//----------------------------------------------------------------------
// Includes
//----------------------------------------------------------------------
#include "MantidDataHandling/Load.h"
#include "MantidAPI/FileProperty.h"
#include "MantidKernel/ArrayProperty.h"
#include "MantidDataObjects/Workspace2D.h"
#include "MantidAPI/IDataFileChecker.h"
#include "MantidAPI/LoadAlgorithmFactory.h"
#include<algorithm>
namespace Mantid
{
namespace DataHandling
{
// Register the algorithm into the algorithm factory
DECLARE_ALGORITHM(Load)
using namespace Kernel;
using namespace API;
/// Initialisation method.
void Load::init()
{
std::vector<std::string> exts;
exts.push_back(".raw");
exts.push_back(".s*");
exts.push_back(".add");
exts.push_back(".nxs");
exts.push_back(".nx5");
exts.push_back(".xml");
exts.push_back(".n*");
exts.push_back(".dat");
exts.push_back(".txt");
exts.push_back(".csv");
exts.push_back(".spe");
declareProperty(new FileProperty("Filename", "", FileProperty::Load, exts),
"The name of the file to read, including its full or relative\n"
"path. (N.B. case sensitive if running on Linux).");
declareProperty(new WorkspaceProperty<Workspace>("OutputWorkspace", "",Direction::Output, true),
"The name of the workspace that will be created, filled with the\n"
"read-in data and stored in the Analysis Data Service.");
declareProperty("FindLoader", false, "If true the algorithm will only be run as\n"
"far as is necessary to discover the concrete Load algorithm to use");
declareProperty("LoaderName", std::string(""), "A string containing the name of the concrete loader used",
Direction::Output);
}
namespace
{
/**
* Checks this property exists in the list of algorithm properties.
*/
struct hasProperty
{
/** constructor which takes 1 arguement.
*@param name :: name of the property
*/
hasProperty(const std::string name):m_name(name){}
/**This method comapres teh property name
*@param prop :: shared pointer to property
*@return true if the property exists in the list of properties.
*/
bool operator()(Mantid::Kernel::Property* prop)
{
std::string name=prop->name();
return (!name.compare(m_name));
}
/// name of teh property
std::string m_name;
};
}
/**
* Executes the algorithm.
*/
void Load::exec()
{
std::string fileName = getPropertyValue("Filename");
std::string::size_type i = fileName.find_last_of('.');
std::string ext = fileName.substr(i+1);
std::transform(ext.begin(),ext.end(),ext.begin(),tolower);
//get the shared pointer to the specialised load algorithm to execute
API::IAlgorithm_sptr alg= getFileLoader(fileName);
if(!alg)
{
throw std::runtime_error("Cannot load file " + fileName);
}
bool findOnly = getProperty("FindLoader");
if( findOnly ) return;
g_log.information()<<"The sub load algorithm created to execute is "<<alg->name()<<" and it version is "<<alg->version()<<std::endl;
double startProgress=0,endProgress=1;
// set the load algorithm as a child algorithm
initialiseLoadSubAlgorithm(alg,startProgress,endProgress,true,-1);
//get the list of properties for this algorithm
std::vector<Kernel::Property*> props=getProperties();
///get the list properties for the sub load algorithm
std::vector<Kernel::Property*>loader_props=alg->getProperties();
//loop through the properties of this algorithm
std::vector<Kernel::Property*>::iterator itr;
for (itr=props.begin();itr!=props.end();++itr)
{
std::vector<Mantid::Kernel::Property*>::iterator prop;
//if the load sub algorithm has the same property then set it.
