Update Python dependencies

ase==3.23.0 ; python_full_version < '3.9'

ase==3.24.0 ; python_full_version >= '3.9'

async-timeout==5.0.1 ; python_full_version < '3.11'

attrs==24.3.0

attrs==25.1.0

axe-selenium-python==2.1.6

babel==2.16.0

babel==2.17.0

backports-tarfile==1.2.0 ; python_full_version < '3.12' and platform_machine != 'ppc64le' and platform_machine != 's390x'

backports-zoneinfo==0.2.1 ; python_full_version < '3.9'

black==24.8.0 ; python_full_version < '3.9'

black==24.10.0 ; python_full_version >= '3.9'

black==25.1.0 ; python_full_version >= '3.9'

boto3==1.36.3

botocore==1.36.3

build==1.2.2.post1

cachecontrol==0.14.2

certifi==2024.12.14

certifi==2025.1.31

cffi==1.17.1

charset-normalizer==3.4.1

click==8.1.8

codespell==2.4.0

codespell==2.4.1

colorama==0.4.6 ; os_name == 'nt' or sys_platform == 'win32'

contourpy==1.1.1 ; python_full_version < '3.9'

contourpy==1.3.0 ; python_full_version == '3.9.*'

darkgraylib==1.2.1

decorator==5.1.1 ; python_full_version >= '3.9'

defusedxml==0.7.1

deprecated==1.2.17

deprecated==1.2.18

docutils==0.20.1 ; python_full_version < '3.9'

docutils==0.21.2 ; python_full_version >= '3.9'

dogpile-cache==1.3.3 ; python_full_version >= '3.9'

dogpile-cache==1.3.4 ; python_full_version >= '3.9'

exceptiongroup==1.2.2 ; python_full_version < '3.11'

filelock==3.16.1 ; python_full_version < '3.9'

filelock==3.17.0 ; python_full_version >= '3.9'

fluent-logger==0.11.1

fonttools==4.55.6

fonttools==4.55.8

frozenlist==1.5.0

galaxy-release-util==0.2.0

graylint==1.1.1

iniconfig==2.0.0

isodate==0.6.1 ; python_full_version < '3.9'

isodate==0.7.2 ; python_full_version >= '3.9' and python_full_version < '3.11'

isort==5.13.2

isort==5.13.2 ; python_full_version < '3.9'

isort==6.0.0 ; python_full_version >= '3.9'

jaraco-classes==3.4.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'

jaraco-context==6.0.1 ; platform_machine != 'ppc64le' and platform_machine != 's390x'

jaraco-functools==4.1.0 ; platform_machine != 'ppc64le' and platform_machine != 's390x'

pkgutil-resolve-name==1.3.10 ; python_version < '0'

platformdirs==4.3.6

playwright==1.48.0 ; python_full_version < '3.9'

playwright==1.49.1 ; python_full_version >= '3.9'

playwright==1.50.0 ; python_full_version >= '3.9'

pluggy==1.5.0

port-for==0.7.3 ; python_full_version < '3.9'

port-for==0.7.4 ; python_full_version >= '3.9'

prettytable==3.11.0 ; python_full_version < '3.9'

prettytable==3.13.0 ; python_full_version >= '3.9'

prettytable==3.14.0 ; python_full_version >= '3.9'

propcache==0.2.0 ; python_full_version < '3.9'

propcache==0.2.1 ; python_full_version >= '3.9'

psutil==6.1.1 ; sys_platform != 'cygwin'

psycopg==3.2.4

pycparser==2.22

pyee==12.0.0

pyee==12.0.0 ; python_full_version < '3.9'

pyee==12.1.1 ; python_full_version >= '3.9'

pygithub==2.5.0

pygments==2.19.1

pyjwt==2.9.0 ; python_full_version < '3.9'

pytest-metadata==3.1.1

pytest-mock==3.14.0

pytest-playwright==0.5.2 ; python_full_version < '3.9'

pytest-playwright==0.6.2 ; python_full_version >= '3.9'

pytest-playwright==0.7.0 ; python_full_version >= '3.9'

pytest-postgresql==6.1.1

pytest-shard==0.1.2

python-dateutil==2.9.0.post0

python-irodsclient==3.0.0

python-slugify==8.0.4

pytz==2024.2 ; python_full_version < '3.9'

pytz==2025.1 ; python_full_version < '3.9'

pywin32-ctypes==0.2.3 ; platform_machine != 'ppc64le' and platform_machine != 's390x' and sys_platform == 'win32'

pyyaml==6.0.2

rdflib==6.3.2 ; python_full_version < '3.8.1'

readme-renderer==43.0 ; python_full_version < '3.9'

readme-renderer==44.0 ; python_full_version >= '3.9'

referencing==0.35.1 ; python_version < '0'

referencing==0.36.1 ; python_full_version >= '3.9'

referencing==0.36.2 ; python_full_version >= '3.9'

requests==2.32.3

requests-toolbelt==1.0.0

responses==0.25.6

ruamel-yaml==0.18.10

ruamel-yaml-clib==0.2.8 ; python_full_version < '3.9' and platform_python_implementation == 'CPython'

ruamel-yaml-clib==0.2.12 ; python_full_version >= '3.9' and python_full_version < '3.13' and platform_python_implementation == 'CPython'

