Update copyright headers in all files

Squashed commit of the following:

* First version of a script to manage copyright statements

re #23468

* Neatened up script, added comments

re #23488

* move script to tools directory

re #23488

* small script changes and a couple of manual file changes

re #23488

* Minor chnage to whitespace detection in regex

re #23488

* Add an excluded directory

re #23488

* remove a repeasted copyright statement in a file

re #23488

* Don't comsume the comment end if it is on the same line

re #23488

* fix error in new copright parsing

re #23488

* remove double copyrifght entry

re #23488

* Improve handling of old copyrights at the start of comments

re #23488

* remove empty comments re #23488

* exclude gsoapgenerated directories

re #23488

* Sort out greedy line matching re #23488

* improve empty comment removal

re #23488

* improve false positives

re #23488

* impressive speedup by limiting regex matching length

re #23488

* remove evil invisible non ascii character

Also upadte the copyright at the same time

re #23488

* resolve multiple copyrights in a single file

re #23488

* resolve an issue with new statement detection

re #23488

* another unprintable unicode character

re #23488

* pep updates and cmake the new copyright fit clang format

re #23488

* update already done new format headers

re #23488

* wrong type of bracket

re #23488

* Update class_maker and friends

re #23488

* Update all copyright statements

re #23488

* clang format re #23488

* flake8 warnings re #23488

* Flake8 warnings re #23488

* Exclude .cmake.in and rb.in files

re #23488

* replace missing line re #23488

* exclude .py.in files as they are flasely recognized as C++

re #23488

* another setp.py.in re #23488

* another .py.in correction re #23488

* Hopefully the last of the .py.in files re #23488

* resolve utf-8 encoding of python files and changed ABINS checksum

re #23488

* updates to unit tests that reference line numbers

re #23488

* remaining unit test files and other fixes

re #23488

* Refs #23346 convention now known after sort; added to system test

* Refs #23346 add to release notes

* Refs #23346 reword release note

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Merge done to enable documentation be be fixed, because of removal of
alias directive and addition of related algorithms directive.

Signed-off-by: Karl Palmen <karl.palmen@stfc.ac.uk>

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Elliot Oram authored Mar 14, 2018 and Gigg, Martyn Anthony committed Mar 15, 2018

PredictFractionalPeaks was using a new raytracer for every peak it created and therefore throwing away the caching information about the bounding boxs of detectors / panels causing a huge slow down. Resolved by exposing the findDetector(raytracer) overload to IPeaks and using single raytracer for all calls.
Work also include small refactor for const autos

Refs #22060

The detPos was not being cleared properly when setting QLab.

This will approximate the position of a peak in detector space using an
extended detector space component. If the component exists peaks are
assumed to lie on the surface of the component. This will only be used
if the peak does not interect with a real detector.