Merge pull request #9309 from dannon/backport-reports-py3-fix

import time

import galaxy.model

from galaxy.config import configure_logging

from galaxy.security import idencoding

from galaxy.web_stack import application_stack_instance

from . import config

        # Read config file and check for errors

        self.config = config.Configuration(**kwargs)

        self.config.check()

        config.configure_logging(self.config)

        configure_logging(self.config)

        self.application_stack = application_stack_instance()

        # Determine the database url

        if self.config.database_connection:

import logging

import os

import re

import sys

from galaxy.util import string_as_bool

                value = conversions[key](value)

            rval[key] = value

    return rval

def configure_logging(config):

    """

    Allow some basic logging configuration to be read from the cherrpy

    config.

    """

    format = config.get("log_format", "%(name)s %(levelname)s %(asctime)s %(message)s")

    level = logging._levelNames[config.get("log_level", "DEBUG")]

    destination = config.get("log_destination", "stdout")

    log.info("Logging at '%s' level to '%s'" % (level, destination))

    # Get root logger

    root = logging.getLogger()

    # Set level

    root.setLevel(level)

    # Turn down paste httpserver logging

    if level <= logging.DEBUG:

        logging.getLogger("paste.httpserver.ThreadPool").setLevel(logging.WARN)

    # Remove old handlers

    for h in root.handlers[:]:

        root.removeHandler(h)

    # Create handler

    if destination == "stdout":

        handler = logging.StreamHandler(sys.stdout)

    else:

        handler = logging.FileHandler(destination)

    # Create formatter

    formatter = logging.Formatter(format)

    # Hook everything up

    handler.setFormatter(formatter)

    root.addHandler(handler)