Loading test/functional/tools/metadata_bed.xml 0 → 100644 +28 −0 Original line number Diff line number Diff line <tool id="metadata_bed" name="BED metadata test" version="1.0.0"> <command> <![CDATA[ echo "chromCol $input1.metadata.chromCol" > $out_file1 && echo "startCol $input1.metadata.startCol" >> $out_file1 && echo "endCol $input1.metadata.endCol" >> $out_file1 && echo "strandCol $input1.metadata.strandCol" >> $out_file1 ]]> </command> <inputs> <param format="interval" name="input1" type="data" label="Choose intervals"/> </inputs> <outputs> <data format="txt" name="out_file1"/> </outputs> <tests> <test> <param name="input1" value="1.bed" ftype="bed"/> <output name="out_file1"> <assert_contents> <has_text text="strandCol 6"/> </assert_contents> </output> </test> </tests> <help> </help> </tool> test/functional/tools/samples_tool_conf.xml +1 −0 Original line number Diff line number Diff line Loading @@ -57,6 +57,7 @@ <tool file="metadata.xml" /> <tool file="metadata_bam.xml" /> <tool file="metadata_bcf.xml" /> <tool file="metadata_bed.xml" /> <tool file="metadata_biom1.xml" /> <tool file="metadata_column_names.xml" /> <tool file="strict_shell.xml" /> Loading Loading
test/functional/tools/metadata_bed.xml 0 → 100644 +28 −0 Original line number Diff line number Diff line <tool id="metadata_bed" name="BED metadata test" version="1.0.0"> <command> <![CDATA[ echo "chromCol $input1.metadata.chromCol" > $out_file1 && echo "startCol $input1.metadata.startCol" >> $out_file1 && echo "endCol $input1.metadata.endCol" >> $out_file1 && echo "strandCol $input1.metadata.strandCol" >> $out_file1 ]]> </command> <inputs> <param format="interval" name="input1" type="data" label="Choose intervals"/> </inputs> <outputs> <data format="txt" name="out_file1"/> </outputs> <tests> <test> <param name="input1" value="1.bed" ftype="bed"/> <output name="out_file1"> <assert_contents> <has_text text="strandCol 6"/> </assert_contents> </output> </test> </tests> <help> </help> </tool>
test/functional/tools/samples_tool_conf.xml +1 −0 Original line number Diff line number Diff line Loading @@ -57,6 +57,7 @@ <tool file="metadata.xml" /> <tool file="metadata_bam.xml" /> <tool file="metadata_bcf.xml" /> <tool file="metadata_bed.xml" /> <tool file="metadata_biom1.xml" /> <tool file="metadata_column_names.xml" /> <tool file="strict_shell.xml" /> Loading