Loading doc/languages-frameworks/r.section.md +13 −10 Original line number Diff line number Diff line Loading @@ -104,24 +104,27 @@ directory and executed as follows: ```bash nix-shell generate-shell.nix Rscript generate-r-packages.R cran > cran-packages.nix.new mv cran-packages.nix.new cran-packages.nix Rscript generate-r-packages.R cran > cran-packages.json.new mv cran-packages.json.new cran-packages.json Rscript generate-r-packages.R bioc > bioc-packages.nix.new mv bioc-packages.nix.new bioc-packages.nix Rscript generate-r-packages.R bioc > bioc-packages.json.new mv bioc-packages.json.new bioc-packages.json Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.json.new mv bioc-annotation-packages.json.new bioc-annotation-packages.json Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.json.new mv bioc-experiment-packages.json.new bioc-experiment-packages.json ``` `generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefore `generate-r-packages.R <repo>` reads `<repo>-packages.json`, therefore the renaming. The contents of a generated `*-packages.json` file will be used to create a package derivation for each R package listed in the file. Some packages require overrides to specify external dependencies or other patches and special requirements. These overrides are specified in the `pkgs/development/r-modules/default.nix` file. As the `*-packages.nix` `pkgs/development/r-modules/default.nix` file. As the `*-packages.json` contents are automatically generated it should not be edited and broken builds should be addressed using overrides. Loading
doc/languages-frameworks/r.section.md +13 −10 Original line number Diff line number Diff line Loading @@ -104,24 +104,27 @@ directory and executed as follows: ```bash nix-shell generate-shell.nix Rscript generate-r-packages.R cran > cran-packages.nix.new mv cran-packages.nix.new cran-packages.nix Rscript generate-r-packages.R cran > cran-packages.json.new mv cran-packages.json.new cran-packages.json Rscript generate-r-packages.R bioc > bioc-packages.nix.new mv bioc-packages.nix.new bioc-packages.nix Rscript generate-r-packages.R bioc > bioc-packages.json.new mv bioc-packages.json.new bioc-packages.json Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.nix.new mv bioc-annotation-packages.nix.new bioc-annotation-packages.nix Rscript generate-r-packages.R bioc-annotation > bioc-annotation-packages.json.new mv bioc-annotation-packages.json.new bioc-annotation-packages.json Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.nix.new mv bioc-experiment-packages.nix.new bioc-experiment-packages.nix Rscript generate-r-packages.R bioc-experiment > bioc-experiment-packages.json.new mv bioc-experiment-packages.json.new bioc-experiment-packages.json ``` `generate-r-packages.R <repo>` reads `<repo>-packages.nix`, therefore `generate-r-packages.R <repo>` reads `<repo>-packages.json`, therefore the renaming. The contents of a generated `*-packages.json` file will be used to create a package derivation for each R package listed in the file. Some packages require overrides to specify external dependencies or other patches and special requirements. These overrides are specified in the `pkgs/development/r-modules/default.nix` file. As the `*-packages.nix` `pkgs/development/r-modules/default.nix` file. As the `*-packages.json` contents are automatically generated it should not be edited and broken builds should be addressed using overrides.
