Unverified Commit a7398dfb authored by Marius van den Beek's avatar Marius van den Beek Committed by GitHub
Browse files

Merge pull request #17875 from SaimMomin12/release_23.2 

Added 4dn_pairs and 4dn_pairsam datatypes
parents c88d2857 2b42faf2

lib/galaxy/config/sample/datatypes_conf.xml.sample

+2 −0
Original line number Diff line number Diff line
@@ -411,6 +411,8 @@ 
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>

      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>

    </datatype>

    <datatype extension="4dn_pairs" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" description="The pairs format is a standard text format for pairs of genomic loci given as 1bp point positions" description_url="https://github.com/4dn-dcic/pairix/blob/master/pairs_format_specification.md#pairs-file"/>

    <datatype extension="4dn_pairsam" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true" description="A simple tabular format to store the information on ligation junctions detected in sequences from Hi-C experiments." description_url="https://pairsamtools.readthedocs.io/en/latest/pairsam.html"/>

    <datatype extension="pdf" type="galaxy.datatypes.images:Pdf" mimetype="application/pdf" display_in_upload="true"/>

    <datatype extension="pileup" type="galaxy.datatypes.tabular:Pileup" display_in_upload="true">

      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>