Commit f24331d2 authored by Matthias Bernt's avatar Matthias Bernt
Browse files

fix edta metadata setting 

fix for:

```
UnboundLocalError: local variable 'tpe' referenced before assignment
```

was discovered in the tests running here: https://github.com/galaxyproject/galaxy/pull/11043
parent 252ec1aa

lib/galaxy/datatypes/proteomics.py

+2 −1
Original line number Diff line number Diff line
@@ -526,6 +526,7 @@ class Edta(TabularData): 
    def set_meta(self, dataset, **kwd):

        data_lines = 0

        delim = None

        tpe = None

        if dataset.has_data():

            with open(dataset.file_name) as dtafile:

                for idx, line in enumerate(dtafile):
@@ -550,7 +551,7 @@ class Edta(TabularData): 
        dataset.metadata.data_lines = data_lines

        dataset.metadata.comment_lines = 0

        dataset.metadata.columns = len(dataset.metadata.column_names)

        if tpe > 0:

        if tpe in not None and tpe > 0:

            dataset.metadata.comment_lines += 1

            dataset.metadata.data_lines -= 1