Unverified Commit f487d804 authored by mvdbeek's avatar mvdbeek
Browse files

Fix extra_files_path handling on pulsar without outputs_to_working_directory

parent 356d33b7

lib/galaxy/metadata/set_metadata.py

+6 −0
Original line number Diff line number Diff line
@@ -407,6 +407,12 @@ def set_metadata_portable( 
                    files_path = os.path.abspath(

                        os.path.join(tool_job_working_directory, "working", extra_files_dir_name)

                    )

                    if not os.path.exists(files_path):

                        pulsar_extra_files_path = os.path.join(

                            tool_job_working_directory, "outputs", extra_files_dir_name

                        )

                        if os.path.exists(pulsar_extra_files_path):

                            files_path = pulsar_extra_files_path

                    dataset.dataset.external_extra_files_path = files_path

            file_dict = tool_provided_metadata.get_dataset_meta(output_name, dataset.dataset.id, dataset.dataset.uuid)

            if "ext" in file_dict: