Unverified Commit f6d4f899 authored by mvdbeek's avatar mvdbeek
Browse files

Update release notes for latest PRs

parent c120c54d

doc/source/releases/22.01.rst

+61 −0
Original line number Diff line number Diff line
@@ -112,6 +112,9 @@ Enhancements 
  `Pull Request 13271`_

* Limit required element validation to safe elements

  `Pull Request 13299`_

* Add phyloseq datatype

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13462`_

.. enhancement_tag_tools



* Allow any format in export tool
@@ -161,6 +164,12 @@ Enhancements 
  `Pull Request 13215`_

* Add config variable for setting tus upload directory

  `Pull Request 13313`_

* Document gunicorn and nginx

  `Pull Request 13436`_

* Update interactive tool docs for Gunicorn / dropping uWSGI

  `Pull Request 13470`_

* Add Migrating from uWSGI to Gunicorn and FastAPI document

  `Pull Request 13480`_

.. enhancement



* Separated data PVC
@@ -406,6 +415,21 @@ Enhancements 
* Only create HDAH entries for undeleted HDAs

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13309`_

* Add version.json for exposing extra api information about docker container

  (thanks to `@nuwang <https://github.com/nuwang>`__).

  `Pull Request 13433`_

* Document gunicorn and apache

  `Pull Request 13439`_

* Update jobs and cluster documentation

  `Pull Request 13440`_

* Update performance tracking for Gunicorn

  `Pull Request 13441`_

* Drop interactive environment build instructions from docs

  `Pull Request 13442`_

* Create config package, move app-related functionality to app

  `Pull Request 13461`_

* Pin gravity to 0.10.0

  `Pull Request 13483`_

.. small_enhancement



* FastAPI: Histories API migration
@@ -563,6 +587,8 @@ Enhancements 
  `Pull Request 13228`_

* Replace custom tour ids in forms with regular DOM identifiers

  `Pull Request 13252`_

* Drop pkg_resources

  `Pull Request 13454`_





Fixes
@@ -576,6 +602,8 @@ Fixes 
* Large peptide IDs

  (thanks to `@reid-wagner <https://github.com/reid-wagner>`__).

  `Pull Request 13261`_

* Try to unit test more of DictParser in Viz component.

  `Pull Request 13385`_

.. bug_tag_datatypes



* Allow trailing semicolon in last column of gff3
@@ -613,6 +641,11 @@ Fixes 
* FormNumber: notify value change on slider change

  (thanks to `@davelopez <https://github.com/davelopez>`__).

  `Pull Request 13260`_

* Always display digest in name for refgenie assets.

  `Pull Request 13403`_

* Fix `UnboundLocalError` in sort collection tool

  (thanks to `@davelopez <https://github.com/davelopez>`__).

  `Pull Request 13429`_

.. bug_tag_workflows



* Misc fixes - round 2
@@ -692,6 +725,8 @@ Fixes 
  `Pull Request 13281`_

* Restore Metadata size limit

  `Pull Request 13315`_

* Drop uWSGI from scaling documentation

  `Pull Request 13381`_

.. bug



* Reimplement collection order test, add wrong order, add `expect_test_failure` attribute
@@ -935,6 +970,32 @@ Fixes 
  `Pull Request 13322`_

* Fix toolbox handling of spaces in old tools

  `Pull Request 13347`_

* Fix macro parsing

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13373`_

* Clarify that history exports are not kept forever

  `Pull Request 13389`_

* Fix history search help popover not closing on click outside

  (thanks to `@davelopez <https://github.com/davelopez>`__).

  `Pull Request 13390`_

* Ensure $GRAVITY_STATE_DIR is present in venv activate script any time run.sh/common_startup.sh is called normally

  `Pull Request 13392`_

* Use a2wsgi to serve WSGI app

  `Pull Request 13396`_

* Dataset annotations are optional and should not be required

  `Pull Request 13420`_

* Fix repository uploads with remove_repo_files_not_in_tar

  `Pull Request 13425`_

* Wrap reports app in static, fix tool shed entry point

  `Pull Request 13430`_

* Initial fix for quay.io repo query issue

  `Pull Request 13468`_

* Add profile version to ethercalc

  `Pull Request 13469`_

* Backport and fix webapps tests

  `Pull Request 13478`_

* Use timeout instead of interval when polling, optionally terminate polling

  `Pull Request 13485`_



.. include:: 22.01_prs.rst

doc/source/releases/22.01_announce_user.rst

+3 −0
Original line number Diff line number Diff line
@@ -83,6 +83,9 @@ New Datatypes 
* Add gz as datatype

  (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).

