Commit 52c69e6a authored by Matthias Bernt's avatar Matthias Bernt
Browse files

register datatype conversions for lexicmap_index

parent 4225e4b0

lib/galaxy/config/sample/datatypes_conf.xml.sample

+2 −0
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@@ -329,6 +329,7 @@ 
    <datatype extension='qiime2.tabular' type="galaxy.datatypes.qiime2:QIIME2Metadata" display_in_upload="true"/>

    <datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true">

        <converter file="archive_to_directory.xml" target_datatype="directory" />

        <converter file="archive_to_directory.xml" target_datatype="lexicmap_index"/>

    </datatype>

    <datatype extension="ncbi_genome_dataset.zip" type="galaxy.datatypes.binary:CompressedZipArchive" subclass="true" display_in_upload="true"/>

    <datatype extension="zarr.zip" type="galaxy.datatypes.binary:CompressedZarrZipArchive" display_in_upload="true">
@@ -339,6 +340,7 @@ 
    </datatype>

    <datatype extension="tar" auto_compressed_types="gz,bz2" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true">

      <converter file="archive_to_directory.xml" target_datatype="directory"/>

      <converter file="archive_to_directory.xml" target_datatype="lexicmap_index"/>

    </datatype>

    <datatype extension="directory" type="galaxy.datatypes.data:Directory"/>

    <datatype extension="bwa_mem2_index" display_in_upload="true" type="galaxy.datatypes.data:Directory" subclass="true"/>

lib/galaxy/datatypes/converters/archive_to_directory.xml

+1 −0
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@@ -22,6 +22,7 @@ 
            <option value="directory">directory</option>

            <option value="zarr">zarr</option>

            <option value="ome_zarr">ome_zarr</option>

            <option value="lexicmap_index">lexicmap_index</option>

        </param>

    </inputs>

    <outputs provided_metadata_file="metadata_json">