Commit 596cbe7e authored by mvdbeek's avatar mvdbeek
Browse files

Log prepare timing

parent 35162ef0

lib/galaxy/jobs/__init__.py

+2 −0
Original line number Diff line number Diff line
@@ -1093,6 +1093,7 @@ class JobWrapper(HasResourceParameters): 
        Prepare the job to run by creating the working directory and the

        config files.

        """

        prepare_timer = util.ExecutionTimer()

        self.sa_session.expunge_all()  # this prevents the metadata reverting that has been seen in conjunction with the PBS job runner



        if not os.path.exists(self.working_directory):
@@ -1139,6 +1140,7 @@ class JobWrapper(HasResourceParameters): 
            self.write_version_cmd = f"{version_string_cmd} > {compute_environment.version_path()} 2>&1"

        else:

            self.write_version_cmd = None

        log.debug(f"Job wrapper for Job [{job.id}] prepared {prepare_timer}")

        return self.extra_filenames



    def _setup_working_directory(self, job=None):