The unit tests SetCrystalLocationTest, LoadEventNexusTest were failing due to
some detectors in the input nexus file not having a corresponding workspace
index. This showed up as the pixelID_to_wi_vector vector having
std::numeric_limits<size_t>::max() as the wi value
I've added check that wi<numEventLists before trying to retrieve the spectrum
for wi which is the same check that's done elsewhere in ProcessBankData.cpp

If the file BSS_11841_event.nxs had been loaded with compression on
this would have caused a crash even before my fix to the sort order

The LoadEventNexus algorithm is run without compression and the events
in the Nexus file are not already sorted by pulse time, the algorithm
is incorrectly labelling them as sorted by pulse time. This change fixes
the problem by always looping through the "used" detectors even if
loading without compression
This problem was causing FilterByTime to incorrectly slice up an event
file by time. A lot of events were assigned to the last second of a run
when slicing by time

Giovanni Di Siena authored Mar 31, 2020 and Gigg, Martyn Anthony committed Apr 07, 2020

In places other substitutions have been made, e.g
Clang does not yet specialize std::shared_ptr for T[]. Vector
has been used instead. The operator[] methods were incorrectly
marked const but returning a non-const reference - this has been fixed.
Refs #25842

Runs clang-tidy pass by ref across the codebase to fix-up various
warnings we are seeing in cppcheck

Also updated class_maker.py

Rather than doing foreach event: getpulse
foreach pulse: foreach eventinpulse

Mostly done by rolling back the changes that were made

Historic files can have this case. We change the local copy of logs to contain 1s to modernize them

Remove a check performed on individual events to account for this special case

Update copyright headers in all files

Squashed commit of the following:

* First version of a script to manage copyright statements

re #23468

* Neatened up script, added comments

re #23488

* move script to tools directory

re #23488

* small script changes and a couple of manual file changes

re #23488

* Minor chnage to whitespace detection in regex

re #23488

* Add an excluded directory

re #23488

* remove a repeasted copyright statement in a file

re #23488

* Don't comsume the comment end if it is on the same line

re #23488

* fix error in new copright parsing

re #23488

* remove double copyrifght entry

re #23488

* Improve handling of old copyrights at the start of comments

re #23488

* remove empty comments re #23488

* exclude gsoapgenerated directories

re #23488

* Sort out greedy line matching re #23488

* improve empty comment removal

re #23488

* improve false positives

re #23488

* impressive speedup by limiting regex matching length

re #23488

* remove evil invisible non ascii character

Also upadte the copyright at the same time

re #23488

* resolve multiple copyrights in a single file

re #23488

* resolve an issue with new statement detection

re #23488

* another unprintable unicode character

re #23488

* pep updates and cmake the new copyright fit clang format

re #23488

* update already done new format headers

re #23488

* wrong type of bracket

re #23488

* Update class_maker and friends

re #23488

* Update all copyright statements

re #23488

* clang format re #23488

* flake8 warnings re #23488

* Flake8 warnings re #23488

* Exclude .cmake.in and rb.in files

re #23488

* replace missing line re #23488

* exclude .py.in files as they are flasely recognized as C++

re #23488

* another setp.py.in re #23488

* another .py.in correction re #23488

* Hopefully the last of the .py.in files re #23488

* resolve utf-8 encoding of python files and changed ABINS checksum

re #23488

* updates to unit tests that reference line numbers

re #23488

* remaining unit test files and other fixes

re #23488

Update to clang-format-5 and reformat the codebase 

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We could just ignore invalid pixels, but given that the range of pixels being
used should now be correct this would indicates a coding error, so I've made
it throw instead.