Merge pull request #327718 from TomaSajt/jasp-desktop (8811094f) · Commits · mdf / nixpkgs

pkgs/by-name/ja/jasp-desktop/modules.nix

+526 −54

Original line number	Diff line number	Diff line
		{ R
		, rPackages
		, fetchFromGitHub
		, jasp-src
		, jasp-version
		{
		rPackages,
		fetchFromGitHub,
		jasp-src,
		jasp-version,
		}:

		with rPackages;
		@@ -21,7 +21,18 @@ let
		src = jasp-src;
		sourceRoot = "${jasp-src.name}/Engine/jaspGraphs";

		propagatedBuildInputs = [ ggplot2 gridExtra gtable lifecycle jsonlite R6 RColorBrewer rlang scales viridisLite ];
		propagatedBuildInputs = [
		ggplot2
		gridExtra
		gtable
		lifecycle
		jsonlite
		R6
		RColorBrewer
		rlang
		scales
		viridisLite
		];
		};

		jaspBase = buildRPackage {
		@@ -41,7 +52,31 @@ let
		cp -r --no-preserve=all ${jaspColumnEncoder-src} inst/include/jaspColumnEncoder
		'';

		propagatedBuildInputs = [ cli codetools ggplot2 gridExtra gridGraphics jaspGraphs jsonlite lifecycle modules officer pkgbuild plyr qgraph ragg R6 Rcpp renv remotes rjson rvg svglite systemfonts withr ];
		propagatedBuildInputs = [
		cli
		codetools
		ggplot2
		gridExtra
		gridGraphics
		jaspGraphs
		jsonlite
		lifecycle
		modules
		officer
		pkgbuild
		plyr
		qgraph
		ragg
		R6
		Rcpp
		renv
		remotes
		rjson
		rvg
		svglite
		systemfonts
		withr
		];
		};

		stanova = buildRPackage {
		@@ -52,7 +87,13 @@ let
		rev = "988ad8e07cda1674b881570a85502be7795fbd4e";
		hash = "sha256-tAeHqTHao2KVRNFBDWmuF++H31aNN6O1ss1Io500QBY=";
		};
		propagatedBuildInputs = [ emmeans lme4 coda rstan MASS ];
		propagatedBuildInputs = [
		emmeans
		lme4
		coda
		rstan
		MASS
		];
		};

		bstats = buildRPackage {
		@@ -63,7 +104,11 @@ let
		rev = "42d34c18df08d233825bae34fdc0dfa0cd70ce8c";
		hash = "sha256-N2KmbTPbyvzsZTWBRE2x7bteccnzokUWDOB4mOWUdJk=";
		};
		propagatedBuildInputs = [ hypergeo purrr SuppDists ];
		propagatedBuildInputs = [
		hypergeo
		purrr
		SuppDists
		];
		};

		flexplot = buildRPackage {
		@@ -71,10 +116,28 @@ let
		src = fetchFromGitHub {
		owner = "dustinfife";
		repo = "flexplot";
		rev = "4223ad5fb56028018b964d6f9f5aa5bac8710821";
		hash = "sha256-L+Ed2bIWjq3ZIAGookp8dAjDSeldEbcwynwFVVZ9IcU=";
		rev = "303a03968f677e71c99a5e22f6352c0811b7b2fb";
		hash = "sha256-iT5CdtNk0Oi8gga76L6YtyWGACAwpN8A/yTBy7JJERc=";
		};
		propagatedBuildInputs = [ cowplot MASS tibble withr dplyr magrittr forcats purrr plyr R6 ggplot2 patchwork ggsci lme4 party mgcv rlang ];
		propagatedBuildInputs = [
		cowplot
		MASS
		tibble
		withr
		dplyr
		magrittr
		forcats
		purrr
		plyr
		R6
		ggplot2
		patchwork
		ggsci
		lme4
		party
		mgcv
		rlang
		];
		};

		# conting has been removed from CRAN
		@@ -86,10 +149,17 @@ let
		rev = "03a4eb9a687e015d602022a01d4e638324c110c8";
		hash = "sha256-Sp09YZz1WGyefn31Zy1qGufoKjtuEEZHO+wJvoLArf0=";
		};
		propagatedBuildInputs = [ mvtnorm gtools tseries coda ];
		propagatedBuildInputs = [
		mvtnorm
		gtools
		tseries
		coda
		];
		};

		buildJaspModule = name: deps: buildRPackage {
		buildJaspModule =
		name: deps:
		buildRPackage {
		name = "${name}-${jasp-version}";
		version = jasp-version;
		src = jasp-src;
		@@ -98,40 +168,442 @@ let
		};
		in
		{
		engine = { inherit jaspBase jaspGraphs; };
		engine = {
		inherit jaspBase jaspGraphs;
		};

