Unverified Commit ce0f385a authored by galaxybot's avatar galaxybot Committed by Nicola Soranzo
Browse files

Update Python dependencies 

by running `make update-dependencies`.
parent 829c7459

lib/galaxy/dependencies/dev-requirements.txt

+6 −5
Original line number Diff line number Diff line 
# This file was autogenerated by uv via the following command:

#    uv export --frozen --no-hashes --only-group=dev

aiohappyeyeballs==2.4.4

aiohappyeyeballs==2.4.4 ; python_full_version < '3.9'

aiohappyeyeballs==2.4.6 ; python_full_version >= '3.9'

aiohttp==3.10.11 ; python_full_version < '3.9'

aiohttp==3.11.11 ; python_full_version >= '3.9'

aiohttp==3.11.12 ; python_full_version >= '3.9'

aiosignal==1.3.1 ; python_full_version < '3.9'

aiosignal==1.3.2 ; python_full_version >= '3.9'

alabaster==0.7.13 ; python_full_version < '3.9'
@@ -50,7 +51,7 @@ exceptiongroup==1.2.2 ; python_full_version < '3.11' 
filelock==3.16.1 ; python_full_version < '3.9'

filelock==3.17.0 ; python_full_version >= '3.9'

fluent-logger==0.11.1

fonttools==4.55.8

fonttools==4.56.0

frozenlist==1.5.0

galaxy-release-util==0.2.0

graylint==1.1.1
@@ -95,7 +96,7 @@ matplotlib==3.10.0 ; python_full_version >= '3.10' 
mdit-py-plugins==0.4.2

mdurl==0.1.2

mirakuru==2.5.2 ; python_full_version < '3.9'

mirakuru==2.5.3 ; python_full_version >= '3.9'

mirakuru==2.6.0 ; python_full_version >= '3.9'

mistune==3.0.2

more-itertools==10.5.0 ; python_full_version < '3.9' and platform_machine != 'ppc64le' and platform_machine != 's390x'

more-itertools==10.6.0 ; python_full_version >= '3.9' and platform_machine != 'ppc64le' and platform_machine != 's390x'
@@ -112,7 +113,7 @@ onedatafilerestclient==21.2.5.2 
outcome==1.3.0.post0

packaging==24.2

pathspec==0.12.1

pbr==6.1.0 ; python_full_version >= '3.9'

pbr==6.1.1 ; python_full_version >= '3.9'

pillow==10.4.0 ; python_full_version < '3.9'

pillow==11.1.0 ; python_full_version >= '3.9'

pkce==1.0.3

lib/galaxy/dependencies/pinned-lint-requirements.txt

+1 −1
Original line number Diff line number Diff line
@@ -4,4 +4,4 @@ flake8-bugbear==24.12.12 
mccabe==0.7.0

pycodestyle==2.12.1

pyflakes==3.2.0

ruff==0.9.4
 
ruff==0.9.5

lib/galaxy/dependencies/pinned-requirements.txt

+7 −6
Original line number Diff line number Diff line
@@ -5,9 +5,10 @@ adal==1.2.7 
aiobotocore==2.19.0

aiodataloader==0.4.0

aiofiles==24.1.0

aiohappyeyeballs==2.4.4

aiohappyeyeballs==2.4.4 ; python_full_version < '3.9'

aiohappyeyeballs==2.4.6 ; python_full_version >= '3.9'

aiohttp==3.10.11 ; python_full_version < '3.9'

aiohttp==3.11.11 ; python_full_version >= '3.9'

aiohttp==3.11.12 ; python_full_version >= '3.9'

aioitertools==0.12.0

aiosignal==1.3.1 ; python_full_version < '3.9'

aiosignal==1.3.2 ; python_full_version >= '3.9'
@@ -116,7 +117,7 @@ kombu==5.4.2 
lagom==2.7.5

legacy-cgi==2.6.2 ; python_full_version >= '3.13'

lxml==5.3.0

mako==1.3.8

mako==1.3.9

markdown==3.7

markdown-it-py==3.0.0

markupsafe==2.1.5 ; python_full_version < '3.9'
@@ -140,7 +141,7 @@ oauthlib==3.2.2 
orjson==3.10.15

oyaml==1.0

packaging==24.2

paramiko==3.5.0

paramiko==3.5.1

parsley==1.3

paste==3.10.1

pastedeploy==3.1.0
@@ -172,7 +173,7 @@ pynacl==1.5.0 
pyparsing==3.1.4 ; python_full_version < '3.9'

pyparsing==3.2.1 ; python_full_version >= '3.9'

pyreadline3==3.5.4 ; sys_platform == 'win32'

pysam==0.22.1

pysam==0.23.0

python-dateutil==2.9.0.post0

python-magic==0.4.27

python-multipart==0.0.20
@@ -215,7 +216,7 @@ sniffio==1.3.1 
social-auth-core==4.5.4

sortedcontainers==2.4.0

spython==0.3.14

sqlalchemy==2.0.37

sqlalchemy==2.0.38

sqlitedict==2.1.0

sqlparse==0.5.3

starlette==0.44.0 ; python_full_version < '3.9'

lib/galaxy/dependencies/pinned-typecheck-requirements.txt

+5 −4
Original line number Diff line number Diff line 
# This file was autogenerated by uv via the following command:

#    uv export --frozen --no-hashes --only-group=typecheck

annotated-types==0.7.0

boto3-stubs==1.36.12

botocore-stubs==1.36.12

boto3-stubs==1.36.16

botocore-stubs==1.36.16

cffi==1.17.1 ; platform_python_implementation != 'PyPy'

cryptography==44.0.0

lxml-stubs==0.5.1

mypy==1.14.1

mypy-boto3-s3==1.36.9

mypy==1.14.1 ; python_full_version < '3.9'

mypy==1.15.0 ; python_full_version >= '3.9'

mypy-boto3-s3==1.36.15

mypy-extensions==1.0.0

pycparser==2.22 ; platform_python_implementation != 'PyPy'

pydantic==2.10.6