Loading doc/source/releases/24.1.rst +249 −0 Original line number Diff line number Diff line Loading @@ -64,8 +64,14 @@ Enhancements `Pull Request 18137`_ .. enhancement_tag_viz * Update parcel-built visualizations to use parcel v2 (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 18311`_ .. enhancement_tag_datatypes * Tighten axt sniffer (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 18204`_ * Better display of estimated line numbers and add number of columns for tabular (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17492`_ Loading @@ -80,11 +86,17 @@ Enhancements `Pull Request 18054`_ .. enhancement_tag_tools * Backport Qiskit Jupyter Notebook update to 24.1 (thanks to `@natefoo <https://github.com/natefoo>`__). `Pull Request 18310`_ * Rename JupyTool to something more searchable (i.e. JupyterLab which includes the substring Jupyter) (thanks to `@hexylena <https://github.com/hexylena>`__). `Pull Request 17849`_ .. enhancement_tag_workflows * Allow running and editing workflows for specific versions (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18378`_ * Update labels in Markdown editor when workflow labels change (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 17863`_ Loading Loading @@ -117,6 +129,27 @@ Enhancements `Pull Request 18046`_ .. enhancement * Backport `#18197 <https://github.com/galaxyproject/galaxy/issues/18197>`__ (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18212`_ * Drop restriction to switch to immutable histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18234`_ * Allow bookmarking public workflows (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18247`_ * More structured indexing for user data objects (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 18291`_ * Display error message if not an image in reports (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18309`_ * Add copy link to published workflow in `WorkflowCard` (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18370`_ * Onedada object store and files source stability fixes (thanks to `@bwalkowi <https://github.com/bwalkowi>`__). `Pull Request 18372`_ * Persistent toggle sections of job info (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 16983`_ Loading Loading @@ -360,11 +393,23 @@ Fixes .. bug_tag_viz * Check various preconditions in FeatureLocationIndexDataProvider (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18283`_ * Adds pinia to manually mounted vue components (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18299`_ * Fix visualizations compatible dataset filtering (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18343`_ * Fix pca 3d rendering of tabular files and visualization error handling in general (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18211`_ .. bug_tag_datatypes * Don't set dataset peek for errored jobs (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18231`_ * Npz sniffing: do not read the whole file (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17672`_ Loading @@ -373,8 +418,23 @@ Fixes `Pull Request 17937`_ .. bug_tag_tools * Raise exception when extracting dataset from collection without datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18249`_ * Fix null inputs in database operation tools (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18385`_ .. bug_tag_workflows * Drop unnecessary escaping for workflow name and annotation (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18376`_ * Fix invocation step_job_summary for new collections (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18402`_ * Fix `input_step_parameters` missing values that don't have a label (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18405`_ * Fixes for mapping workflow labels to markdown dialogs (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 17424`_ Loading Loading @@ -424,6 +484,21 @@ Fixes `Pull Request 18025`_ .. bug_tag_jobs * Restrict job_files access to jobs that are not terminal (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18217`_ * Raise appropriate exception if accessing deleted input file (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18223`_ * Fix seek in slurm memory check (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18338`_ * Do not copy purged outputs to object store (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18342`_ * Kill pulsar job if job stopped on galaxy side (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18348`_ * Always discard session after __handle_waiting_jobs is done (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 17913`_ Loading @@ -448,6 +523,15 @@ Fixes `Pull Request 18190`_ .. bug_tag_admin * Only log error if deleting directory really failed (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18236`_ * Rebuild Galaxy config (thanks to `@bgruening <https://github.com/bgruening>`__). `Pull Request 18325`_ * Downgrade doi fetch error to debug (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18330`_ * Include exception info when something goes wrong while refreshing tokens (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18008`_ Loading @@ -465,6 +549,171 @@ Fixes `Pull Request 18208`_ .. bug * do not expand datasets that are known to