Unverified Commit fb8f001f authored by Björn Grüning's avatar Björn Grüning Committed by GitHub
Browse files

Merge pull request #19319 from kysrpex/eLabFTW 

eLabFTW integration via Galaxy file source
parents 3a036517 1d6432ef

client/src/utils/upload-payload.js

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@@ -13,6 +13,7 @@ export const URI_PREFIXES = [ 
    "drs://",

    "invenio://",

    "zenodo://",

    "elabftw://",

];



export function isUrl(content) {

lib/galaxy/config/sample/file_sources_conf.yml.sample

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@@ -238,3 +238,11 @@ 
  access_token: ${user.preferences['onedata|access_token']}

  onezone_domain: ${user.preferences['onedata|onezone_domain']}

  disable_tls_certificate_validation: ${user.preferences['onedata|disable_tls_certificate_validation']}



- type: elabftw

  id: elabftw

  label: eLabFTW

  doc: Import/export files from an eLabFTW instance.

  api_key: ${user.user_vault.read_secret('preferences/elabftw/api_key')}

  writable: true

  endpoint: ${user.preferences['elabftw|endpoint']}

lib/galaxy/config/sample/user_preferences_extra_conf.yml.sample

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@@ -153,3 +153,17 @@ preferences: 
              type: boolean

              required: False

              value: False



    # Used in file_sources_conf.yml

    elabftw:

        description: Your eLabFTW Integration Settings

        inputs:

            - name: api_key

              label: API key

              type: secret

              store: vault  # Requires setting up vault_config_file in your galaxy.yml

              required: True

            - name: endpoint

              label: URL of the eLabFTW instance you want to access

              type: text

              required: True

lib/galaxy/files/sources/elabftw.py

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