"Phonopy - Interactive Jupyter Notebook ORNL" is broken

The phonopy tool for the GRAVITAS LDRD was briefly working but broke (after a Galaxy update?)

/data/staging_test/32692/tool_script.sh: 10: Syntax error: end of file unexpected

error collecting job outputs

I tried debugging with a couple commits 129341bc 8ee39d8d 03bb14d1

Unfortunately, I don't have enough visibility into what's going on inside Galaxy to get this working.