be inaccessible (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 17818`_ * Prevent anonymous and inactive users from running workflows (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18192`_ * Revert some requests import changes (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18199`_ * Check dataset state when attempting to acces dataset contents (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18214`_ * Raise ``RequestParameterInvalidException`` if url can't be verified (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18230`_ * Reset content-length for unhandled exceptions (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18233`_ * Fix element serialization for collections that aren't populated yet (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18235`_ * Fix userOwnsHistory conditions (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18243`_ * Small bug fixes for user data plugins (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 18246`_ * Transparently open compressed files in DatasetDataProvider (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18248`_ * Skip tests if toolshed, dx.doi not responding (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18250`_ * Fix history export error handling (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18251`_ * Remove linter for unstripped text content for tool xml leaves (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18252`_ * Fix Invenio credentials handling (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18255`_ * Set page importable to false when serializing (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18263`_ * Add missing TS migration (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18267`_ * Format with black (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18273`_ * Fix handler: access to result row items changed in SA2.0 (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18274`_ * Don't attempt to download purged datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18278`_ * Fix first_dataset_element type hint (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18284`_ * Redirect anonymous users to home when importing public histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18286`_ * Use correct link for log in or register in Copy Modal (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18289`_ * Add TS db revision tags for 24.0 (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18294`_ * Move tool shed specific driver function to tool_shed.test (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18296`_ * Fix various packages' issues (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18301`_ * Fix "label updated" popup triggers too often (thanks to `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`__). `Pull Request 18303`_ * Adapt Tool prediction API to Transformer-based deep learning architecture (thanks to `@anuprulez <https://github.com/anuprulez>`__). `Pull Request 18305`_ * Fix word bleeding in modals, sharing page and history rename (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18306`_ * Don't serialize display application links for deleted datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18307`_ * Fix non-history items drag&drop into histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18308`_ * Filter data dialog entries by dataset state, only display `ok` state (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18313`_ * Fix pinia in manually mounted components (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18315`_ * Disable state filter for collections in `HistoryFilters` (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18324`_ * Fix users API serialization when listing users (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18329`_ * Fix authentication error for anonymous users querying jobs (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18333`_ * Make sure that all Linter subclasses are imported for listing them (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18339`_ * Fix anonymous user job retrieval logic (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18358`_ * Fix check for anonymous (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18364`_ * Fix update group API payload model (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18374`_ * Sanitize FormElement error messages (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18377`_ * Fix empty usernames in database + bug in username generation (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18379`_ * Fix user's private role can be missing (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18381`_ * Fix duplicated requests when browsing files sources with pagination (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18387`_ * Fix dataset details polling re-render (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18388`_ * Assign default ``data`` extension on discovered collection output (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18389`_ * Fix workflow editor tool form scroll memory (thanks to `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`__). `Pull Request 18390`_ * Reset current page when browsing sub-folders