		modules = rec {
		jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [ abtest BayesFactor conting' ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra AcceptanceSampling ];
		jaspAnova = buildJaspModule "jaspAnova" [ afex BayesFactor boot car colorspace emmeans ggplot2 jaspBase jaspDescriptives jaspGraphs jaspTTests KernSmooth matrixStats multcomp onewaytests plyr stringi stringr restriktor ];
		jaspAudit = buildJaspModule "jaspAudit" [ bstats extraDistr ggplot2 ggrepel jaspBase jaspGraphs jfa ];
		jaspBain = buildJaspModule "jaspBain" [ bain lavaan ggplot2 semPlot stringr jaspBase jaspGraphs jaspSem ];
		jaspBsts = buildJaspModule "jaspBsts" [ Boom bsts ggplot2 jaspBase jaspGraphs matrixStats reshape2 ];
		jaspCircular = buildJaspModule "jaspCircular" [ jaspBase jaspGraphs circular ggplot2 ];
		jaspCochrane = buildJaspModule "jaspCochrane" [ jaspBase jaspGraphs jaspDescriptives jaspMetaAnalysis ];
		jaspDescriptives = buildJaspModule "jaspDescriptives" [ ggplot2 ggrepel jaspBase jaspGraphs ];
		jaspDistributions = buildJaspModule "jaspDistributions" [ car fitdistrplus ggplot2 goftest gnorm jaspBase jaspGraphs MASS sgt sn ];
		jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [ BayesFactor ggplot2 jaspBase jaspGraphs metaBMA TOSTER jaspTTests ];
		jaspFactor = buildJaspModule "jaspFactor" [ ggplot2 jaspBase jaspGraphs jaspSem lavaan psych qgraph reshape2 semPlot GPArotation Rcsdp semTools ];
		jaspFrequencies = buildJaspModule "jaspFrequencies" [ abtest BayesFactor conting' multibridge ggplot2 jaspBase jaspGraphs plyr stringr vcd vcdExtra ];
		jaspJags = buildJaspModule "jaspJags" [ coda ggplot2 ggtext hexbin jaspBase jaspGraphs rjags scales stringr ];
		jaspLearnBayes = buildJaspModule "jaspLearnBayes" [ extraDistr ggplot2 HDInterval jaspBase jaspGraphs MASS MCMCpack MGLM scales ggalluvial ragg runjags ggdist png posterior ];
		jaspLearnStats = buildJaspModule "jaspLearnStats" [ extraDistr ggplot2 jaspBase jaspGraphs jaspDistributions jaspDescriptives jaspTTests ggforce tidyr igraph ];
		jaspMachineLearning = buildJaspModule "jaspMachineLearning" [ kknn AUC cluster colorspace DALEX dbscan e1071 fpc gbm Gmedian ggparty ggdendro ggnetwork ggplot2 ggrepel ggridges glmnet jaspBase jaspGraphs MASS mvnormalTest neuralnet network partykit plyr randomForest rpart ROCR Rtsne signal ];
		jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [ dplyr ggplot2 jaspBase jaspGraphs MASS metaBMA metafor psych purrr rstan stringr tibble tidyr weightr BayesTools RoBMA metamisc ggmcmc pema ];
		jaspMixedModels = buildJaspModule "jaspMixedModels" [ afex emmeans ggplot2 ggpol jaspBase jaspGraphs lme4 loo mgcv rstan rstanarm stanova withr ];
		jaspNetwork = buildJaspModule "jaspNetwork" [ bootnet BDgraph corpcor dplyr foreach ggplot2 gtools HDInterval huge IsingSampler jaspBase jaspGraphs mvtnorm qgraph reshape2 snow stringr ];
		jaspPower = buildJaspModule "jaspPower" [ pwr jaspBase jaspGraphs ];
		jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [ jaspBase jaspGraphs bsts bssm precrec reshape2 Boom lubridate prophet BART EBMAforecast imputeTS ];
		jaspProcess = buildJaspModule "jaspProcess" [ dagitty ggplot2 ggraph jaspBase jaspGraphs ];
		jaspProphet = buildJaspModule "jaspProphet" [ rstan ggplot2 jaspBase jaspGraphs prophet scales ];
		jaspQualityControl = buildJaspModule "jaspQualityControl" [ car cowplot daewr desirability DoE_base EnvStats FAdist fitdistrplus FrF2 ggplot2 ggrepel goftest ggpp irr jaspBase jaspDescriptives jaspGraphs mle_tools psych qcc rsm Rspc tidyr tibble vipor weibullness ];
