Unverified Commit 8e27ecae authored by Marius van den Beek's avatar Marius van den Beek Committed by GitHub
Browse files

Merge pull request #20457 from davelopez/25.0_update_tiffviewer 

[25.0] Update tiffviewer to latest version supporting more formats
parents f667ce8d 29c2c11c

.gitignore

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@@ -177,6 +177,7 @@ config/plugins/**/static/*.map 
config/plugins/visualizations/annotate_image/static/jquery.contextMenu.css

config/plugins/visualizations/nvd3/nvd3_bar/static/nvd3.js

config/plugins/visualizations/scatterplot/static/scatterplot.js

config/plugins/visualizations/tiffviewer/static/



# CWL conformance tests

lib/galaxy_test/api/cwl/test_cwl_conformance_v1_?.py

client/gulpfile.js

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@@ -23,7 +23,6 @@ const PLUGIN_BUILD_IDS = [ 
    "nvd3/nvd3_bar",

    "pv",

    "scatterplot",

    "tiffviewer",

];

const INSTALL_PLUGIN_BUILD_IDS = [

    "aceeditor",
@@ -47,6 +46,7 @@ const INSTALL_PLUGIN_BUILD_IDS = [ 
    "plotly",

    "plyr",

    "tabulator",

    "tiffviewer",

    "ts_visjs",

    "unipept",

    "venn",

config/plugins/visualizations/tiffviewer/config/tiffviewer.xml

+4 −1
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@@ -15,7 +15,10 @@ 
    <params>

        <param required="true">dataset_id</param>

    </params>

    <entry_point entry_point_type="script" src="script.js" css="script.css"/>

    <requirements>

        <requirement type="npm" version="0.0.1" package="@galaxyproject/tiffviewer"/>

    </requirements>

    <entry_point entry_point_type="script" src="index.js" css="index.css" />

    <tests>

        <test>

            <param name="dataset_id" value="http://cdn.jsdelivr.net/gh/galaxyproject/galaxy-test-data/1.tiff" ftype="tiff" />

config/plugins/visualizations/tiffviewer/package.json

deleted100644 → 0
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{

    "name": "tiff-visualization",

    "version": "0.1.0",

    "description": "A visualization for Tiff files based on react-tiff package",

    "keywords": [

        "galaxy",

        "visualization",

        "Tiff"

    ],

    "license": "MIT",

    "dependencies": {

        "react": "18.2.0",

        "react-dom": "18.2.0",

        "react-tiff": "^0.0.8"

    },

    "scripts": {

        "build": "parcel build src/script.js --dist-dir static"

    },

    "devDependencies": {

        "buffer": "^5.5.0||^6.0.0",

        "parcel": "^2.9.3",

        "process": "^0.11.10"

    }

}

config/plugins/visualizations/tiffviewer/src/script.js

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import { StrictMode } from "react";



import { TIFFViewer } from "react-tiff";

import { createRoot } from "react-dom/client";

import "react-tiff/dist/index.css";



const App = (props) => {

    return <TIFFViewer tiff={props.dataset_url} paginate="bottom" />;

};



const { root, visualization_config } = JSON.parse(document.getElementById("app").dataset.incoming);



const datasetId = visualization_config.dataset_id;



const url = root + "api/datasets/" + datasetId + "/display";



const rootElement = createRoot(document.getElementById("app"));

rootElement.render(

    <StrictMode>

        <App dataset_url={url} />

    </StrictMode>

);