in FilesSources (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18395`_ * Fix workflow tags initialisation in workflow editor (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18396`_ * Fix ``get_accessible_job`` if called without session (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18400`_ * Allow in_range validator for selects (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18403`_ * Ensure datatypes match on dragging elements into FormData (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18410`_ * Really allow in-range validator for txt (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18411`_ * Fix collection map over status for dragged collections (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18416`_ * Add TypedDict for JobsSummary (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18418`_ * Serialize purged flag for datasets in collections (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18420`_ * Unpin social-auth-core dependency (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 17607`_ Loading doc/source/releases/24.1_announce_user.rst +28 −1 Original line number Diff line number Diff line Loading @@ -96,6 +96,18 @@ Visualizations =========================================================== .. visualizations * Check various preconditions in FeatureLocationIndexDataProvider (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18283`_ * Add pinia to manually mounted vue components (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18299`_ * Update parcel-built visualizations to use parcel v2 (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 18311`_ * Fix visualizations compatible dataset filtering (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18343`_ * Fix pca 3d rendering of tabular files and visualization error handling in general (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18211`_ Loading @@ -104,10 +116,16 @@ Datatypes =========================================================== .. datatypes * Tighten axt sniffer (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 18204`_ * Don't set dataset peek for errored jobs (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18231`_ * Better display of estimated line numbers and add number of columns for tabular (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17492`_ * add colabfold tar file datatype * Add colabfold tar file datatype (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__). `Pull Request 17567`_ * Set minimal metadata also for empty bed datasets Loading Loading @@ -142,6 +160,15 @@ Builtin Tool Updates =========================================================== .. tools * Raise exception when extracting dataset from collection without datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18249`_ * Backport Qiskit Jupyter Notebook update to 24.1 (thanks to `@natefoo <https://github.com/natefoo>`__). `Pull Request 18310`_ * Fix null inputs in database operation tools (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18385`_ * Code cleanups from ruff and pyupgrade (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 17654`_ Loading doc/source/releases/24.1_prs.rst +92 −0 Original line number Diff line number Diff line .. github_links .. _Pull Request 17818: https://github.com/galaxyproject/galaxy/pull/17818 .. _Pull Request 18192: https://github.com/galaxyproject/galaxy/pull/18192 .. _Pull Request 18199: https://github.com/galaxyproject/galaxy/pull/18199 .. _Pull Request 18204: https://github.com/galaxyproject/galaxy/pull/18204 .. _Pull Request 18212: https://github.com/galaxyproject/galaxy/pull/18212 .. _Pull Request 18214: https://github.com/galaxyproject/galaxy/pull/18214 .. _Pull Request 18217: https://github.com/galaxyproject/galaxy/pull/18217 .. _Pull Request 18223: https://github.com/galaxyproject/galaxy/pull/18223 .. _Pull Request 18230: https://github.com/galaxyproject/galaxy/pull/18230 .. _Pull Request 18231: https://github.com/galaxyproject/galaxy/pull/18231 .. _Pull Request 18233: https://github.com/galaxyproject/galaxy/pull/18233 .. _Pull Request 18234: https://github.com/galaxyproject/galaxy/pull/18234 .. _Pull Request 18235: https://github.com/galaxyproject/galaxy/pull/18235 .. _Pull Request 18236: https://github.com/galaxyproject/galaxy/pull/18236 .. _Pull Request 18239: https://github.com/galaxyproject/galaxy/pull/18239 .. _Pull Request 18243: https://github.com/galaxyproject/galaxy/pull/18243 .. _Pull Request 18244: https://github.com/galaxyproject/galaxy/pull/18244 .. _Pull Request 18246: https://github.com/galaxyproject/galaxy/pull/18246 .. _Pull Request 18247: https://github.com/galaxyproject/galaxy/pull/18247 .. _Pull Request 18248: https://github.com/galaxyproject/galaxy/pull/18248 .. _Pull Request 18249: https://github.com/galaxyproject/galaxy/pull/18249 .. _Pull Request 18250: https://github.com/galaxyproject/galaxy/pull/18250 .. _Pull Request 18251: https://github.com/galaxyproject/galaxy/pull/18251 .. _Pull Request 18252: https://github.com/galaxyproject/galaxy/pull/18252 .. _Pull Request 18255: https://github.com/galaxyproject/galaxy/pull/18255 .. _Pull Request 18263: https://github.com/galaxyproject/galaxy/pull/18263 .. _Pull Request 18267: