Loading lib/galaxy/config/schemas/config_schema.yml +1 −0 Original line number Diff line number Diff line Loading @@ -2903,6 +2903,7 @@ mapping: type: str default: default required: false per_host: true desc: | Default tool panel view for the current Galaxy configuration. This should refer to an id of a panel view defined using the panel_views or panel_views_dir configuration options or an Loading lib/galaxy/tool_util/toolbox/base.py +6 −3 Original line number Diff line number Diff line Loading @@ -156,7 +156,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): Create a toolbox from the config files named by `config_filenames`, using `tool_root_dir` as the base directory for finding individual tool config files. """ self._default_panel_view = default_panel_view self.__default_panel_view = default_panel_view # The _dynamic_tool_confs list contains dictionaries storing # information about the tools defined in each shed-related # shed_tool_conf.xml file. Loading Loading @@ -238,6 +238,9 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): if save_integrated_tool_panel: self._save_integrated_tool_panel() def _default_panel_view(self, trans): return self.app.config.config_value_for_host("default_panel_view", trans.host) or self.__default_panel_view def create_tool(self, config_file, tool_shed_repository=None, guid=None, **kwds): raise NotImplementedError() Loading Loading @@ -1275,7 +1278,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): def tool_panel_contents(self, trans, view=None, **kwds): """Filter tool_panel contents for displaying for user.""" if view is None: view = self._default_panel_view view = self._default_panel_view(trans) if view not in self._tool_panel_view_rendered: raise RequestParameterInvalidException(f"No panel view {view} found.") filter_method = self._build_filter_method(trans) Loading Loading @@ -1338,7 +1341,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): {section_id: { section but with .tools=List[all tool ids] }, ...}} """ if view == "default_panel_view": view = self._default_panel_view view = self._default_panel_view(trans) view_contents: Dict[str, Dict] = {} panel_elts = self.tool_panel_contents(trans, view=view, **kwds) for elt in panel_elts: Loading lib/galaxy/webapps/galaxy/api/tools.py +1 −1 Original line number Diff line number Diff line Loading @@ -185,7 +185,7 @@ class ToolsController(BaseGalaxyAPIController, UsesVisualizationMixin): """ rval = {} rval["default_panel_view"] = self.app.toolbox._default_panel_view rval["default_panel_view"] = self.app.toolbox._default_panel_view(trans) rval["views"] = self.app.toolbox.panel_view_dicts() return rval Loading Loading
lib/galaxy/config/schemas/config_schema.yml +1 −0 Original line number Diff line number Diff line Loading @@ -2903,6 +2903,7 @@ mapping: type: str default: default required: false per_host: true desc: | Default tool panel view for the current Galaxy configuration. This should refer to an id of a panel view defined using the panel_views or panel_views_dir configuration options or an Loading
lib/galaxy/tool_util/toolbox/base.py +6 −3 Original line number Diff line number Diff line Loading @@ -156,7 +156,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): Create a toolbox from the config files named by `config_filenames`, using `tool_root_dir` as the base directory for finding individual tool config files. """ self._default_panel_view = default_panel_view self.__default_panel_view = default_panel_view # The _dynamic_tool_confs list contains dictionaries storing # information about the tools defined in each shed-related # shed_tool_conf.xml file. Loading Loading @@ -238,6 +238,9 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): if save_integrated_tool_panel: self._save_integrated_tool_panel() def _default_panel_view(self, trans): return self.app.config.config_value_for_host("default_panel_view", trans.host) or self.__default_panel_view def create_tool(self, config_file, tool_shed_repository=None, guid=None, **kwds): raise NotImplementedError() Loading Loading @@ -1275,7 +1278,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): def tool_panel_contents(self, trans, view=None, **kwds): """Filter tool_panel contents for displaying for user.""" if view is None: view = self._default_panel_view view = self._default_panel_view(trans) if view not in self._tool_panel_view_rendered: raise RequestParameterInvalidException(f"No panel view {view} found.") filter_method = self._build_filter_method(trans) Loading Loading @@ -1338,7 +1341,7 @@ class AbstractToolBox(Dictifiable, ManagesIntegratedToolPanelMixin): {section_id: { section but with .tools=List[all tool ids] }, ...}} """ if view == "default_panel_view": view = self._default_panel_view view = self._default_panel_view(trans) view_contents: Dict[str, Dict] = {} panel_elts = self.tool_panel_contents(trans, view=view, **kwds) for elt in panel_elts: Loading
lib/galaxy/webapps/galaxy/api/tools.py +1 −1 Original line number Diff line number Diff line Loading @@ -185,7 +185,7 @@ class ToolsController(BaseGalaxyAPIController, UsesVisualizationMixin): """ rval = {} rval["default_panel_view"] = self.app.toolbox._default_panel_view rval["default_panel_view"] = self.app.toolbox._default_panel_view(trans) rval["views"] = self.app.toolbox.panel_view_dicts() return rval Loading