		jaspRegression = buildJaspModule "jaspRegression" [ BAS boot bstats combinat emmeans ggplot2 ggrepel hmeasure jaspAnova jaspBase jaspDescriptives jaspGraphs jaspTTests lmtest logistf MASS matrixStats mdscore ppcor purrr Rcpp statmod VGAM ];
		jaspReliability = buildJaspModule "jaspReliability" [ Bayesrel coda ggplot2 ggridges irr jaspBase jaspGraphs LaplacesDemon lme4 MASS psych ];
		jaspRobustTTests = buildJaspModule "jaspRobustTTests" [ RoBTT ggplot2 jaspBase jaspGraphs ];
		jaspSem = buildJaspModule "jaspSem" [ forcats ggplot2 jaspBase jaspGraphs lavaan cSEM reshape2 semPlot semTools stringr tibble tidyr ];
		jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [ BayesFactor bstats jaspBase jaspFrequencies jaspGraphs jaspRegression jaspTTests jaspAnova jaspDescriptives SuppDists bayesplay ];
		jaspSurvival = buildJaspModule "jaspSurvival" [ survival survminer jaspBase jaspGraphs ];
		jaspTTests = buildJaspModule "jaspTTests" [ BayesFactor car ggplot2 jaspBase jaspGraphs logspline plotrix plyr ];
		jaspTimeSeries = buildJaspModule "jaspTimeSeries" [ jaspBase jaspGraphs forecast ];
		jaspVisualModeling = buildJaspModule "jaspVisualModeling" [ flexplot jaspBase jaspGraphs ];
		jaspAcceptanceSampling = buildJaspModule "jaspAcceptanceSampling" [
		abtest
		BayesFactor
		conting'
		ggplot2
		jaspBase
		jaspGraphs
		plyr
		stringr
		vcd
		vcdExtra
		AcceptanceSampling
		];
		jaspAnova = buildJaspModule "jaspAnova" [
		afex
		BayesFactor
		boot
		car
		colorspace
		emmeans
		effectsize
		ggplot2
		jaspBase
		jaspDescriptives
		jaspGraphs
		jaspTTests
		KernSmooth
		matrixStats
		multcomp
		multcompView
		mvShapiroTest
		onewaytests
		plyr
		stringi
		stringr
		restriktor
		];
		jaspAudit = buildJaspModule "jaspAudit" [
		bstats
		extraDistr
		ggplot2
		ggrepel
		jaspBase
		jaspGraphs
		jfa
		];
		jaspBain = buildJaspModule "jaspBain" [
		bain
		lavaan
		ggplot2
		semPlot
		stringr
		jaspBase
		jaspGraphs
		jaspSem
		];
		jaspBsts = buildJaspModule "jaspBsts" [
		Boom
		bsts
		ggplot2
		jaspBase
		jaspGraphs
		matrixStats
		reshape2
		];
		jaspCircular = buildJaspModule "jaspCircular" [
		jaspBase
		jaspGraphs
		circular
		ggplot2
		];
		jaspCochrane = buildJaspModule "jaspCochrane" [
		jaspBase
		jaspGraphs
		jaspDescriptives
		jaspMetaAnalysis
		];
		jaspDescriptives = buildJaspModule "jaspDescriptives" [
		ggplot2
		ggrepel
		jaspBase
		jaspGraphs
		jaspTTests
		forecast
		flexplot
		ggrain
		ggpp
		ggtext
		dplyr
		];
		jaspDistributions = buildJaspModule "jaspDistributions" [
		car
		fitdistrplus
		ggplot2
		goftest
		gnorm
		jaspBase
		jaspGraphs
		MASS
		sgt
		sn
		];
		jaspEquivalenceTTests = buildJaspModule "jaspEquivalenceTTests" [
		BayesFactor
		ggplot2
		jaspBase
		jaspGraphs
		metaBMA
		TOSTER
		jaspTTests
		];
		jaspFactor = buildJaspModule "jaspFactor" [
		ggplot2
		jaspBase
		jaspGraphs
		jaspSem
		lavaan
		psych
		qgraph
		reshape2
		semPlot
		GPArotation
		Rcsdp
		semTools
		];
		jaspFrequencies = buildJaspModule "jaspFrequencies" [
		abtest
		BayesFactor
		bridgesampling
		conting'
		multibridge
		ggplot2
		jaspBase
		jaspGraphs
		plyr
		stringr
		vcd
		vcdExtra
		];
		jaspJags = buildJaspModule "jaspJags" [
		coda
		ggplot2
		ggtext
		hexbin
		jaspBase
		jaspGraphs
		rjags
		runjags
		scales
		stringr
		];
		jaspLearnBayes = buildJaspModule "jaspLearnBayes" [
		extraDistr
		ggplot2
		HDInterval
		jaspBase
		jaspGraphs
		MASS
		MCMCpack
		MGLM
		scales
		ggalluvial
		ragg
		rjags
