Commit c1934993 authored by John Davis's avatar John Davis
Browse files

Merge branch 'release_24.2' into dev 

# Conflicts:
#	lib/galaxy/version.py
#	packages/app/HISTORY.rst
#	packages/auth/HISTORY.rst
#	packages/config/HISTORY.rst
#	packages/data/HISTORY.rst
#	packages/files/HISTORY.rst
#	packages/job_execution/HISTORY.rst
#	packages/job_metrics/HISTORY.rst
#	packages/navigation/HISTORY.rst
#	packages/objectstore/HISTORY.rst
#	packages/schema/HISTORY.rst
#	packages/selenium/HISTORY.rst
#	packages/test_api/HISTORY.rst
#	packages/test_base/HISTORY.rst
#	packages/test_driver/HISTORY.rst
#	packages/tool_shed/HISTORY.rst
#	packages/tool_util/HISTORY.rst
#	packages/tours/HISTORY.rst
#	packages/util/HISTORY.rst
#	packages/web_apps/HISTORY.rst
#	packages/web_framework/HISTORY.rst
#	packages/web_stack/HISTORY.rst
parents a14e006f e3b17952

packages/app/HISTORY.rst

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-------------------

24.2.0 (2025-02-06)

-------------------





=========

Bug fixes

=========



* Drop "Send to cloud" tool and associated cloudauthz code by `@jdavcs <https://github.com/jdavcs>`_ in `#18196 <https://github.com/galaxyproject/galaxy/pull/18196>`_

* Dynamics options add library dataset by `@gagayuan <https://github.com/gagayuan>`_ in `#18198 <https://github.com/galaxyproject/galaxy/pull/18198>`_

* Fix some deprecations by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18433 <https://github.com/galaxyproject/galaxy/pull/18433>`_

* Fixes for errors reported by mypy 1.11.0 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18608 <https://github.com/galaxyproject/galaxy/pull/18608>`_

* Update mercurial by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18686 <https://github.com/galaxyproject/galaxy/pull/18686>`_

* Replace types-pkg-resources with types-setuptools by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18708 <https://github.com/galaxyproject/galaxy/pull/18708>`_

* Fix tag processing in library upload by `@davelopez <https://github.com/davelopez>`_ in `#18714 <https://github.com/galaxyproject/galaxy/pull/18714>`_

* Update ruff to 0.6.1 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18716 <https://github.com/galaxyproject/galaxy/pull/18716>`_

* Fix new flake8-bugbear B039 and mypy type-var errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18755 <https://github.com/galaxyproject/galaxy/pull/18755>`_

* Fixes and tests for data fetch models. by `@jmchilton <https://github.com/jmchilton>`_ in `#18834 <https://github.com/galaxyproject/galaxy/pull/18834>`_

* data_column params: offer same columns with and without use_header_names by `@wm75 <https://github.com/wm75>`_ in `#18879 <https://github.com/galaxyproject/galaxy/pull/18879>`_

* Fix issue with generating slug for sharing by `@arash77 <https://github.com/arash77>`_ in `#18986 <https://github.com/galaxyproject/galaxy/pull/18986>`_

* Fix the bioblend test failures by `@arash77 <https://github.com/arash77>`_ in `#18991 <https://github.com/galaxyproject/galaxy/pull/18991>`_

* Fix job directory not being cleaned up by `@davelopez <https://github.com/davelopez>`_ in `#18997 <https://github.com/galaxyproject/galaxy/pull/18997>`_

* Fixes random job failures in kubernetes  by `@mapk-amazon <https://github.com/mapk-amazon>`_ in `#19001 <https://github.com/galaxyproject/galaxy/pull/19001>`_

* Fix numerous issues with tool input format "21.01" by `@jmchilton <https://github.com/jmchilton>`_ in `#19030 <https://github.com/galaxyproject/galaxy/pull/19030>`_

* Fix test_stock.py unit test by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19037 <https://github.com/galaxyproject/galaxy/pull/19037>`_

