Add metadata_incomplete element

                        for read_group in dataset.metadata.bam_header.get("RG", [])

                        if "ID" in read_group

                    ]

                else:

                    dataset.metadata.metadata_incomplete = True

                dataset.metadata.sort_order = bam_file.header.get("HD", {}).get("SO", None)  # type: ignore [attr-defined]

                dataset.metadata.bam_version = bam_file.header.get("HD", {}).get("VN", None)  # type: ignore [attr-defined]

        except Exception:

            # Per Dan, don't log here because doing so will cause datasets that

            # fail metadata to end in the error state

            pass

            dataset.metadata.metadata_incomplete = True

class BamNative(CompressedArchive, _BamOrSam):

        optional=True,

        no_value={},

    )

    MetadataElement(

        name="metadata_incomplete",

        default=False,

        desc="Indicates if metadata is incomplete",

        param=MetadataParameter,

        readonly=True,

        visible=False,

        optional=True,

        no_value=False,

    )

    def set_meta(self, dataset: DatasetProtocol, overwrite: bool = True, **kwd) -> None:

        _BamOrSam().set_meta(dataset, overwrite=overwrite, **kwd)