Commit 85d4b423 authored by Matthias Bernt's avatar Matthias Bernt
Browse files

add test for output actions for collection elements

parent 001faf7d

test/functional/tools/collection_creates_pair_format.xml

+7 −0
Original line number Diff line number Diff line
@@ -19,6 +19,9 @@ 
        <change_format>

          <when input="out_format" value="interval" format="interval" />

        </change_format>

        <actions>

            <action name="dbkey" type="metadata" default="hg38" />

        </actions>

      </data>

      <data name="reverse" format_source="input1" from_work_dir="reverse.txt" />

    </collection>
@@ -37,6 +40,7 @@ 
      <param name="input1" ftype="bed" value="simple_lines_interleaved.txt" />

      <output_collection name="paired_output" type="paired">

        <element name="forward" ftype="txt">

          <metadata name="dbkey" value="hg38"/>

          <assert_contents>

            <has_text_matching expression="^This is a line of text.\nThis is a line of text.\n$" />

          </assert_contents>
@@ -49,6 +53,7 @@ 
      </output_collection>

      <output_collection name="paired_output_default_format" type="paired">

        <element name="forward" ftype="fasta">

          <metadata name="dbkey" value="hg38"/>

          <assert_contents>

            <has_text_matching expression="^This is a line of text.\nThis is a line of text.\n$" />

          </assert_contents>
@@ -65,6 +70,7 @@ 
      <param name="out_format" value="interval"/>

      <output_collection name="paired_output" type="paired">

        <element name="forward" ftype="interval">

          <metadata name="dbkey" value="hg38"/>

          <assert_contents>

            <has_text_matching expression="^This is a line of text.\nThis is a line of text.\n$" />

          </assert_contents>
@@ -77,6 +83,7 @@ 
      </output_collection>

      <output_collection name="paired_output_default_format" type="paired">

        <element name="forward" ftype="interval">

          <metadata name="dbkey" value="hg38"/>

          <assert_contents>

            <has_text_matching expression="^This is a line of text.\nThis is a line of text.\n$" />

          </assert_contents>