* quota: do not complain on no-change of default by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19045 <https://github.com/galaxyproject/galaxy/pull/19045>`_

* Normalize usernames to lowercase in OIDC authentication by `@arash77 <https://github.com/arash77>`_ in `#19131 <https://github.com/galaxyproject/galaxy/pull/19131>`_

* 2 small uv config fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19146 <https://github.com/galaxyproject/galaxy/pull/19146>`_

* Fix invocation metrics usability by providing job context. by `@jmchilton <https://github.com/jmchilton>`_ in `#19279 <https://github.com/galaxyproject/galaxy/pull/19279>`_

* Fix import of previously-deleted TRS workflow by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19311 <https://github.com/galaxyproject/galaxy/pull/19311>`_

* Fix quota usage with user object stores by `@davelopez <https://github.com/davelopez>`_ in `#19323 <https://github.com/galaxyproject/galaxy/pull/19323>`_

* Fix workflows with optional non-default parameter input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19332 <https://github.com/galaxyproject/galaxy/pull/19332>`_

* Backport #19001 kubernetes api client fix by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19338 <https://github.com/galaxyproject/galaxy/pull/19338>`_

* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_

* Use select_from_url test data from github, not usegalaxy.org by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19352 <https://github.com/galaxyproject/galaxy/pull/19352>`_

* Fix to only show ChatGXY when available. by `@dannon <https://github.com/dannon>`_ in `#19389 <https://github.com/galaxyproject/galaxy/pull/19389>`_

* Fix job parameter summary for inputs without label by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19427 <https://github.com/galaxyproject/galaxy/pull/19427>`_

* Show Keycloak provider label in UI by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#19447 <https://github.com/galaxyproject/galaxy/pull/19447>`_

* Expression tool format source backport by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19466 <https://github.com/galaxyproject/galaxy/pull/19466>`_

* backport of defensive refresh tokens by `@martenson <https://github.com/martenson>`_ in `#19471 <https://github.com/galaxyproject/galaxy/pull/19471>`_

* Improve relabel from file error if file doesn't contain enough lines by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19480 <https://github.com/galaxyproject/galaxy/pull/19480>`_

* Serialize message exceptions on execution error by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19483 <https://github.com/galaxyproject/galaxy/pull/19483>`_

* Fail with error message when submitting invalid request by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19489 <https://github.com/galaxyproject/galaxy/pull/19489>`_

* Fix deleting lddas in batch by `@davelopez <https://github.com/davelopez>`_ in `#19506 <https://github.com/galaxyproject/galaxy/pull/19506>`_

* Skip token refresh without refresh token in psa by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19514 <https://github.com/galaxyproject/galaxy/pull/19514>`_

* Downgrade 'InteractiveTools are not enabled' to warning by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19518 <https://github.com/galaxyproject/galaxy/pull/19518>`_

* Fix extracting workflows from purged and deleted histories by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19525 <https://github.com/galaxyproject/galaxy/pull/19525>`_

* Fix error message when subworkflow input connection missing by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19526 <https://github.com/galaxyproject/galaxy/pull/19526>`_

* Fix remap for parameter called id by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19532 <https://github.com/galaxyproject/galaxy/pull/19532>`_

* Fix admin cancel job message not being displayed to the user by `@davelopez <https://github.com/davelopez>`_ in `#19537 <https://github.com/galaxyproject/galaxy/pull/19537>`_

* Use instance wide default ``real_system_username`` if not defined on destination by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19544 <https://github.com/galaxyproject/galaxy/pull/19544>`_



============

Enhancements

============



* Add clean up job working directory as celery task by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#15816 <https://github.com/galaxyproject/galaxy/pull/15816>`_

* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_

* Feature - stdout live reporting by `@gecage952 <https://github.com/gecage952>`_ in `#16975 <https://github.com/galaxyproject/galaxy/pull/16975>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18226 <https://github.com/galaxyproject/galaxy/pull/18226>`_

