ezminc: unstable-2019-03-12 -> unstable-2023-10-06; unbreak (#342963)

{ lib, stdenv, fetchFromGitHub, cmake, pkg-config, libminc, bicpl, itk, fftwFloat, gsl }:

{

  lib,

  stdenv,

  fetchFromGitHub,

  cmake,

  pkg-config,

  perl,

  libminc,

  bicpl,

  itk_5_2,

  fftwFloat,

  gsl,

}:

stdenv.mkDerivation rec {

stdenv.mkDerivation (finalAttrs: {

  pname = "EZminc";

  version = "unstable-2019-03-12";

  version = "2.2.00-unstable-2023-10-06";

  src = fetchFromGitHub {

    owner = "BIC-MNI";

    repo   = pname;

    rev    = "5e3333ee356f914d34d66d33ea8df809c7f7fa51";

    sha256 = "0wy8cppf5xpgfqvgb3mqs1cjh81n6qzkk6zxv29wvng8nar9wsy4";

    repo = "EZminc";

    rev = "5fdf112e837000d155891e423041d7065ea13c3f";

    hash = "sha256-0KdFIWRHnIHrau0ysGMVpg3oz01UdIvna1y2I4YEWJw=";

  };

  nativeBuildInputs = [ cmake pkg-config ];

  buildInputs = [ itk libminc bicpl fftwFloat gsl ];

  postPatch = ''

    patchShebangs scripts/*

  '';

  cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/cmake"

  nativeBuildInputs = [

    cmake

    pkg-config

  ];

  buildInputs = [

    itk_5_2

    libminc

    bicpl

    fftwFloat

    gsl

    perl

  ];

  cmakeFlags = [

    "-DLIBMINC_DIR=${libminc}/lib/cmake"

    "-DEZMINC_BUILD_TOOLS=TRUE"

    "-DEZMINC_BUILD_MRFSEG=TRUE"

                 "-DEZMINC_BUILD_DD=TRUE" ];

    # "-DEZMINC_BUILD_DD=TRUE" # numerous compilation issues

  ];

  doCheck = false; # test programs/data exist but no actual test harness

  meta = with lib; {

    homepage = "https://github.com/BIC-MNI/${pname}";

  meta = {

    homepage = "https://github.com/BIC-MNI/EZminc";

    description = "Collection of Perl and shell scripts for processing MINC files";

    maintainers = with maintainers; [ bcdarwin ];

    platforms = platforms.unix;

    license = licenses.free;

    broken = true;  # ITK5 compatibility issue (https://github.com/BIC-MNI/EZminc/issues/15)

    maintainers = with lib.maintainers; [ bcdarwin ];

    platforms = lib.platforms.linux; # can't detect opengl on Darwin

    license = lib.licenses.free;

  };

}

})