Sage: Fix on Darwin (#264126)

{ stdenv

, lib

, fetchpatch

, fetchurl

, makeWrapper

, readline

    sha256 = "sha256-ZyMIdF63iiIklO6N1nhu3VvDMUVvzGRWrAZL2yjVh6g=";

  };

  patches = [

    (fetchpatch {

      url = "https://github.com/gap-system/gap/commit/c786e229413a44b7462196716b99ae9bb0071f4c.patch";

      hash = "sha256-g3jrEMSavHAUKlHoPqWmOw49hWHU+29SA788Klnr0Uw=";

    })

  ];

  # remove all non-essential packages (which take up a lot of space)

  preConfigure = lib.optionalString (!keepAll) (removeNonWhitelistedPkgs packagesToKeep) + ''

    patchShebangs .

{lib, stdenv, fetchurl, gmp, mpir, cddlib}:

{lib, stdenv, fetchpatch, fetchurl, gmp, mpir, cddlib}:

stdenv.mkDerivation rec {

  pname = "gfan";

  version = "0.6.2";

  patches = [

    ./gfan-0.6.2-cddlib-prefix.patch

  ] ++ lib.optionals (stdenv.cc.isClang) [

    (fetchpatch {

      name = "clang-fix-miscompilation.patch";

      url = "https://raw.githubusercontent.com/sagemath/sage/eea1f59394a5066e9acd8ae39a90302820914ee3/build/pkgs/gfan/patches/nodel.patch";

      sha256 = "sha256-RrncSgFyrBIk/Bwe3accxiJ2rpOSJKQ84cV/uBvQsDc=";

    })

  ];

  postPatch = lib.optionalString stdenv.cc.isClang ''

stdenv.mkDerivation rec {

  pname = "giac${lib.optionalString enableGUI "-with-xcas"}";

  version = "1.9.0-43"; # TODO try to remove preCheck phase on upgrade

  version = "1.9.0-993"; # TODO try to remove preCheck phase on upgrade

  src = fetchurl {

    url = "https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/stable/main/source/giac_${version}.tar.gz";

    sha256 = "sha256-466jB8ZRqHkU5XCY+j0Fh7Dq/mMaOu10rHECKbtNGrs=";

    sha256 = "sha256-pqytFWrSWfEwQqRdRbaigGCq68s8mdgj2j8M+kclslE=";

  };

  patches = [

    ./remove-old-functional-patterns.patch

    ./fix-fltk-guard.patch

    (fetchpatch {

      name = "pari_2_15.patch";

      url = "https://raw.githubusercontent.com/sagemath/sage/07a2afd65fb4b0a1c9cbc43ede7d4a18c921a000/build/pkgs/giac/patches/pari_2_15.patch";

      sha256 = "sha256-Q3xBFED7XEAyNz6AHjzt63XtospmdGAIdS6iPq1C2UE=";

    })

    (fetchpatch {

      name = "pari_2_11.patch";

      url = "https://raw.githubusercontent.com/sagemath/sage/21ba7540d385a9864b44850d6987893dfa16bfc0/build/pkgs/giac/patches/pari_2_11.patch";

      sha256 = "sha256-vEo/5MNzMdYRPWgLFPsDcMT1W80Qzj4EPBjx/B8j68k=";

      name = "infinity.patch";

      url = "https://github.com/geogebra/giac/commit/851c2cd91e879c79d6652f8a5d5bed03b65c6d39.patch";

      sha256 = "sha256-WJRT2b8I9kgAkRuIugMiXoF4hT7yR7qyad8A6IspNTM=";

      stripLen = 5;

      extraPrefix = "/src/";

      excludes = [ "src/kdisplay.cc" ];

    })

    # giac calls scanf/printf with non-constant first arguments, which

      sha256 = "sha256-r+M+9MRPRqhHcdhYWI6inxyNvWbXUbBcPCeDY7aulvk=";

    })

