Unverified Commit 43e3cc8a authored by Marius van den Beek's avatar Marius van den Beek Committed by GitHub
Browse files

Merge pull request #14162 from mvdbeek/fix_bam_native_collection_download 

[22.01] Fix collection download for bam native files
parents a6ea0a68 6b55c93d

lib/galaxy/datatypes/binary.py

+4 −2
Original line number Diff line number Diff line
@@ -432,6 +432,8 @@ class BamNative(CompressedArchive, _BamOrSam): 
        file_paths = []

        rel_paths.append(f"{name or dataset.file_name}.{dataset.extension}")

        file_paths.append(dataset.file_name)

        # We may or may not have a bam index file (BamNative doesn't have it, but also index generation may have failed)

        if dataset.metadata.bam_index:

            rel_paths.append(f"{name or dataset.file_name}.{dataset.extension}.bai")

            file_paths.append(dataset.metadata.bam_index.file_name)

        return zip(file_paths, rel_paths)