Unverified Commit 4ecd09e4 authored by mvdbeek's avatar mvdbeek
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Finalize notes

parent 7ee32471

doc/source/releases/22.01.rst

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22.01

===============================



.. announce_start



Enhancements

-------------------------------



.. major_feature





.. feature



* Swap to Webpack5

  `Pull Request 11710`_

* Remote / Late evaluation of tools
@@ -62,10 +55,6 @@ Enhancements 
  `Pull Request 13175`_

* Use Gravity to run Galaxy

  `Pull Request 13224`_

.. enhancement_tag_viz



.. enhancement_tag_datatypes



* Add datatype iml_dataset subclassing html

  (thanks to `@knutwa-ext <https://github.com/knutwa-ext>`__).

  `Pull Request 12099`_
@@ -115,16 +104,12 @@ Enhancements 
* Add phyloseq datatype

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13462`_

.. enhancement_tag_tools



* Allow any format in export tool

  (thanks to `@astrovsky01 <https://github.com/astrovsky01>`__).

  `Pull Request 13151`_

* Add bioconductor as valid xref for tools

  (thanks to `@bgruening <https://github.com/bgruening>`__).

  `Pull Request 13268`_

.. enhancement_tag_workflows



* Test cases to verify only admins can import workflows from paths.

  `Pull Request 12513`_

* Remove deprecated workflow run path through the API.
@@ -138,8 +123,6 @@ Enhancements 
* Enable macros for workflow scheduler config

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13167`_

.. enhancement_tag_ui



* Remove history service worker

  `Pull Request 12510`_

* Implement fastAPI prefix handling, run selenium tests against prefix
@@ -148,12 +131,8 @@ Enhancements 
  `Pull Request 13237`_

* Fix toolbox cache

  `Pull Request 13333`_

.. enhancement_tag_jobs



* Limit maximum number of discovered files per job

  `Pull Request 13170`_

.. enhancement_tag_admin



* Fixes for HTML sanitization

  (thanks to `@abretaud <https://github.com/abretaud>`__).

  `Pull Request 13059`_
@@ -170,8 +149,6 @@ Enhancements 
  `Pull Request 13470`_

* Add Migrating from uWSGI to Gunicorn and FastAPI document

  `Pull Request 13480`_

.. enhancement



* Separated data PVC

  (thanks to `@almahmoud <https://github.com/almahmoud>`__).

  `Pull Request 12345`_
@@ -430,8 +407,6 @@ Enhancements 
  `Pull Request 13461`_

* Pin gravity to 0.10.0

  `Pull Request 13483`_

.. small_enhancement



* FastAPI: Histories API migration

  (thanks to `@davelopez <https://github.com/davelopez>`__).

  `Pull Request 12386`_
@@ -594,18 +569,11 @@ Enhancements 
Fixes

-------------------------------



.. major_bug





.. bug_tag_viz



* Large peptide IDs

  (thanks to `@reid-wagner <https://github.com/reid-wagner>`__).

  `Pull Request 13261`_

* Try to unit test more of DictParser in Viz component.

  `Pull Request 13385`_

.. bug_tag_datatypes



* Allow trailing semicolon in last column of gff3

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 12673`_
@@ -628,8 +596,6 @@ Fixes 
* Enable display of BAM data without sequence info

  (thanks to `@wm75 <https://github.com/wm75>`__).

  `Pull Request 13219`_

.. bug_tag_tools



* Fix containerized NCBI Datasets Genomes data source tool

  `Pull Request 12915`_

* Update interactivetool_pyiron.xml
@@ -646,8 +612,6 @@ Fixes 
* Fix `UnboundLocalError` in sort collection tool

  (thanks to `@davelopez <https://github.com/davelopez>`__).

  `Pull Request 13429`_

.. bug_tag_workflows



* Misc fixes - round 2

  (thanks to `@nsoranzo <https://github.com/nsoranzo>`__).

  `Pull Request 12982`_
@@ -666,8 +630,6 @@ Fixes 
  `Pull Request 13285`_

* Fix construction of SelectToolParameter default value

  `Pull Request 13293`_

.. bug_tag_ui



* RxJS major version upgrade, client unit testing enhancements.

  `Pull Request 12686`_

* Polyfill overhaul, fixes.
@@ -684,8 +646,6 @@ Fixes 
  `Pull Request 13225`_

* Bump nanoid from 3.1.29 to 3.2.0 in /client

  `Pull Request 13226`_

.. bug_tag_jobs



* Guard against instance of GenomeIndexToolData

  `Pull Request 12523`_

* Fix job runner shutdown
@@ -715,8 +675,6 @@ Fixes 
* Allow UNIVA destinations without runtime and memory max given in the nativespec

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 13343`_

.. bug_tag_admin



* Fix header content-length, add test for send_file

  `Pull Request 13120`_

* Add option for disabling tool shed datatypes...
@@ -727,8 +685,6 @@ Fixes 
  `Pull Request 13315`_

* Drop uWSGI from scaling documentation

  `Pull Request 13381`_

.. bug



* Reimplement collection order test, add wrong order, add `expect_test_failure` attribute

  (thanks to `@bernt-matthias <https://github.com/bernt-matthias>`__).

  `Pull Request 10304`_