Loading lib/galaxy/datatypes/interval.py +0 −7 Original line number Diff line number Diff line Loading @@ -1760,13 +1760,6 @@ class IntervalTabix(Interval): # We don't want to have a good sniff as the index would be created before the metadata on columns is set. def sniff_prefix(self, file_prefix: FilePrefix): return False # # Check that the file is compressed with bgzip (not gzip), i.e. the # # compressed format is BGZF, as explained in # # http://samtools.github.io/hts-specs/SAMv1.pdf # with open(filename, "rb") as fh: # fh.seek(-28, 2) # last28 = fh.read() # return binascii.hexlify(last28) == b"1f8b08040000000000ff0600424302001b0003000000000000000000" # Ideally the tabix_index would be regenerated when the metadataElements are updated def set_meta(self, dataset, overwrite=True, first_line_is_header=False, metadata_tmp_files_dir=None, **kwd): Loading Loading
lib/galaxy/datatypes/interval.py +0 −7 Original line number Diff line number Diff line Loading @@ -1760,13 +1760,6 @@ class IntervalTabix(Interval): # We don't want to have a good sniff as the index would be created before the metadata on columns is set. def sniff_prefix(self, file_prefix: FilePrefix): return False # # Check that the file is compressed with bgzip (not gzip), i.e. the # # compressed format is BGZF, as explained in # # http://samtools.github.io/hts-specs/SAMv1.pdf # with open(filename, "rb") as fh: # fh.seek(-28, 2) # last28 = fh.read() # return binascii.hexlify(last28) == b"1f8b08040000000000ff0600424302001b0003000000000000000000" # Ideally the tabix_index would be regenerated when the metadataElements are updated def set_meta(self, dataset, overwrite=True, first_line_is_header=False, metadata_tmp_files_dir=None, **kwd): Loading