Unverified Commit ca0a0219 authored by John Chilton's avatar John Chilton Committed by GitHub
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Merge pull request #20992 from mvdbeek/fix_comp1 

Fix comp1 / test_subworkflow_map_over_data_column
parents a4e47327 003cf643

tools/filters/compare.xml

+2 −1
Original line number Diff line number Diff line
@@ -2,13 +2,14 @@ 
  <description>to find common or distinct rows</description>

  <requirements>

    <requirement type="package" version="8.31">coreutils</requirement>

    <requirement type="package" version="5.3.1">gawk</requirement>

  </requirements>

  <command><![CDATA[

    join --nocheck-order -t \$'\t'

      #if $mode == "V":

        -v 1

      #end if

      -o "\$(seq -s, -f '1.%g' 1 \$(head -n1 '$input1' | tr '\t' '\n' | wc -l))"

      -o "\$(seq -s, -f '1.%g' 1 \$(head -n1 '$input1' | awk -F'\t' '{print NF}'))"

      -1 '$field1' -2 '$field2'

      <(sort -t \$'\t' -k '${field1},${field1}' '$input1')

      <(sort -t \$'\t' -k '${field2},${field2}' '$input2')