		runjags
		ggdist
		png
		posterior
		];
		jaspLearnStats = buildJaspModule "jaspLearnStats" [
		extraDistr
		ggplot2
		jaspBase
		jaspGraphs
		jaspDistributions
		jaspDescriptives
		jaspTTests
		ggforce
		tidyr
		igraph
		];
		jaspMachineLearning = buildJaspModule "jaspMachineLearning" [
		kknn
		AUC
		cluster
		colorspace
		DALEX
		dbscan
		e1071
		fpc
		gbm
		Gmedian
		ggparty
		ggdendro
		ggnetwork
		ggplot2
		ggrepel
		ggridges
		glmnet
		jaspBase
		jaspGraphs
		MASS
		mvnormalTest
		neuralnet
		network
		partykit
		plyr
		randomForest
		rpart
		ROCR
		Rtsne
		signal
		];
		jaspMetaAnalysis = buildJaspModule "jaspMetaAnalysis" [
		dplyr
		ggplot2
		jaspBase
		jaspGraphs
		MASS
		metaBMA
		metafor
		psych
		purrr
		rstan
		stringr
		tibble
		tidyr
		weightr
		BayesTools
		RoBMA
		metamisc
		ggmcmc
		pema
		];
		jaspMixedModels = buildJaspModule "jaspMixedModels" [
		afex
		emmeans
		ggplot2
		ggpol
		jaspBase
		jaspGraphs
		lme4
		loo
		mgcv
		rstan
		rstanarm
		stanova
		withr
		];
		jaspNetwork = buildJaspModule "jaspNetwork" [
		bootnet
		BDgraph
		corpcor
		dplyr
		foreach
		ggplot2
		gtools
		HDInterval
		huge
		IsingSampler
		jaspBase
		jaspGraphs
		mvtnorm
		qgraph
		reshape2
		snow
		stringr
		];
		jaspPower = buildJaspModule "jaspPower" [
		pwr
		jaspBase
		jaspGraphs
		];
		jaspPredictiveAnalytics = buildJaspModule "jaspPredictiveAnalytics" [
		jaspBase
		jaspGraphs
		bsts
		bssm
		precrec
		reshape2
		Boom
		lubridate
		prophet
		BART
		EBMAforecast
		imputeTS
		];
		jaspProcess = buildJaspModule "jaspProcess" [
		blavaan
		dagitty
		ggplot2
		ggraph
		jaspBase
		jaspGraphs
		jaspJags
		runjags
		];
		jaspProphet = buildJaspModule "jaspProphet" [
		rstan
		ggplot2
		jaspBase
		jaspGraphs
		prophet
		scales
		];
		jaspQualityControl = buildJaspModule "jaspQualityControl" [
		car
		cowplot
		daewr
		desirability
		DoE_base
		EnvStats
		FAdist
		fitdistrplus
		FrF2
		ggplot2
		ggrepel
		goftest
		ggpp
		irr
		jaspBase
		jaspDescriptives
		jaspGraphs
		mle_tools
		psych
		qcc
		rsm
		Rspc
		tidyr
		tibble
		vipor
		weibullness
		];
		jaspRegression = buildJaspModule "jaspRegression" [
		BAS
		boot
		bstats
		combinat
		emmeans
		ggplot2
		ggrepel
		hmeasure
		jaspAnova
		jaspBase
		jaspDescriptives
		jaspGraphs
		jaspTTests
		lmtest
		logistf
		MASS
		matrixStats
		mdscore
		ppcor
		purrr
		Rcpp
		statmod
		VGAM
		];
		jaspReliability = buildJaspModule "jaspReliability" [
		Bayesrel
		coda
		ggplot2
		ggridges
		irr
		jaspBase
		jaspGraphs
		LaplacesDemon
		lme4
		MASS
		psych
		];
		jaspRobustTTests = buildJaspModule "jaspRobustTTests" [
		RoBTT
		ggplot2
		jaspBase
		jaspGraphs
		];
		jaspSem = buildJaspModule "jaspSem" [
		forcats
		ggplot2
		jaspBase
		jaspGraphs
		lavaan
		cSEM
		reshape2
		semPlot
		semTools
		stringr
		tibble
		tidyr
		];
		jaspSummaryStatistics = buildJaspModule "jaspSummaryStatistics" [
		BayesFactor
		bstats
		jaspBase
		jaspFrequencies
		jaspGraphs
		jaspRegression
		jaspTTests
		jaspAnova
		jaspDescriptives
		SuppDists
		bayesplay
		];
		jaspSurvival = buildJaspModule "jaspSurvival" [
		survival
		survminer
		jaspBase
		jaspGraphs
		];
		jaspTTests = buildJaspModule "jaspTTests" [
		BayesFactor
		car
		ggplot2
		jaspBase
		jaspGraphs
		logspline
		plotrix
		plyr
		];
		jaspTimeSeries = buildJaspModule "jaspTimeSeries" [
		jaspBase
		jaspGraphs
		jaspDescriptives
		forecast
		];
		jaspVisualModeling = buildJaspModule "jaspVisualModeling" [
		flexplot
		jaspBase
		jaspGraphs
		jaspDescriptives
		];
		};
		}