* Allow OAuth 2.0 user defined file sources (w/Dropbox integration) by `@jmchilton <https://github.com/jmchilton>`_ in `#18272 <https://github.com/galaxyproject/galaxy/pull/18272>`_

* More data access tests, some refactoring and cleanup by `@jdavcs <https://github.com/jdavcs>`_ in `#18312 <https://github.com/galaxyproject/galaxy/pull/18312>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18406 <https://github.com/galaxyproject/galaxy/pull/18406>`_

* Add Python 3.13 support by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18449 <https://github.com/galaxyproject/galaxy/pull/18449>`_

* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_

* Support high-availability setups for the interactive tools proxy by `@kysrpex <https://github.com/kysrpex>`_ in `#18481 <https://github.com/galaxyproject/galaxy/pull/18481>`_

* Add unique constraints to the email and username fields in the galaxy_user table by `@jdavcs <https://github.com/jdavcs>`_ in `#18493 <https://github.com/galaxyproject/galaxy/pull/18493>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18505 <https://github.com/galaxyproject/galaxy/pull/18505>`_

* Improvements for K8S deployment (especially ITs) by `@almahmoud <https://github.com/almahmoud>`_ in `#18514 <https://github.com/galaxyproject/galaxy/pull/18514>`_

* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_

* Improvements to Tool Test Parsing by `@jmchilton <https://github.com/jmchilton>`_ in `#18560 <https://github.com/galaxyproject/galaxy/pull/18560>`_

* Group tool templating exceptions in sentry by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18570 <https://github.com/galaxyproject/galaxy/pull/18570>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18578 <https://github.com/galaxyproject/galaxy/pull/18578>`_

* Record container id and type in core job metrics by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18579 <https://github.com/galaxyproject/galaxy/pull/18579>`_

* Rev pinned gxformat2. by `@jmchilton <https://github.com/jmchilton>`_ in `#18624 <https://github.com/galaxyproject/galaxy/pull/18624>`_

* Better Typing for Tool Execution Plumbing by `@jmchilton <https://github.com/jmchilton>`_ in `#18626 <https://github.com/galaxyproject/galaxy/pull/18626>`_

* Remove unused functions in dataset managers by `@jmchilton <https://github.com/jmchilton>`_ in `#18631 <https://github.com/galaxyproject/galaxy/pull/18631>`_

* Parameter Model Improvements by `@jmchilton <https://github.com/jmchilton>`_ in `#18641 <https://github.com/galaxyproject/galaxy/pull/18641>`_

* Parse stored config details to script-based visualizations by `@guerler <https://github.com/guerler>`_ in `#18651 <https://github.com/galaxyproject/galaxy/pull/18651>`_

* Another round of parameter model improvements. by `@jmchilton <https://github.com/jmchilton>`_ in `#18673 <https://github.com/galaxyproject/galaxy/pull/18673>`_

* Allow access to invocation via shared or published history by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18707 <https://github.com/galaxyproject/galaxy/pull/18707>`_

* Allow specifying multi-select workflow parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18715 <https://github.com/galaxyproject/galaxy/pull/18715>`_

* Improvements to help terms & tool help. by `@jmchilton <https://github.com/jmchilton>`_ in `#18722 <https://github.com/galaxyproject/galaxy/pull/18722>`_

* Add a retry when deleting a k8s job by `@afgane <https://github.com/afgane>`_ in `#18744 <https://github.com/galaxyproject/galaxy/pull/18744>`_

* More typing, docs, and decomposition around tool execution by `@jmchilton <https://github.com/jmchilton>`_ in `#18758 <https://github.com/galaxyproject/galaxy/pull/18758>`_

* Add Workflow Title and Annotation sections by `@hujambo-dunia <https://github.com/hujambo-dunia>`_ in `#18762 <https://github.com/galaxyproject/galaxy/pull/18762>`_

* Refactor ``LibraryDatasetsManager`` and fix type annotation issue by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18773 <https://github.com/galaxyproject/galaxy/pull/18773>`_

* Backend handling of setting user-role, user-group, and group-role associations by `@jdavcs <https://github.com/jdavcs>`_ in `#18777 <https://github.com/galaxyproject/galaxy/pull/18777>`_

* Allow using tracks and groups in visualization xml by `@guerler <https://github.com/guerler>`_ in `#18779 <https://github.com/galaxyproject/galaxy/pull/18779>`_

* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_

* Update Mypy to 1.11.2 and fix new signature override errors by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18811 <https://github.com/galaxyproject/galaxy/pull/18811>`_

* Migrate Library Contents API to FastAPI by `@arash77 <https://github.com/arash77>`_ in `#18838 <https://github.com/galaxyproject/galaxy/pull/18838>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18864 <https://github.com/galaxyproject/galaxy/pull/18864>`_

* Implement Pydantic model for workflow test format.  by `@jmchilton <https://github.com/jmchilton>`_ in `#18884 <https://github.com/galaxyproject/galaxy/pull/18884>`_

* Remove some unused dynamic drill down options. by `@jmchilton <https://github.com/jmchilton>`_ in `#18892 <https://github.com/galaxyproject/galaxy/pull/18892>`_

* Enable ``ignore-without-code`` mypy error code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18898 <https://github.com/galaxyproject/galaxy/pull/18898>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18904 <https://github.com/galaxyproject/galaxy/pull/18904>`_

* Type annotations and fixes by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18911 <https://github.com/galaxyproject/galaxy/pull/18911>`_

* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_

* Remove outdated fimo wrapper and galaxy-sequence-utils dependency by `@nsoranzo <https://github.com/nsoranzo>`_ in `#18937 <https://github.com/galaxyproject/galaxy/pull/18937>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18943 <https://github.com/galaxyproject/galaxy/pull/18943>`_

* Allow to overwrite `real_system_username` per destination by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18945 <https://github.com/galaxyproject/galaxy/pull/18945>`_

* Assert that `data_column` parameters have a valid `data_ref` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18949 <https://github.com/galaxyproject/galaxy/pull/18949>`_

* Decouple user email from role name by `@jdavcs <https://github.com/jdavcs>`_ in `#18966 <https://github.com/galaxyproject/galaxy/pull/18966>`_

* Workflow landing improvements by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18979 <https://github.com/galaxyproject/galaxy/pull/18979>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#18982 <https://github.com/galaxyproject/galaxy/pull/18982>`_

* Allow recovering a normalized version of workflow request state from API by `@jmchilton <https://github.com/jmchilton>`_ in `#18985 <https://github.com/galaxyproject/galaxy/pull/18985>`_

* Enhance relabel_from_file to work with any column pair in mapping file by `@wm75 <https://github.com/wm75>`_ in `#19022 <https://github.com/galaxyproject/galaxy/pull/19022>`_

* A variety of improvements around tool parameter modeling (second try) by `@jmchilton <https://github.com/jmchilton>`_ in `#19027 <https://github.com/galaxyproject/galaxy/pull/19027>`_

* Better logging around tool loading by `@jmchilton <https://github.com/jmchilton>`_ in `#19029 <https://github.com/galaxyproject/galaxy/pull/19029>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19031 <https://github.com/galaxyproject/galaxy/pull/19031>`_

* Silence the quota manager for updates by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#19046 <https://github.com/galaxyproject/galaxy/pull/19046>`_

* Add job metrics per invocation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19048 <https://github.com/galaxyproject/galaxy/pull/19048>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19062 <https://github.com/galaxyproject/galaxy/pull/19062>`_

* Annotate ``DatasetAssociationManager`` as generic type by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19063 <https://github.com/galaxyproject/galaxy/pull/19063>`_

* Move TRS import into WorkflowContentManager by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19070 <https://github.com/galaxyproject/galaxy/pull/19070>`_

* Replace poetry with uv by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19075 <https://github.com/galaxyproject/galaxy/pull/19075>`_

* Allow deferred datasets to behave as URIs by `@davelopez <https://github.com/davelopez>`_ in `#19077 <https://github.com/galaxyproject/galaxy/pull/19077>`_

* Implement workflow parameter validators. by `@jmchilton <https://github.com/jmchilton>`_ in `#19092 <https://github.com/galaxyproject/galaxy/pull/19092>`_

* Allow directory_uri workflow parameters.  by `@jmchilton <https://github.com/jmchilton>`_ in `#19093 <https://github.com/galaxyproject/galaxy/pull/19093>`_

* Better cleanup of sharing roles on user purge by `@jdavcs <https://github.com/jdavcs>`_ in `#19096 <https://github.com/galaxyproject/galaxy/pull/19096>`_

* Support deferred datasets in visualizations by `@davelopez <https://github.com/davelopez>`_ in `#19097 <https://github.com/galaxyproject/galaxy/pull/19097>`_

* uv: Do not recalculate dependencies when exporting by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19099 <https://github.com/galaxyproject/galaxy/pull/19099>`_

* Access public history in job cache / job search by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19108 <https://github.com/galaxyproject/galaxy/pull/19108>`_

* Test hash validation also for upload by path by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19109 <https://github.com/galaxyproject/galaxy/pull/19109>`_

* Always validate hashes when provided by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19110 <https://github.com/galaxyproject/galaxy/pull/19110>`_

* Add type annotations to ``JobRunnerMapper`` and related code by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19115 <https://github.com/galaxyproject/galaxy/pull/19115>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19123 <https://github.com/galaxyproject/galaxy/pull/19123>`_

* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_

* Remove OpenLayers legacy files and add SVG logo by `@guerler <https://github.com/guerler>`_ in `#19135 <https://github.com/galaxyproject/galaxy/pull/19135>`_

* Update Python dependencies by `@galaxybot <https://github.com/galaxybot>`_ in `#19149 <https://github.com/galaxyproject/galaxy/pull/19149>`_

* Fix default value handling for parameters connected to required parameters by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19219 <https://github.com/galaxyproject/galaxy/pull/19219>`_

* Workflow Inputs Activity by `@ElectronicBlueberry <https://github.com/ElectronicBlueberry>`_ in `#19252 <https://github.com/galaxyproject/galaxy/pull/19252>`_



=============

Other changes

=============



* Fix workflow invocation accessibility check by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18746 <https://github.com/galaxyproject/galaxy/pull/18746>`_

* Fix destentation typo by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19140 <https://github.com/galaxyproject/galaxy/pull/19140>`_



-------------------

24.1.4 (2024-12-11)

-------------------

packages/auth/HISTORY.rst

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-------------------

24.2.0 (2025-02-06)

-------------------



No recorded changes since last release



-------------------

24.1.4 (2024-12-11)

-------------------

packages/config/HISTORY.rst

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-------------------

24.2.0 (2025-02-06)

-------------------





=========

Bug fixes

=========



* Fix loading error for built in tool `sift` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18357 <https://github.com/galaxyproject/galaxy/pull/18357>`_

* Add gtf to auto_compressed_types by `@mvdbeek <https://github.com/mvdbeek>`_ in `#19175 <https://github.com/galaxyproject/galaxy/pull/19175>`_

* Partial backport of #19331 by `@nsoranzo <https://github.com/nsoranzo>`_ in `#19342 <https://github.com/galaxyproject/galaxy/pull/19342>`_

* Fix to only show ChatGXY when available. by `@dannon <https://github.com/dannon>`_ in `#19389 <https://github.com/galaxyproject/galaxy/pull/19389>`_



============

Enhancements

============



* Experimental galactic wizard by `@dannon <https://github.com/dannon>`_ in `#15860 <https://github.com/galaxyproject/galaxy/pull/15860>`_

* Improve usability of Directory datatype by `@wm75 <https://github.com/wm75>`_ in `#17614 <https://github.com/galaxyproject/galaxy/pull/17614>`_

* Add pod5 datatype by `@TomHarrop <https://github.com/TomHarrop>`_ in `#18419 <https://github.com/galaxyproject/galaxy/pull/18419>`_

* Add onedata templates by `@bwalkowi <https://github.com/bwalkowi>`_ in `#18457 <https://github.com/galaxyproject/galaxy/pull/18457>`_

* Support high-availability setups for the interactive tools proxy by `@kysrpex <https://github.com/kysrpex>`_ in `#18481 <https://github.com/galaxyproject/galaxy/pull/18481>`_

* Minor config documentation enhancements by `@bgruening <https://github.com/bgruening>`_ in `#18499 <https://github.com/galaxyproject/galaxy/pull/18499>`_

* Add Tool-Centric APIs to the Tool Shed 2.0 by `@jmchilton <https://github.com/jmchilton>`_ in `#18524 <https://github.com/galaxyproject/galaxy/pull/18524>`_

* Bring your own file sources: Add the WebDAV template and configuration by `@sanjaysrikakulam <https://github.com/sanjaysrikakulam>`_ in `#18598 <https://github.com/galaxyproject/galaxy/pull/18598>`_

* Add BlobToolkit to the list of interactive tools by `@Delphine-L <https://github.com/Delphine-L>`_ in `#18630 <https://github.com/galaxyproject/galaxy/pull/18630>`_

* Remove `defaults` channel for conda usage by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#18757 <https://github.com/galaxyproject/galaxy/pull/18757>`_

* Workflow Landing Requests by `@jmchilton <https://github.com/jmchilton>`_ in `#18807 <https://github.com/galaxyproject/galaxy/pull/18807>`_

* Jupyter Interactive Tool 1.0.1/24.07 by `@natefoo <https://github.com/natefoo>`_ in `#18861 <https://github.com/galaxyproject/galaxy/pull/18861>`_

* Allow setting a few global defaults for file source plugin types. by `@jmchilton <https://github.com/jmchilton>`_ in `#18909 <https://github.com/galaxyproject/galaxy/pull/18909>`_

* Add filter null collection operation tool by `@mvdbeek <https://github.com/mvdbeek>`_ in `#18928 <https://github.com/galaxyproject/galaxy/pull/18928>`_

* Add hint to the tool schema about runtime conditional changes by `@martenson <https://github.com/martenson>`_ in `#18996 <https://github.com/galaxyproject/galaxy/pull/18996>`_

* Irods ssl connection by `@pauldg <https://github.com/pauldg>`_ in `#19014 <https://github.com/galaxyproject/galaxy/pull/19014>`_

* Add some Zarr-based datatypes by `@davelopez <https://github.com/davelopez>`_ in `#19040 <https://github.com/galaxyproject/galaxy/pull/19040>`_

* Run installed Galaxy with no config and a simplified entry point by `@natefoo <https://github.com/natefoo>`_ in `#19050 <https://github.com/galaxyproject/galaxy/pull/19050>`_

* Add XML based `vtk` datatype by `@tStehling <https://github.com/tStehling>`_ in `#19104 <https://github.com/galaxyproject/galaxy/pull/19104>`_

* Allow a posix file source to prefer linking. by `@jmchilton <https://github.com/jmchilton>`_ in `#19132 <https://github.com/galaxyproject/galaxy/pull/19132>`_

* Add bcsp datatype by `@SantaMcCloud <https://github.com/SantaMcCloud>`_ in `#19365 <https://github.com/galaxyproject/galaxy/pull/19365>`_

* add MuData as subclass of H5 by `@pavanvidem <https://github.com/pavanvidem>`_ in `#19416 <https://github.com/galaxyproject/galaxy/pull/19416>`_



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24.1.4 (2024-12-11)

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