https://github.com/galaxyproject/galaxy/pull/18267 .. _Pull Request 18270: https://github.com/galaxyproject/galaxy/pull/18270 .. _Pull Request 18273: https://github.com/galaxyproject/galaxy/pull/18273 .. _Pull Request 18274: https://github.com/galaxyproject/galaxy/pull/18274 .. _Pull Request 18278: https://github.com/galaxyproject/galaxy/pull/18278 .. _Pull Request 18283: https://github.com/galaxyproject/galaxy/pull/18283 .. _Pull Request 18284: https://github.com/galaxyproject/galaxy/pull/18284 .. _Pull Request 18286: https://github.com/galaxyproject/galaxy/pull/18286 .. _Pull Request 18289: https://github.com/galaxyproject/galaxy/pull/18289 .. _Pull Request 18291: https://github.com/galaxyproject/galaxy/pull/18291 .. _Pull Request 18294: https://github.com/galaxyproject/galaxy/pull/18294 .. _Pull Request 18296: https://github.com/galaxyproject/galaxy/pull/18296 .. _Pull Request 18299: https://github.com/galaxyproject/galaxy/pull/18299 .. _Pull Request 18301: https://github.com/galaxyproject/galaxy/pull/18301 .. _Pull Request 18303: https://github.com/galaxyproject/galaxy/pull/18303 .. _Pull Request 18305: https://github.com/galaxyproject/galaxy/pull/18305 .. _Pull Request 18306: https://github.com/galaxyproject/galaxy/pull/18306 .. _Pull Request 18307: https://github.com/galaxyproject/galaxy/pull/18307 .. _Pull Request 18308: https://github.com/galaxyproject/galaxy/pull/18308 .. _Pull Request 18309: https://github.com/galaxyproject/galaxy/pull/18309 .. _Pull Request 18310: https://github.com/galaxyproject/galaxy/pull/18310 .. _Pull Request 18311: https://github.com/galaxyproject/galaxy/pull/18311 .. _Pull Request 18313: https://github.com/galaxyproject/galaxy/pull/18313 .. _Pull Request 18314: https://github.com/galaxyproject/galaxy/pull/18314 .. _Pull Request 18315: https://github.com/galaxyproject/galaxy/pull/18315 .. _Pull Request 18324: https://github.com/galaxyproject/galaxy/pull/18324 .. _Pull Request 18325: https://github.com/galaxyproject/galaxy/pull/18325 .. _Pull Request 18329: https://github.com/galaxyproject/galaxy/pull/18329 .. _Pull Request 18330: https://github.com/galaxyproject/galaxy/pull/18330 .. _Pull Request 18333: https://github.com/galaxyproject/galaxy/pull/18333 .. _Pull Request 18338: https://github.com/galaxyproject/galaxy/pull/18338 .. _Pull Request 18339: https://github.com/galaxyproject/galaxy/pull/18339 .. _Pull Request 18342: https://github.com/galaxyproject/galaxy/pull/18342 .. _Pull Request 18343: https://github.com/galaxyproject/galaxy/pull/18343 .. _Pull Request 18344: https://github.com/galaxyproject/galaxy/pull/18344 .. _Pull Request 18348: https://github.com/galaxyproject/galaxy/pull/18348 .. _Pull Request 18352: https://github.com/galaxyproject/galaxy/pull/18352 .. _Pull Request 18353: https://github.com/galaxyproject/galaxy/pull/18353 .. _Pull Request 18358: https://github.com/galaxyproject/galaxy/pull/18358 .. _Pull Request 18364: https://github.com/galaxyproject/galaxy/pull/18364 .. _Pull Request 18365: https://github.com/galaxyproject/galaxy/pull/18365 .. _Pull Request 18370: https://github.com/galaxyproject/galaxy/pull/18370 .. _Pull Request 18372: https://github.com/galaxyproject/galaxy/pull/18372 .. _Pull Request 18374: https://github.com/galaxyproject/galaxy/pull/18374 .. _Pull Request 18376: https://github.com/galaxyproject/galaxy/pull/18376 .. _Pull Request 18377: https://github.com/galaxyproject/galaxy/pull/18377 .. _Pull Request 18378: https://github.com/galaxyproject/galaxy/pull/18378 .. _Pull Request 18379: https://github.com/galaxyproject/galaxy/pull/18379 .. _Pull Request 18381: https://github.com/galaxyproject/galaxy/pull/18381 .. _Pull Request 18385: https://github.com/galaxyproject/galaxy/pull/18385 .. _Pull Request 18387: https://github.com/galaxyproject/galaxy/pull/18387 .. _Pull Request 18388: https://github.com/galaxyproject/galaxy/pull/18388 .. _Pull Request 18389: https://github.com/galaxyproject/galaxy/pull/18389 .. _Pull Request 18390: https://github.com/galaxyproject/galaxy/pull/18390 .. _Pull Request 18393: https://github.com/galaxyproject/galaxy/pull/18393 .. _Pull Request 18395: https://github.com/galaxyproject/galaxy/pull/18395 .. _Pull Request 18396: https://github.com/galaxyproject/galaxy/pull/18396 .. _Pull Request 18400: https://github.com/galaxyproject/galaxy/pull/18400 .. _Pull Request 18402: https://github.com/galaxyproject/galaxy/pull/18402 .. _Pull Request 18403: https://github.com/galaxyproject/galaxy/pull/18403 .. _Pull Request 18405: https://github.com/galaxyproject/galaxy/pull/18405 .. _Pull Request 18410: https://github.com/galaxyproject/galaxy/pull/18410 .. _Pull Request 18411: https://github.com/galaxyproject/galaxy/pull/18411 .. _Pull Request 18416: https://github.com/galaxyproject/galaxy/pull/18416 .. _Pull Request 18418: https://github.com/galaxyproject/galaxy/pull/18418 .. _Pull Request 18420: https://github.com/galaxyproject/galaxy/pull/18420 .. _Pull Request 16645: https://github.com/galaxyproject/galaxy/pull/16645 .. _Pull Request 16730: https://github.com/galaxyproject/galaxy/pull/16730 .. _Pull Request 16983: https://github.com/galaxyproject/galaxy/pull/16983 Loading Loading
