Unverified Commit 2b2a4f88 authored by mvdbeek's avatar mvdbeek
Browse files

Strip unicode null from tool stdio 

Fixes https://github.com/galaxyproject/galaxy/issues/18437.

On the non-pulsar side we strip nulls in set_meta.
parent b4af9b39

lib/galaxy/jobs/runners/pulsar.py

+3 −2
Original line number Diff line number Diff line
@@ -57,6 +57,7 @@ from galaxy.util import ( 
    galaxy_directory,

    specs,

    string_as_bool_or_none,

    unicodify,

)



log = logging.getLogger(__name__)
@@ -649,8 +650,8 @@ class PulsarJobRunner(AsynchronousJobRunner): 
            client = self.get_client_from_state(job_state)

            run_results = client.full_status()

            remote_metadata_directory = run_results.get("metadata_directory", None)

            tool_stdout = run_results.get("stdout", "")

            tool_stderr = run_results.get("stderr", "")

            tool_stdout = unicodify(run_results.get("stdout", ""), strip_null=True)

            tool_stderr = unicodify(run_results.get("stderr", ""), strip_null=True)

            job_stdout = run_results.get("job_stdout")

            job_stderr = run_results.get("job_stderr")

            exit_code = run_results.get("returncode")