9551ba..2391d7fc7b 100644 --- a/lib/galaxy/tool_util/deps/container_classes.py +++ b/lib/galaxy/tool_util/deps/container_classes.py @@ -501,7 +501,7 @@ class DockerContainer(Container, HasDockerLikeVolumes): auto_rm=asbool(self.prop("auto_rm", docker_util.DEFAULT_AUTO_REMOVE)), set_user=self.prop("set_user", docker_util.DEFAULT_SET_USER), set_user_from_host=host_user, - run_extra_arguments=self.prop("run_extra_arguments", docker_util.DEFAULT_RUN_EXTRA_ARGUMENTS), + run_extra_arguments=run_extra_arguments, guest_ports=self.tool_info.guest_ports, container_name=self.container_name, **docker_host_props, -- GitLab