    # increase pari stack size for test chk_fhan{4,6}

    ./increase-pari-stack-size.patch

    # issue with include path precedence

    (fetchpatch {

      name = "fix_implicit_declaration.patch";

      url = "https://salsa.debian.org/science-team/giac/-/raw/c05ae9b9e74d3c6ee6411d391071989426a76201/debian/patches/fix_implicit_declaration.patch";

      sha256 = "sha256-ompUceYJLiL0ftfjBkIMcYvX1YqG2/XA7e1yDyFY0IY=";

    })

  ] ++ lib.optionals (!enableGUI) [

    # when enableGui is false, giac is compiled without fltk. That

    # means some outputs differ in the make check. Patch around this:

    # when fltk is disabled. disable these tests for now.

    echo > check/chk_fhan2

    echo > check/chk_fhan9

  '' + lib.optionalString (stdenv.isDarwin) ''

    # these cover a known regression in giac, likely due to how pari state

    # is shared between multiple giac instances (see pari.cc.old).

    # see https://github.com/NixOS/nixpkgs/pull/264126 for more information

    echo > check/chk_fhan4

    echo > check/chk_fhan6

  '';

  enableParallelBuilding = true;

    "--enable-ao" "--enable-ecm" "--enable-glpk"

  ] ++ lib.optionals enableGUI [

    "--enable-gui" "--with-x"

  ] ++ lib.optionals stdenv.isDarwin [

    "--disable-nls"

  ] ++ lib.optionals (!enableGUI) [

    "--disable-fltk"

  ] ++ lib.optionals (!enableMicroPy) [

    homepage = "https://www-fourier.ujf-grenoble.fr/~parisse/giac.html";

    license = licenses.gpl3Plus;

    platforms = platforms.linux ++ (optionals (!enableGUI) platforms.darwin);

    broken = stdenv.isDarwin && stdenv.isAarch64;

    maintainers = [ maintainers.symphorien ];

  };

}

From c7eafa2d7bde0d735b125912542acec2d5896c17 Mon Sep 17 00:00:00 2001

From: George Huebner <george@feyor.sh>

Date: Sat, 20 Jul 2024 02:31:20 -0500

Subject: [PATCH 3/4] remove erroneous HAVE_LIBFLTK guard

---

 src/icas.cc | 4 ----

 1 file changed, 4 deletions(-)

diff --git a/src/icas.cc b/src/icas.cc

index f91885b..17a0373 100644

--- a/src/icas.cc

+++ b/src/icas.cc

@@ -2407,11 +2407,7 @@ int main(int ARGC, char *ARGV[]){

 #ifdef __APPLE__

       startc=clock();

 #endif

-#ifdef HAVE_LIBFLTK

       xcas::icas_eval(gq,e,reading_file,filename,contextptr);

-#else

-      e=eval(gq,1,contextptr);

-#endif

 #ifdef __APPLE__

       startc=clock()-startc;

 #endif

-- 

2.44.1

diff -ur a/check/chk_fhan4 b/check/chk_fhan4

--- a/check/chk_fhan4	2018-03-13 19:27:11.000000000 +0100

+++ b/check/chk_fhan4	2023-05-20 16:31:30.349063063 +0200

@@ -1,4 +1,5 @@

 #! /bin/sh

 unset LANG

+export PARI_SIZE=2048000

 ../src/icas TP04-sol.cas > TP04.tst

 diff TP04.tst TP04-sol.cas.out1

diff -ur a/check/chk_fhan6 b/check/chk_fhan6

--- a/check/chk_fhan6	2018-03-13 19:27:21.000000000 +0100

+++ b/check/chk_fhan6	2023-05-20 16:32:04.199407065 +0200

@@ -1,4 +1,5 @@

 #! /bin/sh

 unset LANG

+export PARI_SIZE=2048000

 ../src/icas TP06-sol.cas > TP06.tst

 diff TP06.tst TP06-sol.cas.out1