Unverified Commit 182f6c2b authored by mvdbeek's avatar mvdbeek
Browse files

Fix type, use auspice.json extension

parent e9bb3767

lib/galaxy/config/sample/datatypes_conf.xml.sample

+1 −1
Original line number Diff line number Diff line
@@ -148,7 +148,7 @@ 
    <datatype extension="vitesscejson" type="galaxy.datatypes.text:VitessceJson" mimetype="application/json" display_in_upload="True">

      <visualization plugin="vitessce" />

    </datatype>

    <dataatype extension="auspicejson" type="galaxy.datatypes.text:AuspiceJson" mimetype="application/json" display_in_upload="True" />

    <datatype extension="auspice.json" type="galaxy.datatypes.text:AuspiceJson" mimetype="application/json" display_in_upload="True" />

    <datatype extension="data_manager_json" type="galaxy.datatypes.text:DataManagerJson" mimetype="application/json" subclass="true" display_in_upload="false"/>

    <datatype extension="dbn" type="galaxy.datatypes.sequence:DotBracket" display_in_upload="true" description="Dot-Bracket format is a text-based format for storing both an RNA sequence and its corresponding 2D structure." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Dbn"/>

    <datatype extension="fai" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" description="A Fasta Index File is a text file consisting of lines each with five TAB-delimited columns : Name, Length, offset, linebases, Linewidth" description_url="http://www.htslib.org/doc/faidx.html"/>

lib/galaxy/datatypes/text.py

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@@ -707,7 +707,7 @@ class AuspiceJson(Json): 
    It uses JSON format to represent the tree structure and metadata.

    """



    file_ext = "auspicejson"

    file_ext = "auspice.json"



    def set_peek(self, dataset: DatasetProtocol, **kwd) -> None:

        super().set_peek(dataset)