Unverified Commit 64144b2f authored by Mario Rodas's avatar Mario Rodas Committed by GitHub
Browse files

Merge pull request #277954 from bcdarwin/python3-highdicom 

python311Packages.highdicom: init at 0.22.0
parents d4f14901 87e591d6

pkgs/development/python-modules/highdicom/default.nix

0 → 100644
+79 −0
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, fetchFromGitHub

, pythonOlder

, pytestCheckHook

, numpy

, pillow

, pillow-jpls

, pydicom

, pylibjpeg

, pylibjpeg-libjpeg

}:



let

  test_data = fetchFromGitHub {

    owner = "pydicom";

    repo = "pydicom-data";

    rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";

    hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";

  };

in

buildPythonPackage rec {

  pname = "highdicom";

  version = "0.22.0";

  pyproject = true;



  disabled = pythonOlder "3.6";



  src = fetchFromGitHub {

    owner = "MGHComputationalPathology";

    repo = "highdicom";

    rev = "refs/tags/v${version}";

    hash = "sha256-KHSJWEnm8u0xHkeeLF/U7MY4FfiWb6Q0GQQy2w1mnKw=";

  };



  propagatedBuildInputs = [

    numpy

    pillow

    pillow-jpls

    pydicom

  ];



  passthru.optional-dependencies = {

    libjpeg = [

      pylibjpeg

      pylibjpeg-libjpeg

      #pylibjpeg-openjpeg  # not in nixpkgs yet

    ];

  };



  nativeCheckInputs = [

    pytestCheckHook

  ] ++ passthru.optional-dependencies.libjpeg;

  preCheck = ''

    export HOME=$TMP/test-home

    mkdir -p $HOME/.pydicom/

    ln -s ${test_data}/data_store/data $HOME/.pydicom/data

  '';



  pythonImportsCheck = [

    "highdicom"

    "highdicom.legacy"

    "highdicom.ann"

    "highdicom.ko"

    "highdicom.pm"

    "highdicom.pr"

    "highdicom.seg"

    "highdicom.sr"

    "highdicom.sc"

  ];



  meta = with lib; {

    description = "High-level DICOM abstractions for Python";

    homepage = "https://highdicom.readthedocs.io";

    changelog = "https://github.com/ImagingDataCommons/highdicom/releases/tag/v${version}";

    license = licenses.mit;

    maintainers = with maintainers; [ bcdarwin ];

  };

}

pkgs/development/python-modules/pillow-jpls/default.nix

0 → 100644
+82 −0
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, fetchFromGitHub

, fetchPypi

, fetchpatch

, pythonOlder

, pytestCheckHook

, cmake

, ninja

, scikit-build-core

, charls

, eigen

, fmt

, numpy

, pillow

, pybind11

, setuptools

, pathspec

, pyproject-metadata

, setuptools_scm

}:



buildPythonPackage rec {

  pname = "pillow-jpls";

  version = "1.3.2";

  pyproject = true;



  disabled = pythonOlder "3.7";



  src = fetchFromGitHub {

    owner = "planetmarshall";

    repo = "pillow-jpls";

    rev = "refs/tags/v${version}";

    hash = "sha256-Rc4/S8BrYoLdn7eHDBaoUt1Qy+h0TMAN5ixCAuRmfPU=";

  };



  postPatch = ''

    substituteInPlace pyproject.toml --replace '"conan~=2.0.16",' ""

  '';



  nativeBuildInputs = [

    cmake

    ninja

    pybind11

    scikit-build-core

    setuptools

    setuptools_scm

  ];

  buildInputs = [

    charls

    eigen

    fmt

  ];

  propagatedBuildInputs = [

    numpy

    pillow

    pathspec

    pyproject-metadata

  ];



  pypaBuildFlags = [ "-C" "cmake.args='--preset=sysdeps'" ];

  dontUseCmakeConfigure = true;



  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;



  checkInputs = [

    pytestCheckHook

  ];

  # prevent importing from build during test collection:

  preCheck = ''rm -rf pillow_jpls'';



  pythonImportsCheck = [

    "pillow_jpls"

  ];



  meta = with lib; {

    description = "A JPEG-LS plugin for the Python Pillow library";

    homepage = "https://github.com/planetmarshall/pillow-jpls";

    license = licenses.bsd3;

    maintainers = with maintainers; [ bcdarwin ];

  };

}

pkgs/top-level/python-packages.nix

+4 −0
Original line number Diff line number Diff line
@@ -5169,6 +5169,8 @@ self: super: with self; { 














  hickle = callPackage ../development/python-modules/hickle { };



























  highdicom = callPackage ../development/python-modules/highdicom { };



























  hid = callPackage ../development/python-modules/hid {















    inherit (pkgs) hidapi;















  };










@@ -9372,6 +9374,8 @@ self: super: with self; {



























  pillow-heif = callPackage ../development/python-modules/pillow-heif { };



























  pillow-jpls = callPackage ../development/python-modules/pillow-jpls { };



























  pillow-simd = callPackage ../development/python-modules/pillow-simd {















      inherit (pkgs) freetype libjpeg zlib libtiff libwebp tcl lcms2 tk;















      inherit (pkgs.xorg) libX11;