pkgs/by-name/ja/jasp-desktop/package.nix

+36 −34

Original line number	Diff line number	Diff line
		{ lib
		, stdenv
		, fetchFromGitHub
		, callPackage
		, buildEnv
		, linkFarm
		, substituteAll
		, R
		, rPackages
		, cmake
		, ninja
		, pkg-config
		, boost
		, libarchive
		, readstat
		, qt6
		{
		lib,
		stdenv,
		fetchFromGitHub,
		buildEnv,
		linkFarm,
		substituteAll,
		R,
		rPackages,
		cmake,
		ninja,
		pkg-config,
		boost,
		libarchive,
		readstat,
		qt6,
		}:

		let
		version = "0.18.3";
		version = "0.19.0";

		src = fetchFromGitHub {
		owner = "jasp-stats";
		repo = "jasp-desktop";
		rev = "v${version}";
		hash = "sha256-eKBxCIamNhUig+0vUEqXYbPjiaOsZk6QnOw8cnpjKFY=";
		hash = "sha256-G84bmR+40W9RV+OIXYuMmwdEFE0iPMp/wEOcRHYUoj8=";
		fetchSubmodules = true;
		};

		inherit (callPackage ./modules.nix {
		moduleSet = import ./modules.nix {
		inherit fetchFromGitHub rPackages;
		jasp-src = src;
		jasp-version = version;
		}) engine modules;
		};

		inherit (moduleSet) engine modules;

		# Merges ${R}/lib/R with all used R packages (even propagated ones)
		customREnv = buildEnv {
		@@ -42,8 +45,12 @@ let
		] ++ lib.attrValues modules;
		};

		modulesDir = linkFarm "jasp-${version}-modules"
		(lib.mapAttrsToList (name: drv: { name = name; path = "${drv}/library"; }) modules);
		modulesDir = linkFarm "jasp-${version}-modules" (
		lib.mapAttrsToList (name: drv: {
		name = name;
		path = "${drv}/library";
		}) modules
		);
		in
		stdenv.mkDerivation {
		pname = "jasp-desktop";
		@@ -66,9 +73,6 @@ stdenv.mkDerivation {
		"-DCUSTOM_R_PATH=${customREnv}"
		];

		# necessary for R 4.4.0
		hardeningDisable = [ "format" ];

		nativeBuildInputs = [
		cmake
		ninja
		@@ -81,13 +85,12 @@ stdenv.mkDerivation {
		boost
		libarchive
		readstat
		] ++ (with qt6; [
		qtbase
		qtdeclarative
		qtwebengine
		qtsvg
		qt5compat
		]);
		qt6.qtbase
		qt6.qtdeclarative
		qt6.qtwebengine
		qt6.qtsvg
		qt6.qt5compat
		];

		env.NIX_LDFLAGS = "-L${rPackages.RInside}/library/RInside/lib";

		@@ -98,7 +101,7 @@ stdenv.mkDerivation {
		# Remove flatpak proxy script
		rm $out/bin/org.jaspstats.JASP
		substituteInPlace $out/share/applications/org.jaspstats.JASP.desktop \
		--replace "Exec=org.jaspstats.JASP" "Exec=JASP"
		--replace-fail "Exec=org.jaspstats.JASP" "Exec=JASP"

		# symlink modules from the store
		ln -s ${modulesDir} $out/Modules
		@@ -121,4 +124,3 @@ stdenv.mkDerivation {
		platforms = lib.platforms.linux;
		};
		}

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