doc/source/releases/24.1.rst +249 −0 Original line number Diff line number Diff line Loading @@ -64,8 +64,14 @@ Enhancements `Pull Request 18137`_ .. enhancement_tag_viz * Update parcel-built visualizations to use parcel v2 (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 18311`_ .. enhancement_tag_datatypes * Tighten axt sniffer (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 18204`_ * Better display of estimated line numbers and add number of columns for tabular (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17492`_ Loading @@ -80,11 +86,17 @@ Enhancements `Pull Request 18054`_ .. enhancement_tag_tools * Backport Qiskit Jupyter Notebook update to 24.1 (thanks to `@natefoo <https://github.com/natefoo>`__). `Pull Request 18310`_ * Rename JupyTool to something more searchable (i.e. JupyterLab which includes the substring Jupyter) (thanks to `@hexylena <https://github.com/hexylena>`__). `Pull Request 17849`_ .. enhancement_tag_workflows * Allow running and editing workflows for specific versions (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18378`_ * Update labels in Markdown editor when workflow labels change (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 17863`_ Loading Loading @@ -117,6 +129,27 @@ Enhancements `Pull Request 18046`_ .. enhancement * Backport `#18197 <https://github.com/galaxyproject/galaxy/issues/18197>`__ (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18212`_ * Drop restriction to switch to immutable histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18234`_ * Allow bookmarking public workflows (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18247`_ * More structured indexing for user data objects (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 18291`_ * Display error message if not an image in reports (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18309`_ * Add copy link to published workflow in `WorkflowCard` (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18370`_ * Onedada object store and files source stability fixes (thanks to `@bwalkowi <https://github.com/bwalkowi>`__). `Pull Request 18372`_ * Persistent toggle sections of job info (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 16983`_ Loading Loading @@ -360,11 +393,23 @@ Fixes .. bug_tag_viz * Check various preconditions in FeatureLocationIndexDataProvider (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18283`_ * Adds pinia to manually mounted vue components (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18299`_ * Fix visualizations compatible dataset filtering (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18343`_ * Fix pca 3d rendering of tabular files and visualization error handling in general (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18211`_ .. bug_tag_datatypes * Don't set dataset peek for errored jobs (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18231`_ * Npz sniffing: do not read the whole file (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17672`_ Loading @@ -373,8 +418,23 @@ Fixes `Pull Request 17937`_ .. bug_tag_tools * Raise exception when extracting dataset from collection without datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18249`_ * Fix null inputs in database operation tools (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18385`_ .. bug_tag_workflows * Drop unnecessary escaping for workflow name and annotation (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18376`_ * Fix invocation step_job_summary for new collections (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18402`_ * Fix `input_step_parameters` missing values that don't have a label (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18405`_ * Fixes for mapping workflow labels to markdown dialogs (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 17424`_ Loading Loading @@ -424,6 +484,21 @@ Fixes `Pull Request 18025`_ .. bug_tag_jobs * Restrict job_files access to jobs that are not terminal (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18217`_ * Raise appropriate exception if accessing deleted input file (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18223`_ * Fix seek in slurm memory check (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18338`_ * Do not copy purged outputs to object store (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18342`_ * Kill pulsar job if job stopped on galaxy side (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18348`_ * Always discard session after __handle_waiting_jobs is done (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 17913`_ Loading @@ -448,6 +523,15 @@ Fixes `Pull Request 18190`_ .. bug_tag_admin * Only log error if deleting directory really failed (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18236`_ * Rebuild Galaxy config (thanks to `@bgruening <https://github.com/bgruening>`__). `Pull Request 18325`_ * Downgrade doi fetch error to debug (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18330`_ * Include exception info when something goes wrong while refreshing tokens (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18008`_ Loading @@ -465,6 +549,171 @@ Fixes `Pull Request 18208`_ .. bug * do not expand datasets that are known to be inaccessible (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 17818`_ * Prevent anonymous and