Unverified Commit 1a5412e1 authored by Dmitry Kalinkin's avatar Dmitry Kalinkin Committed by GitHub
Browse files

toil: 5.7.1 -> 5.12.0 (#273274)

parent ea9e108a

pkgs/applications/science/misc/toil/default.nix

+6 −8
Original line number Diff line number Diff line
@@ -6,21 +6,16 @@ 


python3.pkgs.buildPythonApplication rec {

  pname = "toil";

  version = "5.7.1";

  version = "5.12.0";

  format = "setuptools";



  src = fetchFromGitHub {

    owner = "DataBiosphere";

    repo = pname;

    rev = "refs/tags/releases/${version}";

    hash = "sha256-m+XvNyzd0ly2YqKhgxezgGaCXLs3CmupJMnp5RIZqNI=";

    hash = "sha256-cTpbQo9tPZifUO59vbnIa3XUinFJ2/5Slfe4yszglFM=";

  };



  postPatch = ''

    substituteInPlace requirements.txt \

      --replace "docker>=3.7.2, <6" "docker"

  '';



  propagatedBuildInputs = with python3.pkgs; [

    addict

    dill
@@ -42,7 +37,6 @@ python3.pkgs.buildPythonApplication rec { 
    boto

    botocore

    flask

    mypy-boto3-s3

    pytestCheckHook

    stubserver

  ]);
@@ -63,6 +57,10 @@ python3.pkgs.buildPythonApplication rec { 
    "src/toil/test/src"

    "src/toil/test/wdl"

    "src/toil/test/utils/utilsTest.py"

    "src/toil/test/cwl/cwlTest.py"

    "src/toil/test/lib/test_ec2.py"

    "src/toil/test/lib/aws/test_iam.py"

    "src/toil/test/lib/aws/test_s3.py"

  ];



  disabledTests = [