Commit 47225814 authored by galaxybot's avatar galaxybot Committed by GitHub
Browse files

Update Python dependencies

parent 6564a504

lib/galaxy/dependencies/dev-requirements.txt

+19 −19
Original line number Diff line number Diff line
@@ -3,7 +3,7 @@ 
a2wsgi==1.4.1; python_full_version >= "3.6.2"

adal==1.2.7

aiofiles==0.8.0; python_version >= "3.6" and python_version < "4.0"

alabaster==0.7.12; python_version >= "3.6"

alabaster==0.7.12; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

alembic==1.8.0; python_version >= "3.7"

amqp==5.1.1; python_version >= "3.7"

anyio==3.6.1; python_version >= "3.7" and python_full_version >= "3.6.2"
@@ -16,7 +16,7 @@ async-generator==1.10; python_version >= "3.7" and python_version < "4.0" 
atomicwrites==1.4.0; python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.4.0"

attmap==0.13.2

attrs==21.4.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4.0" or python_full_version >= "3.5.0" and python_version >= "3.7" and python_version < "4.0"

babel==2.10.1; python_version >= "3.6"

babel==2.10.3; python_version >= "3.6"

bagit-profile==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"

bagit==1.8.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.6"

bcrypt==3.2.2; python_version >= "3.6"
@@ -32,7 +32,7 @@ bx-python==0.8.13; python_version >= "3.7" 
cachecontrol==0.12.11; python_version >= "3.6" and python_version < "4"

cached-property==1.5.2; python_version < "3.8" and python_version >= "3.7"

celery==5.2.7; python_version >= "3.7"

certifi==2022.5.18.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")

certifi==2022.6.15; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")

cffi==1.15.0

charset-normalizer==2.0.12; python_version >= "3.7" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") and python_full_version >= "3.5.0"

cheetah3==3.2.6.post1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
@@ -43,7 +43,7 @@ click-repl==0.2.0; python_version >= "3.7" 
click==8.1.3; python_version >= "3.7" and python_full_version >= "3.6.2" and python_full_version < "4.0.0"

cloudauthz==0.6.0

cloudbridge==3.0.0

colorama==0.4.4; sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.6.2" and platform_system == "Windows" and (python_version >= "2.7" and python_full_version < "3.0.0" and platform_system == "Windows" or python_full_version >= "3.5.0" and platform_system == "Windows") and (python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.5.0") and (python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.6" and python_full_version >= "3.5.0")

colorama==0.4.5; sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.6.2" and platform_system == "Windows" and (python_version >= "2.7" and python_full_version < "3.0.0" and platform_system == "Windows" or python_full_version >= "3.5.0" and platform_system == "Windows") and (python_version >= "3.7" and python_full_version < "3.0.0" and sys_platform == "win32" or sys_platform == "win32" and python_version >= "3.7" and python_full_version >= "3.5.0") and (python_version >= "3.6" and python_full_version < "3.0.0" and sys_platform == "win32" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") or sys_platform == "win32" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6") and python_full_version >= "3.5.0")

coloredlogs==15.0.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"

commonmark==0.9.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0"

coverage==6.4.1; python_version >= "3.7"
@@ -80,17 +80,17 @@ httpx==0.23.0; python_version >= "3.7" 
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"

idna==3.3; python_version >= "3.7" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")) and python_full_version >= "3.6.2"

imagesize==1.3.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

importlib-metadata==4.11.4; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2"

importlib-resources==5.7.1; python_version >= "3.7"

importlib-metadata==4.11.4; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7") and python_full_version >= "3.6.2" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")

importlib-resources==5.8.0; python_version >= "3.7"

iniconfig==1.1.1; python_version >= "3.7"

isa-rwval==0.10.10

isodate==0.6.1; python_version >= "3.7" and python_version < "4"

isort==5.10.1; python_full_version >= "3.6.1" and python_version < "4.0"

jinja2==3.1.2; python_version >= "3.7"

jinja2==3.1.2; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.7"

jsonref==0.2; python_version >= "3.6"

jsonschema==4.6.0; python_version >= "3.7"

junit-xml==1.9; python_version >= "3.6" and python_version < "4"

kiwisolver==1.4.2; python_version >= "3.7"

kiwisolver==1.4.3; python_version >= "3.7"

kombu==5.2.4; python_version >= "3.7"

lagom==1.7.1; python_version >= "3.6" and python_version < "4.0"

lockfile==0.12.2; python_version >= "3.6" and python_version < "4"
@@ -112,9 +112,9 @@ nose==1.3.7 
nosehtml==0.4.6

numpy==1.21.6; python_version >= "3.7" and python_version < "3.11"

oauthlib==3.2.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

outcome==1.1.0; python_version >= "3.7" and python_version < "4.0"

outcome==1.2.0; python_version >= "3.7" and python_version < "4.0"

oyaml==1.0

packaging==21.3; python_version >= "3.7"

packaging==21.3; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.7"

paramiko==2.11.0

parsley==1.3

paste==3.5.0
@@ -140,7 +140,7 @@ pydot==1.4.2; python_version >= "3.6" and python_full_version < "3.0.0" and pyth 
pyeventsystem==0.1.0

pyfaidx==0.7.0

pygithub==1.55; python_version >= "3.6"

pygments==2.12.0; python_full_version >= "3.6.3" and python_full_version < "4.0.0" and python_version >= "3.6"

pygments==2.12.0; python_full_version >= "3.6.3" and python_full_version < "4.0.0" and python_version >= "3.6" and (python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6")

pyjwt==2.4.0; python_version >= "3.6"

pykwalify==1.8.0

pylibmagic==0.2.0; python_version >= "3.7"
@@ -192,18 +192,18 @@ setuptools-scm==5.0.2; python_version >= "3.7" and python_full_version < "3.0.0" 
shellescape==3.8.1; python_version >= "3.6" and python_version < "4"