inactive users from running workflows (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18192`_ * Revert some requests import changes (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18199`_ * Check dataset state when attempting to acces dataset contents (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18214`_ * Raise ``RequestParameterInvalidException`` if url can't be verified (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18230`_ * Reset content-length for unhandled exceptions (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18233`_ * Fix element serialization for collections that aren't populated yet (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18235`_ * Fix userOwnsHistory conditions (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18243`_ * Small bug fixes for user data plugins (thanks to `@jmchilton <https://github.com/jmchilton>`__). `Pull Request 18246`_ * Transparently open compressed files in DatasetDataProvider (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18248`_ * Skip tests if toolshed, dx.doi not responding (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18250`_ * Fix history export error handling (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18251`_ * Remove linter for unstripped text content for tool xml leaves (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18252`_ * Fix Invenio credentials handling (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18255`_ * Set page importable to false when serializing (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18263`_ * Add missing TS migration (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18267`_ * Format with black (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18273`_ * Fix handler: access to result row items changed in SA2.0 (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18274`_ * Don't attempt to download purged datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18278`_ * Fix first_dataset_element type hint (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18284`_ * Redirect anonymous users to home when importing public histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18286`_ * Use correct link for log in or register in Copy Modal (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18289`_ * Add TS db revision tags for 24.0 (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18294`_ * Move tool shed specific driver function to tool_shed.test (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18296`_ * Fix various packages' issues (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 18301`_ * Fix "label updated" popup triggers too often (thanks to `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`__). `Pull Request 18303`_ * Adapt Tool prediction API to Transformer-based deep learning architecture (thanks to `@anuprulez <https://github.com/anuprulez>`__). `Pull Request 18305`_ * Fix word bleeding in modals, sharing page and history rename (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18306`_ * Don't serialize display application links for deleted datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18307`_ * Fix non-history items drag&drop into histories (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18308`_ * Filter data dialog entries by dataset state, only display `ok` state (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18313`_ * Fix pinia in manually mounted components (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18315`_ * Disable state filter for collections in `HistoryFilters` (thanks to `@ahmedhamidawan <https://github.com/ahmedhamidawan>`__). `Pull Request 18324`_ * Fix users API serialization when listing users (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18329`_ * Fix authentication error for anonymous users querying jobs (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18333`_ * Make sure that all Linter subclasses are imported for listing them (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18339`_ * Fix anonymous user job retrieval logic (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18358`_ * Fix check for anonymous (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18364`_ * Fix update group API payload model (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18374`_ * Sanitize FormElement error messages (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18377`_ * Fix empty usernames in database + bug in username generation (thanks to `@jdavcs <https://github.com/jdavcs>`__). `Pull Request 18379`_ * Fix user's private role can be missing (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18381`_ * Fix duplicated requests when browsing files sources with pagination (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18387`_ * Fix dataset details polling re-render (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18388`_ * Assign default ``data`` extension on discovered collection output (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18389`_ * Fix workflow editor tool form scroll memory (thanks to `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`__). `Pull Request 18390`_ * Reset current page when browsing sub-folders in FilesSources (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18395`_ * Fix workflow tags initialisation in workflow editor (thanks to `@itisAliRH <https://github.com/itisAliRH>`__). `Pull Request 18396`_ * Fix ``get_accessible_job`` if called without session (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18400`_ * Allow in_range validator for selects (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18403`_ * Ensure datatypes match on dragging elements into FormData (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18410`_ * Really allow in-range validator for txt (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 18411`_ * Fix collection map over status for dragged collections (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18416`_ * Add TypedDict for JobsSummary (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18418`_ * Serialize purged flag for datasets in collections (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18420`_ * Unpin social-auth-core dependency (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 17607`_ Loading
doc/source/releases/24.1_announce_user.rst +28 −1 Original line number Diff line number Diff line Loading @@ -96,6 +96,18 @@ Visualizations =========================================================== .. visualizations * Check various preconditions in FeatureLocationIndexDataProvider (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18283`_ * Add pinia to manually mounted vue components (thanks to `@guerler <https://github.com/guerler>`__). `Pull Request 18299`_ * Update parcel-built visualizations to use parcel v2 (thanks to `@dannon <https://github.com/dannon>`__). `Pull Request 18311`_ * Fix visualizations compatible dataset filtering (thanks to `@davelopez <https://github.com/davelopez>`__). `Pull Request 18343`_ * Fix pca 3d rendering of tabular files and visualization error handling in general (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18211`_ Loading @@ -104,10 +116,16 @@ Datatypes =========================================================== .. datatypes * Tighten axt sniffer (thanks to `@martenson <https://github.com/martenson>`__). `Pull Request 18204`_ * Don't set dataset peek for errored jobs (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18231`_ * Better display of estimated line numbers and add number of columns for tabular (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__). `Pull Request 17492`_ * add colabfold tar file datatype * Add colabfold tar file datatype (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__). `Pull Request 17567`_ * Set minimal metadata also for empty bed datasets Loading Loading @@ -142,6 +160,15 @@ Builtin Tool Updates =========================================================== .. tools * Raise exception when extracting dataset from collection without datasets (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18249`_ * Backport Qiskit Jupyter Notebook update to 24.1 (thanks to `@natefoo <https://github.com/natefoo>`__). `Pull Request 18310`_ * Fix null inputs in database operation tools (thanks to `@mvdbeek <https://github.com/mvdbeek>`__). `Pull Request 18385`_ * Code cleanups from ruff and pyupgrade (thanks to `@nsoranzo <https://github.com/nsoranzo>`__). `Pull Request 17654`_ Loading
doc/source/releases/24.1_prs.rst +92 −0 Original line number Diff line number Diff line .. github_links .. _Pull Request 17818: https://github.com/galaxyproject/galaxy/pull/17818 .. _Pull Request 18192: https://github.com/galaxyproject/galaxy/pull/18192 .. _Pull Request 18199: https://github.com/galaxyproject/galaxy/pull/18199 .. _Pull Request 18204: https://github.com/galaxyproject/galaxy/pull/18204 .. _Pull Request 18212: https://github.com/galaxyproject/galaxy/pull/18212 .. _Pull Request 18214: https://github.com/galaxyproject/galaxy/pull/18214 .. _Pull Request 18217: https://github.com/galaxyproject/galaxy/pull/18217 .. _Pull Request 18223: https://github.com/galaxyproject/galaxy/pull/18223 .. _Pull Request 18230: https://github.com/galaxyproject/galaxy/pull/18230 .. _Pull Request 18231: https://github.com/galaxyproject/galaxy/pull/18231 .. _Pull Request 18233: https://github.com/galaxyproject/galaxy/pull/18233 .. _Pull Request 18234: https://github.com/galaxyproject/galaxy/pull/18234 .. _Pull Request 18235: https://github.com/galaxyproject/galaxy/pull/18235 .. _Pull Request 18236: https://github.com/galaxyproject/galaxy/pull/18236 .. _Pull Request 18239: https://github.com/galaxyproject/galaxy/pull/18239 .. _Pull Request 18243: https://github.com/galaxyproject/galaxy/pull/18243 .. _Pull Request 18244: https://github.com/galaxyproject/galaxy/pull/18244 .. _Pull Request 18246: https://github.com/galaxyproject/galaxy/pull/18246 .. _Pull Request 18247: https://github.com/galaxyproject/galaxy/pull/18247 .. _Pull Request 18248: https://github.com/galaxyproject/galaxy/pull/18248 .. _Pull Request 18249: https://github.com/galaxyproject/galaxy/pull/18249 .. _Pull Request 18250: https://github.com/galaxyproject/galaxy/pull/18250 .. _Pull Request 18251: https://github.com/galaxyproject/galaxy/pull/18251 .. _Pull Request 18252: https://github.com/galaxyproject/galaxy/pull/18252 .. _Pull Request 18255: https://github.com/galaxyproject/galaxy/pull/18255 .. _Pull