febio-studio: 1.6.1 -> 2.7

diff --git a/CMakeLists.txt b/CMakeLists.txt

index 7ad2c68eb2..0e3e978bd9 100644

--- a/CMakeLists.txt

+++ b/CMakeLists.txt

@@ -449,6 +449,9 @@

 	set_property(TARGET ${FBS_BIN_NAME} PROPERTY AUTOGEN_BUILD_DIR ${CMAKE_BINARY_DIR}/CMakeFiles/AutoGen/FEBioStudio_autogen)

 endif()

+include(GNUInstallDirs)

+install(TARGETS ${FBS_BIN_NAME} BUNDLE DESTINATION Applications)

+

 macro(addLib name)

 	add_library(${name} ${HDR_${name}} ${SRC_${name}})

 	set_property(TARGET ${name} PROPERTY AUTOGEN_BUILD_DIR ${CMAKE_BINARY_DIR}/CMakeFiles/AutoGen/${name}_autogen)

{

  lib,

  stdenv,

  overrideSDK,

  fetchFromGitHub,

  cmake,

  ninja,

  zlib,

  libglvnd,

  libGLU,

  wrapQtAppsHook,

  qt6Packages,

  febio,

  glew,

  sshSupport ? true,

  openssl,

  libssh,

  tetgenSupport ? true,

  tetgen,

  ffmpegSupport ? true,

  ffmpeg_4,

  ffmpeg_7,

  dicomSupport ? false,

  dcmtk,

  withModelRepo ? true,

  withCadFeatures ? false,

}:

stdenv.mkDerivation rec {

let

  stdenv' =

    if stdenv.isDarwin then

      overrideSDK stdenv {

        darwinSdkVersion = "11.0";

        darwinMinVersion = "10.15";

      }

    else

      stdenv;

in

stdenv'.mkDerivation (finalAttrs: {

  pname = "febio-studio";

  version = "1.6.1";

  version = "2.7";

  src = fetchFromGitHub {

    owner = "febiosoftware";

    repo = "FEBioStudio";

    rev = "v${version}";

    sha256 = "0r6pg49i0q9idp7pjymj7mlxd63qjvmfvg0l7fmx87y1yd2hfw4h";

    rev = "v${finalAttrs.version}";

    hash = "sha256-ggIzz6bvNjqlI8s31EVnbM0TOspBSc9/myKpWukS3MU=";

  };

  patches = [

    ./febio-studio-cmake.patch # Fix Errors that appear with certain Cmake flags

  ];

  patches = [ ./cmake-install.patch ];

  cmakeFlags =

    [

      "-DQt_Ver=5"

      "-DNOT_FIRST=On"

      "-DOpenGL_GL_PREFERENCE=GLVND"

    ]

    [ (lib.cmakeFeature "Qt_Root" "${qt6Packages.qtbase}") ]

    ++ lib.optional sshSupport "-DUSE_SSH=On"

    ++ lib.optional tetgenSupport "-DUSE_TETGEN=On"

    ++ lib.optional ffmpegSupport "-DUSE_FFMPEG=On"

    ++ lib.optional withModelRepo "-DMODEL_REPO=On"

    ++ lib.optional withCadFeatures "-DCAD_FEATURES=On";

  installPhase = ''

    runHook preInstall

    mkdir -p $out/

    cp -R bin $out/

    runHook postInstall

  '';

  nativeBuildInputs = [

    cmake

    wrapQtAppsHook

    ninja

    qt6Packages.wrapQtAppsHook

  ];

  buildInputs =

    [

      zlib

      libglvnd

      libGLU

      glew

      qt6Packages.qtbase

      febio

    ]

    ++ lib.optionals sshSupport [

      openssl

      libssh

    ]

    ++ lib.optional sshSupport openssl

    ++ lib.optional tetgenSupport tetgen

    ++ lib.optional ffmpegSupport ffmpeg_4

    ++ lib.optional ffmpegSupport ffmpeg_7

    ++ lib.optional dicomSupport dcmtk;

  meta = with lib; {

  meta = {

    description = "FEBio Suite Solver";

    mainProgram = "FEBioStudio";

    license = with licenses; [ mit ];

    license = with lib.licenses; [ mit ];

    homepage = "https://febio.org/";

    platforms = platforms.unix;

    maintainers = with maintainers; [ Scriptkiddi ];

    platforms = lib.platforms.unix;

    maintainers = with lib.maintainers; [ Scriptkiddi ];

  };

}

})

diff --git a/FEBioStudio/RepositoryPanel.cpp b/FEBioStudio/RepositoryPanel.cpp

index 382db303..314cdc68 100644

--- a/FEBioStudio/RepositoryPanel.cpp

+++ b/FEBioStudio/RepositoryPanel.cpp

@@ -1364,10 +1364,10 @@ void CRepositoryPanel::loadingPageProgress(qint64 bytesSent, qint64 bytesTotal)

 #else

-CRepositoryPanel::CRepositoryPanel(CMainWindow* pwnd, QWidget* parent){}

+CRepositoryPanel::CRepositoryPanel(CMainWindow* pwnd, QDockWidget* parent){}

 CRepositoryPanel::~CRepositoryPanel(){}

 void CRepositoryPanel::OpenLink(const QString& link) {}

-// void CRepositoryPanel::Raise() {}

+void CRepositoryPanel::Raise() {}

 void CRepositoryPanel::SetModelList(){}

 void CRepositoryPanel::ShowMessage(QString message) {}

 void CRepositoryPanel::ShowWelcomeMessage(QByteArray messages) {}

@@ -1396,6 +1396,7 @@ void CRepositoryPanel::on_actionSearch_triggered() {}

 void CRepositoryPanel::on_actionClearSearch_triggered() {}

 void CRepositoryPanel::on_actionDeleteRemote_triggered() {}

 void CRepositoryPanel::on_actionModify_triggered() {}

+void CRepositoryPanel::on_actionCopyPermalink_triggered() {}

 void CRepositoryPanel::on_treeWidget_itemSelectionChanged() {}

 void CRepositoryPanel::on_treeWidget_customContextMenuRequested(const QPoint &pos) {}

 void CRepositoryPanel::DownloadItem(CustomTreeWidgetItem *item) {}

diff --git a/FEBioStudio/WzdUpload.cpp b/FEBioStudio/WzdUpload.cpp

index 5ce74346..20062e06 100644

--- a/FEBioStudio/WzdUpload.cpp

+++ b/FEBioStudio/WzdUpload.cpp

@@ -1183,7 +1183,7 @@ void CWzdUpload::on_saveJson_triggered()

 		getProjectJson(&projectInfo);

 		QFile file(filedlg.selectedFiles()[0]);

-		file.open(QIODeviceBase::WriteOnly);

+		file.open(QIODevice::WriteOnly);

 		file.write(projectInfo);

 		file.close();

 	}

  fastp = callPackage ../applications/science/biology/fastp { };

  febio-studio = libsForQt5.callPackage ../applications/science/biology/febio-studio { };

  febio-studio = callPackage ../applications/science/biology/febio-studio { };

  flywheel-cli = callPackage ../applications/science/biology/flywheel-cli { };