Use content_id if upgrades allowed

                "annotation": annotation_str,

            }

            if step.type == "tool":

                step_dict["tool_id"] = step.tool_id

                step_dict["tool_id"] = content_id if allow_upgrade else step.tool_id

            # Add tool shed repository information and post-job actions to step dict.

            if module.type == "tool":

                if module.tool and module.tool.tool_shed: