Unverified Commit b050d3d7 authored by Nate Coraor's avatar Nate Coraor Committed by GitHub
Browse files

Merge pull request #15927 from mvdbeek/fix_outputs_to_working_directory_job_wrapper_check 

[22.05] Fix mixed outputs_to_working_directory pulsar destinations
parents 387660b0 55f5fe1e

lib/galaxy/jobs/runners/__init__.py

+2 −1
Original line number Diff line number Diff line
@@ -35,6 +35,7 @@ from galaxy.tool_util.deps.dependencies import ( 
)

from galaxy.tool_util.output_checker import DETECTED_JOB_STATE

from galaxy.util import (

    asbool,

    DATABASE_MAX_STRING_SIZE,

    ExecutionTimer,

    in_directory,
@@ -333,7 +334,7 @@ class BaseJobRunner: 
        output_paths = {}

        for dataset_path in job_wrapper.job_io.get_output_fnames():

            path = dataset_path.real_path

            if job_wrapper.get_destination_configuration("outputs_to_working_directory", False):

            if asbool(job_wrapper.get_destination_configuration("outputs_to_working_directory", False)):

                path = dataset_path.false_path

            output_paths[dataset_path.dataset_id] = path