prop=std::find_if(loader_props.begin(),loader_props.end(),hasProperty((*itr)->name()));
if(prop!=loader_props.end())
{
alg->setPropertyValue((*prop)->name(),getPropertyValue((*prop)->name()));
}
}
//execute the load sub algorithm
alg->execute();
//se the workspace
setOutputWorkspace(alg);
}
/** get a shared pointer to the load algorithm with highest preference for loading
*@param filePath :: path of the file
*@return filePath - path of the file
*/
API::IAlgorithm_sptr Load::getFileLoader(const std::string& filePath)
{
unsigned char* header_buffer = header_buffer_union.c;
int nread;
/* Open the file and read in the first bufferSize bytes - these will
* be used to determine the type of the file
*/
FILE* fp = fopen(filePath.c_str(), "rb");
if (fp == NULL)
{
throw Kernel::Exception::FileError("Unable to open the file:", filePath);
}
nread = fread((char*)header_buffer,sizeof(char), bufferSize,fp);
header_buffer[bufferSize] = '\0';
if (nread == -1)
{
fclose(fp);
}
if (fclose(fp) != 0)
{
}
int val=0;
API::IAlgorithm_sptr load;
// now get the name of algorithms registered in the loadAlgorithmfactory
std::vector<std::string> algnames=API::LoadAlgorithmFactory::Instance().getKeys();
std::map<std::string, boost::shared_ptr<DataHandling::IDataFileChecker> >loadalgs;
/// create load algorithms and store it in a map
std::vector<std::string>::const_iterator citr;
for (citr=algnames.begin();citr!=algnames.end();++citr)
{
loadalgs[*citr]= API::LoadAlgorithmFactory::Instance().create(*citr);
}
std::map<std::string, boost::shared_ptr<DataHandling::IDataFileChecker> >::const_iterator alg_itr;
//loop thorugh the map and do a quick check for each load algorithm by opening the file and look at it's first 100 bytes and extensions
//if quick check succeeds then do a filecheck again by opening the file and read the structure of the file
for (alg_itr=loadalgs.begin();alg_itr!=loadalgs.end();++alg_itr)
{
bool bcheck=alg_itr->second->quickFileCheck(filePath,nread,header_buffer);
if(!bcheck)
{
continue;
}
int ret=alg_itr->second->fileCheck(filePath);
if(ret>val)
{
// algorithm with highest preference will cached.
val=ret;
load=alg_itr->second;
}
}
if( load )
{
setPropertyValue("LoaderName", load->name());
}
return load;
}
/** This method set the algorithm as a child algorithm.
* @param alg :: The shared pointer to a algorithm
* @param startProgress :: The percentage progress value of the overall algorithm where this child algorithm starts
* @param endProgress :: The percentage progress value of the overall algorithm where this child algorithm ends
* @param enableLogging :: Set to false to disable logging from the child algorithm
* @param version :: The version of the child algorithm to create. By default gives the latest version.
*/
void Load::initialiseLoadSubAlgorithm(API::IAlgorithm_sptr alg, const double startProgress, const double endProgress,
const bool enableLogging, const int& version)
{
(void) version; // Avoid compiler warning.
//set as a child
alg->initialize();
alg->setChild(true);
alg->setLogging(enableLogging);
// If output workspaces are nameless, give them a temporary name to satisfy validator
const std::vector< Property*> &props = alg->getProperties();
for (unsigned int i = 0; i < props.size(); ++i)
{
if (props[i]->direction() == 1 && dynamic_cast<IWorkspaceProperty*>(props[i]) )
{
if ( props[i]->value().empty() ) props[i]->setValue("ChildAlgOutput");
}
}
if (startProgress >= 0 && endProgress > startProgress && endProgress <= 1.)
{
alg->addObserver(m_progressObserver);
alg->setChildStartProgress(startProgress);
alg->setChildEndProgress(endProgress);
}
}
/**
* Set the output workspace(s) if the load's return workspace
* has type API::Workspace
*@param load :: shared pointer to load algorithm
*/
void Load::setOutputWorkspace(API::IAlgorithm_sptr& load)
{
try
{
Workspace_sptr ws = load->getProperty("OutputWorkspace");
WorkspaceGroup_sptr wsg = boost::dynamic_pointer_cast<WorkspaceGroup>(ws);
if (wsg)
{
setProperty("OutputWorkspace",ws);
std::vector<std::string> names = wsg->getNames();
for(size_t i = 0; i < names.size(); ++i)
{
std::ostringstream propName;
propName << "OutputWorkspace_" << (i+1);
DataObjects::Workspace2D_sptr memberwsws1 = load->getProperty(propName.str());
std::string memberwsName = load->getPropertyValue(propName.str());
declareProperty(new WorkspaceProperty<>(propName.str(),memberwsName,Direction::Output));
setProperty(propName.str(),boost::dynamic_pointer_cast<MatrixWorkspace>(memberwsws1));
}
}
else
{
setProperty("OutputWorkspace",ws);
}
}
catch(std::runtime_error&)
{
MatrixWorkspace_sptr mws=load->getProperty("OutputWorkspace");
setProperty("OutputWorkspace",boost::dynamic_pointer_cast<Workspace>(mws));
}
}
} // namespace DataHandling
} // namespace Mantid