Commit 59f77048 authored by Matthias Bernt's avatar Matthias Bernt
Browse files
parent 2d535ed9
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<tool id="metadata_bed" name="BED metadata test" version="1.0.0">
    <command>
    <![CDATA[
    echo "chromCol $input1.metadata.chromCol" > $out_file1 &&
    echo "startCol $input1.metadata.startCol" >> $out_file1 &&
    echo "endCol $input1.metadata.endCol" >> $out_file1 &&
    echo "strandCol $input1.metadata.strandCol" >> $out_file1
    ]]>
    </command>
    <inputs>
        <param format="interval" name="input1" type="data" label="Choose intervals"/>
    </inputs>
    <outputs>
        <data format="txt" name="out_file1"/>
    </outputs>
    <tests>
        <test>
            <param name="input1" value="1.bed" ftype="bed"/>
            <output name="out_file1">
                <assert_contents>
                    <has_text text="strandCol 6"/>
                </assert_contents>
            </output>
        </test>
    </tests>
    <help>
    </help>
</tool>
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@@ -57,6 +57,7 @@
  <tool file="metadata.xml" />
  <tool file="metadata_bam.xml" />
  <tool file="metadata_bcf.xml" />
  <tool file="metadata_bed.xml" />
  <tool file="metadata_biom1.xml" />
  <tool file="metadata_column_names.xml" />
  <tool file="strict_shell.xml" />