Unverified Commit 773301a6 authored by mvdbeek's avatar mvdbeek
Browse files

Provide explicit inputs

parent 21f1fc9d

lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml

+9 −3
Original line number Diff line number Diff line
@@ -41,6 +41,7 @@ 
    <tests>

        <test>

            <param name="input1" ftype="bed" value="droPer1.bed"/>

            <param name="bgzip" ftype="bgzip" value="droPer1.bed.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="133"/>
@@ -55,6 +56,7 @@ 
        </test>

        <test>

            <param name="input1" ftype="encodepeak" value="encode.broad.peak"/>

            <param name="bgzip" ftype="bgzip" value="encode.broad.peak.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="110" delta="10"/>
@@ -69,6 +71,7 @@ 
        </test>

        <test>

            <param name="input1" ftype="gff" value="gff_filter_by_feature_count_out2.gff"/>

            <param name="bgzip" ftype="bgzip" value="gff_filter_by_feature_count_out2.gff.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="120"/>
@@ -83,6 +86,7 @@ 
        </test>

        <test>

            <param name="input1" ftype="interval" value="2.interval"/>

            <param name="bgzip" ftype="bgzip" value="2.interval.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="247"/>
@@ -97,6 +101,7 @@ 
        </test>

        <test>

            <param name="input1" ftype="vcf" value="vcf_to_maf_in.vcf"/>

            <param name="bgzip" ftype="bgzip" value="vcf_to_maf_in.vcf.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="143"/>
@@ -111,6 +116,7 @@ 
        </test>

        <test>

            <param name="input1" ftype="gtf" value="cufflinks_out1.gtf"/>

            <param name="bgzip" ftype="bgzip" value="cufflinks_out1.gtf.gz"/>

            <output name="output1" ftype="tabix">

                <assert_contents>

                    <has_size value="125"/>