six==1.16.0; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.3.0" and python_version >= "3.7" and python_version < "4"

sniffio==1.2.0; python_version >= "3.7" and python_full_version >= "3.6.2" and python_version < "4.0"

snowballstemmer==2.2.0; python_version >= "3.6"

snowballstemmer==2.2.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

social-auth-core==4.0.3

sortedcontainers==2.4.0

sphinx-markdown-tables==0.0.15

sphinx-rtd-theme==1.0.0; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")

sphinx==5.0.1; python_version >= "3.6"

sphinxcontrib-applehelp==1.0.2; python_version >= "3.6"

sphinxcontrib-devhelp==1.0.2; python_version >= "3.6"

sphinxcontrib-htmlhelp==2.0.0; python_version >= "3.6"

sphinxcontrib-jsmath==1.0.1; python_version >= "3.6"

sphinxcontrib-qthelp==1.0.3; python_version >= "3.6"

sphinxcontrib-serializinghtml==1.1.5; python_version >= "3.6"

sphinx==5.0.2; python_version >= "3.6"

sphinxcontrib-applehelp==1.0.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sphinxcontrib-devhelp==1.0.2; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sphinxcontrib-htmlhelp==2.0.0; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sphinxcontrib-jsmath==1.0.1; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sphinxcontrib-qthelp==1.0.3; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sphinxcontrib-serializinghtml==1.1.5; python_version >= "3.6" and python_full_version < "3.0.0" or python_full_version >= "3.4.0" and python_version >= "3.6"

sqlalchemy-migrate==0.13.0

sqlalchemy==1.4.37; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.6.0")

sqlitedict==2.0.0

lib/galaxy/dependencies/pinned-lint-requirements.txt

+2 −2
Original line number Diff line number Diff line
@@ -15,13 +15,13 @@ types-contextvars==2.4.6 
types-cryptography==3.3.21

types-dataclasses==0.6.5

types-docutils==0.18.3

types-Markdown==3.3.27

types-Markdown==3.3.28

types-paramiko==2.10.0

types-pkg-resources==0.1.3

types-python-dateutil==2.8.17

types-PyYAML==6.0.8

types-requests==2.27.30

types-six==1.16.15

types-six==1.16.16

types-urllib3==1.26.15

typing_extensions==4.2.0

zipp==3.8.0

lib/galaxy/dependencies/pinned-requirements.txt

+4 −4
Original line number Diff line number Diff line
@@ -12,7 +12,7 @@ argcomplete==2.0.0; python_version >= "3.6" and python_version < "4" 
asgiref==3.5.2; python_version >= "3.7"

attmap==0.13.2

attrs==21.4.0; python_version >= "3.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version >= "3.7"

babel==2.10.1; python_version >= "3.6"

babel==2.10.3; python_version >= "3.6"

bagit-profile==1.3.1; python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4"

bagit==1.8.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.6"

bcrypt==3.2.2; python_version >= "3.6"
@@ -27,7 +27,7 @@ bx-python==0.8.13; python_version >= "3.7" 
cachecontrol==0.12.11; python_version >= "3.6" and python_version < "4"

cached-property==1.5.2; python_version < "3.8" and python_version >= "3.7"

celery==5.2.7; python_version >= "3.7"

certifi==2022.5.18.1; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")

certifi==2022.6.15; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")

cffi==1.15.0; implementation_name == "pypy" and python_version >= "3.6"

charset-normalizer==2.0.12; python_version >= "3.7" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") and python_full_version >= "3.5.0"

cheetah3==3.2.6.post1; (python_version >= "2.7" and python_full_version < "3.0.0") or (python_full_version >= "3.4.0")
@@ -38,7 +38,7 @@ click-repl==0.2.0; python_version >= "3.7" 
click==8.1.3; python_full_version >= "3.6.2" and python_full_version < "4.0.0" and python_version >= "3.7"

cloudauthz==0.6.0

cloudbridge==3.0.0

colorama==0.4.4; python_version >= "3.7" and python_full_version < "3.0.0" and platform_system == "Windows" or platform_system == "Windows" and python_version >= "3.7" and python_full_version >= "3.5.0"

colorama==0.4.5; python_version >= "3.7" and python_full_version < "3.0.0" and platform_system == "Windows" or platform_system == "Windows" and python_version >= "3.7" and python_full_version >= "3.5.0"

coloredlogs==15.0.1; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"

commonmark==0.9.1; python_full_version >= "3.6.3" and python_full_version < "4.0.0"

cryptography==37.0.2; python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")
@@ -66,7 +66,7 @@ h5py==3.7.0; python_version >= "3.7" 
humanfriendly==10.0; python_version >= "3.6" and python_full_version < "3.0.0" and python_version < "4" or python_version >= "3.6" and python_version < "4" and python_full_version >= "3.5.0"

idna==3.3; python_version >= "3.7" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "4" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4") or python_full_version >= "3.5.0" and python_version < "4" and python_version >= "3.7" and (python_version >= "2.7" and python_full_version < "3.0.0" or python_full_version >= "3.5.0" and python_version < "4")) and python_full_version >= "3.6.2"

importlib-metadata==4.11.4; python_version == "3.7" and (python_version >= "3.7" and python_full_version < "3.0.0" and python_version < "3.8" or python_full_version >= "3.6.0" and python_version < "3.8" and python_version >= "3.7")

importlib-resources==5.7.1; python_version >= "3.7"

importlib-resources==5.8.0; python_version >= "3.7"

isa-rwval==0.10.10

isodate==0.6.1; python_version >= "3.7" and python_version < "4"

jsonref==0.2; python_version >= "3.6"