rucio-clients==36.1.0 ; python_full_version >= '3.9'

rucio-clients==36.2.0 ; python_full_version >= '3.9'

s3transfer==0.11.2

schema-salad==8.7.20241010092723 ; python_full_version < '3.9'

schema-salad==8.8.20241206093842 ; python_full_version >= '3.9'

attrs==24.3.0

attrs==25.1.0

flake8==7.1.1

flake8-bugbear==24.12.12

mccabe==0.7.0

pycodestyle==2.12.1

pyflakes==3.2.0

ruff==0.9.3

ruff==0.9.4

argcomplete==3.5.3

async-timeout==5.0.1 ; python_full_version < '3.11'

attmap==0.13.2

attrs==24.3.0

babel==2.16.0

attrs==25.1.0

babel==2.17.0

backports-zoneinfo==0.2.1 ; python_full_version < '3.9'

bagit==1.8.1

bagit-profile==1.3.1

bioblend==1.4.0

bleach==6.1.0 ; python_full_version < '3.9'

bleach==6.2.0 ; python_full_version >= '3.9'

boltons==24.1.0

boltons==25.0.0

boto==2.49.0

botocore==1.36.3

bx-python==0.13.0

cachecontrol==0.14.2

celery==5.4.0

certifi==2024.12.14

certifi==2025.1.31

cffi==1.17.1

charset-normalizer==3.4.1

circus==0.18.0

edam-ontology==1.25.2

email-validator==2.2.0

exceptiongroup==1.2.2 ; python_full_version < '3.11'

fastapi-slim==0.115.7

fastapi-slim==0.115.8

filelock==3.16.1 ; python_full_version < '3.9'

filelock==3.17.0 ; python_full_version >= '3.9'

fissix==24.4.24 ; python_full_version >= '3.13'

frozenlist==1.5.0

fs==2.4.16

fsspec==2024.10.0 ; python_full_version < '3.9'

fsspec==2024.12.0 ; python_full_version >= '3.9'

fsspec==2025.2.0 ; python_full_version >= '3.9'

future==1.0.0

galaxy2cwl==0.1.4 ; python_full_version < '3.9'

graphene==3.4.3

graphene-sqlalchemy==3.0.0rc2

graphql-core==3.2.5

graphql-core==3.2.6

graphql-relay==3.2.0

gravity==1.0.7

greenlet==3.1.1 ; (python_full_version < '3.14' and platform_machine == 'AMD64') or (python_full_version < '3.14' and platform_machine == 'WIN32') or (python_full_version < '3.14' and platform_machine == 'aarch64') or (python_full_version < '3.14' and platform_machine == 'amd64') or (python_full_version < '3.14' and platform_machine == 'ppc64le') or (python_full_version < '3.14' and platform_machine == 'win32') or (python_full_version < '3.14' and platform_machine == 'x86_64')

python-multipart==0.0.20

python-slugify==8.0.4

python3-openid==3.2.0

pytz==2024.2

pytz==2025.1

pyyaml==6.0.2

pyzmq==26.2.0

pyzmq==26.2.1

rdflib==6.3.2 ; python_full_version < '3.8.1'

rdflib==7.0.0 ; python_full_version >= '3.8.1' and python_full_version < '3.9'

rdflib==7.1.3 ; python_full_version >= '3.9'

referencing==0.35.1 ; python_full_version < '3.9'

referencing==0.36.1 ; python_full_version >= '3.9'

referencing==0.36.2 ; python_full_version >= '3.9'

refgenconf==0.12.2

regex==2024.11.6

repoze-lru==0.7

ruamel-yaml-clib==0.2.8 ; python_full_version < '3.9' and platform_python_implementation == 'CPython'

ruamel-yaml-clib==0.2.12 ; python_full_version >= '3.9' and python_full_version < '3.13' and platform_python_implementation == 'CPython'

s3fs==2024.10.0 ; python_full_version < '3.9'

s3fs==2024.12.0 ; python_full_version >= '3.9'

s3fs==2025.2.0 ; python_full_version >= '3.9'

schema-salad==8.7.20241010092723 ; python_full_version < '3.9'

schema-salad==8.8.20241206093842 ; python_full_version >= '3.9'

setuptools==75.3.0 ; python_full_version < '3.9'

# This file was autogenerated by uv via the following command:

#    uv export --frozen --no-hashes --only-group=typecheck

annotated-types==0.7.0

boto3-stubs==1.36.6

botocore-stubs==1.36.6

boto3-stubs==1.36.12

botocore-stubs==1.36.12

cffi==1.17.1 ; platform_python_implementation != 'PyPy'

cryptography==44.0.0

lxml-stubs==0.5.1

mypy==1.14.1

mypy-boto3-s3==1.36.0

mypy-boto3-s3==1.36.9

mypy-extensions==1.0.0

pycparser==2.22 ; platform_python_implementation != 'PyPy'

pydantic==2.10.6

pydantic-core==2.27.2

tomli==2.2.1 ; python_full_version < '3.11'

types-awscrt==0.23.7

types-awscrt==0.23.9

types-bleach==6.2.0.20241123

types-boto==2.49.18.20241019

types-contextvars==2.4.7.3