Unverified Commit 3fcd02a1 authored by Marius van den Beek's avatar Marius van den Beek Committed by GitHub
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Merge pull request #17265 from astrovsky01/fastk_datatypes 

[23.1] Add binary datatypes for intermediate output of fastk tools
parents 5597d9f7 db9cd1cd

lib/galaxy/config/sample/datatypes_conf.xml.sample

+3 −0
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@@ -210,6 +210,9 @@ 
      <display file="igv/interval_as_bed.xml" inherit="true"/>

    </datatype>

    <datatype extension="jellyfish" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" description="Jellyfish database files are k-mer counts in binary format with a readable head. They are operated on and converted to human-readable text through jellyfish commands." />

    <datatype extension="ktab" type="galaxy.datatypes.binary:Binary" subclass="true" description="A table of canonical k‑mers and their counts for the fastk toolkit." display_in_upload="true" description_url="https://github.com/thegenemyers/FASTK?tab=readme-ov-file#file-encodings"/>

    <datatype extension="hist" type="galaxy.datatypes.binary:Binary" subclass="true" description="A binary histogram file of kmers and frequencies for the fastk toolkit." display_in_upload="true" description_url="https://github.com/thegenemyers/FASTK?tab=readme-ov-file#file-encodings"/>

    <datatype extension="prof" type="galaxy.datatypes.binary:Binary" subclass="true" description="Read profile file for the fastk toolkit." display_in_upload="true" description_url="https://github.com/thegenemyers/FASTK?tab=readme-ov-file#file-encodings"/>



    <!-- ISA data types -->

    <datatype extension="isa-tab" type="galaxy.datatypes.isa:IsaTab" mimetype="application/isa-tools" display_in_upload="true" description="ISA-Tab data type." description_url="https://isa-tools.org"/>