  `Pull Request 13271`_

* Add phyloseq datatype

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13462`_



Builtin Tool Updates

===========================================================

doc/source/releases/22.01_prs.rst

+34 −0
Original line number Diff line number Diff line
@@ -359,6 +359,7 @@ 
.. _Pull Request 13268: https://github.com/galaxyproject/galaxy/pull/13268

.. _Pull Request 13271: https://github.com/galaxyproject/galaxy/pull/13271

.. _Pull Request 13273: https://github.com/galaxyproject/galaxy/pull/13273

.. _Pull Request 13275: https://github.com/galaxyproject/galaxy/pull/13275

.. _Pull Request 13278: https://github.com/galaxyproject/galaxy/pull/13278

.. _Pull Request 13281: https://github.com/galaxyproject/galaxy/pull/13281

.. _Pull Request 13285: https://github.com/galaxyproject/galaxy/pull/13285
@@ -381,3 +382,36 @@ 
.. _Pull Request 13343: https://github.com/galaxyproject/galaxy/pull/13343

.. _Pull Request 13347: https://github.com/galaxyproject/galaxy/pull/13347

.. _Pull Request 13363: https://github.com/galaxyproject/galaxy/pull/13363

.. _Pull Request 13373: https://github.com/galaxyproject/galaxy/pull/13373

.. _Pull Request 13381: https://github.com/galaxyproject/galaxy/pull/13381

.. _Pull Request 13385: https://github.com/galaxyproject/galaxy/pull/13385

.. _Pull Request 13389: https://github.com/galaxyproject/galaxy/pull/13389

.. _Pull Request 13390: https://github.com/galaxyproject/galaxy/pull/13390

.. _Pull Request 13392: https://github.com/galaxyproject/galaxy/pull/13392

.. _Pull Request 13396: https://github.com/galaxyproject/galaxy/pull/13396

.. _Pull Request 13403: https://github.com/galaxyproject/galaxy/pull/13403

.. _Pull Request 13407: https://github.com/galaxyproject/galaxy/pull/13407

.. _Pull Request 13417: https://github.com/galaxyproject/galaxy/pull/13417

.. _Pull Request 13420: https://github.com/galaxyproject/galaxy/pull/13420

.. _Pull Request 13425: https://github.com/galaxyproject/galaxy/pull/13425

.. _Pull Request 13429: https://github.com/galaxyproject/galaxy/pull/13429

.. _Pull Request 13430: https://github.com/galaxyproject/galaxy/pull/13430

.. _Pull Request 13432: https://github.com/galaxyproject/galaxy/pull/13432

.. _Pull Request 13433: https://github.com/galaxyproject/galaxy/pull/13433

.. _Pull Request 13436: https://github.com/galaxyproject/galaxy/pull/13436

.. _Pull Request 13439: https://github.com/galaxyproject/galaxy/pull/13439

.. _Pull Request 13440: https://github.com/galaxyproject/galaxy/pull/13440

.. _Pull Request 13441: https://github.com/galaxyproject/galaxy/pull/13441

.. _Pull Request 13442: https://github.com/galaxyproject/galaxy/pull/13442

.. _Pull Request 13454: https://github.com/galaxyproject/galaxy/pull/13454

.. _Pull Request 13461: https://github.com/galaxyproject/galaxy/pull/13461

.. _Pull Request 13462: https://github.com/galaxyproject/galaxy/pull/13462

.. _Pull Request 13468: https://github.com/galaxyproject/galaxy/pull/13468

.. _Pull Request 13469: https://github.com/galaxyproject/galaxy/pull/13469

.. _Pull Request 13470: https://github.com/galaxyproject/galaxy/pull/13470

.. _Pull Request 13474: https://github.com/galaxyproject/galaxy/pull/13474

.. _Pull Request 13478: https://github.com/galaxyproject/galaxy/pull/13478

.. _Pull Request 13480: https://github.com/galaxyproject/galaxy/pull/13480

.. _Pull Request 13483: https://github.com/galaxyproject/galaxy/pull/13483

.. _Pull Request 13484: https://github.com/galaxyproject/galaxy/pull/13484

.. _Pull Request 13485: https://github.com/galaxyproject/galaxy/pull/13485