Unverified Commit 1b0b82f0 authored by Nicola Soranzo's avatar Nicola Soranzo Committed by GitHub
Browse files

Merge pull request #18510 from... 

Merge pull request #18510 from nsoranzo/release_23.2_fix_ApiBiotoolsMetadataSource._raw_get_metadata

[23.2] Handle all requests error in ``ApiBiotoolsMetadataSource._raw_get_metadata``
parents 06590c92 4ac6a1e4

lib/galaxy/tool_util/biotools/source.py

+6 −5
Original line number Diff line number Diff line
@@ -54,12 +54,13 @@ class ApiBiotoolsMetadataSource(BiotoolsMetadataSource): 


    def _raw_get_metadata(self, biotools_reference) -> Optional[str]:

        api_url = f"https://bio.tools/api/tool/{biotools_reference}?format=json"

        try:

            req = requests.get(api_url, timeout=DEFAULT_SOCKET_TIMEOUT)

            req.raise_for_status()

            req.encoding = req.apparent_encoding

        if req.status_code == 404:

            return None

        else:

            return req.text

        except Exception:

            return None



    def get_biotools_metadata(self, biotools_reference: str) -> Optional[BiotoolsEntry]:

        createfunc = functools.partial(self._raw_get_metadata, biotools_reference)