Request 18263: https://github.com/galaxyproject/galaxy/pull/18263 .. _Pull Request 18267: https://github.com/galaxyproject/galaxy/pull/18267 .. _Pull Request 18270: https://github.com/galaxyproject/galaxy/pull/18270 .. _Pull Request 18273: https://github.com/galaxyproject/galaxy/pull/18273 .. _Pull Request 18274: https://github.com/galaxyproject/galaxy/pull/18274 .. _Pull Request 18278: https://github.com/galaxyproject/galaxy/pull/18278 .. _Pull Request 18283: https://github.com/galaxyproject/galaxy/pull/18283 .. _Pull Request 18284: https://github.com/galaxyproject/galaxy/pull/18284 .. _Pull Request 18286: https://github.com/galaxyproject/galaxy/pull/18286 .. _Pull Request 18289: https://github.com/galaxyproject/galaxy/pull/18289 .. _Pull Request 18291: https://github.com/galaxyproject/galaxy/pull/18291 .. _Pull Request 18294: https://github.com/galaxyproject/galaxy/pull/18294 .. _Pull Request 18296: https://github.com/galaxyproject/galaxy/pull/18296 .. _Pull Request 18299: https://github.com/galaxyproject/galaxy/pull/18299 .. _Pull Request 18301: https://github.com/galaxyproject/galaxy/pull/18301 .. _Pull Request 18303: https://github.com/galaxyproject/galaxy/pull/18303 .. _Pull Request 18305: https://github.com/galaxyproject/galaxy/pull/18305 .. _Pull Request 18306: https://github.com/galaxyproject/galaxy/pull/18306 .. _Pull Request 18307: https://github.com/galaxyproject/galaxy/pull/18307 .. _Pull Request 18308: https://github.com/galaxyproject/galaxy/pull/18308 .. _Pull Request 18309: https://github.com/galaxyproject/galaxy/pull/18309 .. _Pull Request 18310: https://github.com/galaxyproject/galaxy/pull/18310 .. _Pull Request 18311: https://github.com/galaxyproject/galaxy/pull/18311 .. _Pull Request 18313: https://github.com/galaxyproject/galaxy/pull/18313 .. _Pull Request 18314: https://github.com/galaxyproject/galaxy/pull/18314 .. _Pull Request 18315: https://github.com/galaxyproject/galaxy/pull/18315 .. _Pull Request 18324: https://github.com/galaxyproject/galaxy/pull/18324 .. _Pull Request 18325: https://github.com/galaxyproject/galaxy/pull/18325 .. _Pull Request 18329: https://github.com/galaxyproject/galaxy/pull/18329 .. _Pull Request 18330: https://github.com/galaxyproject/galaxy/pull/18330 .. _Pull Request 18333: https://github.com/galaxyproject/galaxy/pull/18333 .. _Pull Request 18338: https://github.com/galaxyproject/galaxy/pull/18338 .. _Pull Request 18339: https://github.com/galaxyproject/galaxy/pull/18339 .. _Pull Request 18342: https://github.com/galaxyproject/galaxy/pull/18342 .. _Pull Request 18343: https://github.com/galaxyproject/galaxy/pull/18343 .. _Pull Request 18344: https://github.com/galaxyproject/galaxy/pull/18344 .. _Pull Request 18348: https://github.com/galaxyproject/galaxy/pull/18348 .. _Pull Request 18352: https://github.com/galaxyproject/galaxy/pull/18352 .. _Pull Request 18353: https://github.com/galaxyproject/galaxy/pull/18353 .. _Pull Request 18358: https://github.com/galaxyproject/galaxy/pull/18358 .. _Pull Request 18364: https://github.com/galaxyproject/galaxy/pull/18364 .. _Pull Request 18365: https://github.com/galaxyproject/galaxy/pull/18365 .. _Pull Request 18370: https://github.com/galaxyproject/galaxy/pull/18370 .. _Pull Request 18372: https://github.com/galaxyproject/galaxy/pull/18372 .. _Pull Request 18374: https://github.com/galaxyproject/galaxy/pull/18374 .. _Pull Request 18376: https://github.com/galaxyproject/galaxy/pull/18376 .. _Pull Request 18377: https://github.com/galaxyproject/galaxy/pull/18377 .. _Pull Request 18378: https://github.com/galaxyproject/galaxy/pull/18378 .. _Pull Request 18379: https://github.com/galaxyproject/galaxy/pull/18379 .. _Pull Request 18381: https://github.com/galaxyproject/galaxy/pull/18381 .. _Pull Request 18385: https://github.com/galaxyproject/galaxy/pull/18385 .. _Pull Request 18387: https://github.com/galaxyproject/galaxy/pull/18387 .. _Pull Request 18388: https://github.com/galaxyproject/galaxy/pull/18388 .. _Pull Request 18389: https://github.com/galaxyproject/galaxy/pull/18389 .. _Pull Request 18390: https://github.com/galaxyproject/galaxy/pull/18390 .. _Pull Request 18393: https://github.com/galaxyproject/galaxy/pull/18393 .. _Pull Request 18395: https://github.com/galaxyproject/galaxy/pull/18395 .. _Pull Request 18396: https://github.com/galaxyproject/galaxy/pull/18396 .. _Pull Request 18400: https://github.com/galaxyproject/galaxy/pull/18400 .. _Pull Request 18402: https://github.com/galaxyproject/galaxy/pull/18402 .. _Pull Request 18403: https://github.com/galaxyproject/galaxy/pull/18403 .. _Pull Request 18405: https://github.com/galaxyproject/galaxy/pull/18405 .. _Pull Request 18410: https://github.com/galaxyproject/galaxy/pull/18410 .. _Pull Request 18411: https://github.com/galaxyproject/galaxy/pull/18411 .. _Pull Request 18416: https://github.com/galaxyproject/galaxy/pull/18416 .. _Pull Request 18418: https://github.com/galaxyproject/galaxy/pull/18418 .. _Pull Request 18420: https://github.com/galaxyproject/galaxy/pull/18420 .. _Pull Request 16645: https://github.com/galaxyproject/galaxy/pull/16645 .. _Pull Request 16730: https://github.com/galaxyproject/galaxy/pull/16730 .. _Pull Request 16983: https://github.com/galaxyproject/galaxy/pull/16983 Loading
