Unverified Commit 55cc4116 authored by mvdbeek's avatar mvdbeek
Browse files

Enable generating urls for WSGI routes within FastAPI routes

parent 6a00e754

lib/galaxy/app.py

+6 −1
Original line number Diff line number Diff line
@@ -97,7 +97,10 @@ from galaxy.util.task import IntervalTask 
from galaxy.visualization.data_providers.registry import DataProviderRegistry

from galaxy.visualization.genomes import Genomes

from galaxy.visualization.plugins.registry import VisualizationsRegistry

from galaxy.web import url_for

from galaxy.web import (

    legacy_url_for,

    url_for,

)

from galaxy.web.proxy import ProxyManager

from galaxy.web_stack import application_stack_instance, ApplicationStack

from galaxy.webhooks import WebhooksRegistry
@@ -610,10 +613,12 @@ class UniverseApplication(StructuredApp, GalaxyManagerApplication): 
        # Inject url_for for components to more easily optionally depend

        # on url_for.

        self.url_for = url_for

        self.legacy_url_for = legacy_url_for



        self.server_starttime = int(time.time())  # used for cachebusting

        # Limit lifetime of tool shed repository cache to app startup

        self.tool_shed_repository_cache = None

        self.legacy_mapper = None

        log.info(f"Galaxy app startup finished {startup_timer}")



    def _shutdown_queue_worker(self):

lib/galaxy/datatypes/display_applications/application.py

+10 −7
Original line number Diff line number Diff line
@@ -53,13 +53,16 @@ class DisplayApplicationLink: 


    def get_display_url(self, data, trans):

        dataset_hash, user_hash = encode_dataset_user(trans, data, None)

        return trans.app.url_for(controller='dataset',

        return trans.app.legacy_url_for(

            mapper=trans.app.legacy_mapper,

            controller="dataset",

            action="display_application",

            dataset_id=dataset_hash,

            user_id=user_hash,

            app_name=quote_plus(self.display_application.id),

            link_name=quote_plus(self.id),

                                 app_action=None)

            app_action=None,

        )



    def get_inital_values(self, data, trans):

        if self.other_values:

lib/galaxy/web/__init__.py

+27 −9
Original line number Diff line number Diff line
@@ -2,7 +2,10 @@ 
The Galaxy web application framework

"""



from .framework import url_for

from .framework import (

    legacy_url_for,

    url_for,

)

from .framework.base import httpexceptions

from .framework.decorators import (

    do_not_cache,
@@ -25,11 +28,26 @@ from .framework.decorators import ( 
    require_login,

)



__all__ = ('do_not_cache', 'error', 'expose', 'expose_api',

        'expose_api_anonymous', 'expose_api_anonymous_and_sessionless',

        'expose_api_raw', 'expose_api_raw_anonymous',

        'expose_api_raw_anonymous_and_sessionless',

        'format_return_as_json', 'httpexceptions', 'json', 'json_pretty',

        'legacy_expose_api', 'legacy_expose_api_anonymous',

        'legacy_expose_api_raw', 'legacy_expose_api_raw_anonymous',

        'require_admin', 'require_login', 'url_for')
 
__all__ = (

    "do_not_cache",

    "error",

    "expose",

    "expose_api",

    "expose_api_anonymous",

    "expose_api_anonymous_and_sessionless",

    "expose_api_raw",

    "expose_api_raw_anonymous",

    "expose_api_raw_anonymous_and_sessionless",

    "format_return_as_json",

    "httpexceptions",

    "json",

    "json_pretty",

    "legacy_expose_api",

    "legacy_expose_api_anonymous",

    "legacy_expose_api_raw",

    "legacy_expose_api_raw_anonymous",

    "require_admin",

    "require_login",

    "legacy_url_for",

    "url_for",

)

lib/galaxy/web/framework/__init__.py

+11 −0
Original line number Diff line number Diff line
@@ -2,6 +2,8 @@ 
Galaxy web application framework

"""



from routes import request_config



from . import base



DEPRECATED_URL_ATTRIBUTE_MESSAGE = "*deprecated attribute, URL not filled in by server*"
@@ -19,4 +21,13 @@ def handle_url_for(*args, **kwargs) -> str: 
        return DEPRECATED_URL_ATTRIBUTE_MESSAGE





def legacy_url_for(mapper, *args, **kwargs) -> str:

    """

    Re-establishes the mapper for legacy WSGI routes.

    """

    rc = request_config()

    rc.mapper = mapper

    return base.routes.url_for(*args, **kwargs)





url_for = handle_url_for

lib/galaxy/webapps/galaxy/buildapp.py

+1 −0
Original line number Diff line number Diff line
@@ -205,6 +205,7 @@ def app_pair(global_conf, load_app_kwds=None, wsgi_preflight=True, **kwargs): 
    # ==== Done

    # Indicate that all configuration settings have been provided

    webapp.finalize_config()

    app.legacy_mapper = webapp.mapper



    # Wrap the webapp in some useful middleware

    if kwargs.get('middleware', True):