diff --git a/Framework/API/src/Axis.cpp b/Framework/API/src/Axis.cpp
index e8db95989d581e2ea3ebc8e6f147ab24c69d8c5d..6f8abc8a5af84d90791a8898728fc123952ebe21 100644
--- a/Framework/API/src/Axis.cpp
+++ b/Framework/API/src/Axis.cpp
@@ -5,7 +5,6 @@
 #include "MantidKernel/Exception.h"
 #include "MantidKernel/UnitFactory.h"
 
-
 namespace Mantid {
 namespace API {
 
diff --git a/Framework/API/src/IFunctionMW.cpp b/Framework/API/src/IFunctionMW.cpp
index 0d8f987a1e4a82e4952dbf7612db3da88ba1462e..9797475d1d8a0b7a1e60d753a47c4bf2d02dc708 100644
--- a/Framework/API/src/IFunctionMW.cpp
+++ b/Framework/API/src/IFunctionMW.cpp
@@ -4,7 +4,6 @@
 #include "MantidAPI/IFunctionMW.h"
 #include "MantidAPI/MatrixWorkspace.h"
 
-
 namespace Mantid {
 namespace API {
 using namespace Geometry;
diff --git a/Framework/Algorithms/src/Regroup.cpp b/Framework/Algorithms/src/Regroup.cpp
index 9a218cf3604903b67cab49cf7c025e80d1c61030..b3997f78f68c2899f31e85d3f23a45da697091dc 100644
--- a/Framework/Algorithms/src/Regroup.cpp
+++ b/Framework/Algorithms/src/Regroup.cpp
@@ -12,7 +12,6 @@
 #include <functional>
 #include <cmath>
 
-
 namespace Mantid {
 namespace Algorithms {
 
diff --git a/Framework/Algorithms/test/RegroupTest.h b/Framework/Algorithms/test/RegroupTest.h
index 2ac82cc418841b7162b52a919203ded4193b1d4a..fd329c37d4f9aa5b7bda8685ced9616a9f72bbfd 100644
--- a/Framework/Algorithms/test/RegroupTest.h
+++ b/Framework/Algorithms/test/RegroupTest.h
@@ -8,7 +8,6 @@
 #include "MantidAlgorithms/Regroup.h"
 #include "MantidAPI/WorkspaceProperty.h"
 
-
 using namespace Mantid::Kernel;
 using namespace Mantid::DataObjects;
 using namespace Mantid::API;
diff --git a/Framework/CurveFitting/src/CostFuncLeastSquares.cpp b/Framework/CurveFitting/src/CostFuncLeastSquares.cpp
index 8a2c0d990079cc55112cebb6553f0e9ef21eeebe..f0ada5744ed566b685c54fcba4fd7d3decfcb637 100644
--- a/Framework/CurveFitting/src/CostFuncLeastSquares.cpp
+++ b/Framework/CurveFitting/src/CostFuncLeastSquares.cpp
@@ -10,7 +10,6 @@
 #include "MantidKernel/Logger.h"
 #include "MantidKernel/MultiThreaded.h"
 
-
 namespace Mantid {
 namespace CurveFitting {
 namespace {
diff --git a/Framework/DataHandling/src/SaveRKH.cpp b/Framework/DataHandling/src/SaveRKH.cpp
index 915a33bf21f740927492bd2d111af20fe079752c..0caf9bc73b08d734b1e07e9cdeb799c9b1501e43 100644
--- a/Framework/DataHandling/src/SaveRKH.cpp
+++ b/Framework/DataHandling/src/SaveRKH.cpp
@@ -7,7 +7,6 @@
 #include <Poco/LocalDateTime.h>
 #include <Poco/DateTimeFormatter.h>
 
-
 namespace Mantid {
 namespace DataHandling {
 
diff --git a/Framework/DataHandling/test/RawFileInfoTest.h b/Framework/DataHandling/test/RawFileInfoTest.h
index b79e4a66897d0c46ec87903e74b82bb692d0543a..ad68b2485b0afdf7c8f313e03a2b738e300f6929 100644
--- a/Framework/DataHandling/test/RawFileInfoTest.h
+++ b/Framework/DataHandling/test/RawFileInfoTest.h
@@ -5,7 +5,6 @@
 #include "MantidDataHandling/RawFileInfo.h"
 #include "MantidAPI/ITableWorkspace.h"
 
-
 using namespace Mantid::DataHandling;
 
 class RawFileInfoTest : public CxxTest::TestSuite {
diff --git a/Framework/DataHandling/test/XMLInstrumentParameterTest.h b/Framework/DataHandling/test/XMLInstrumentParameterTest.h
index f9f2225fc1f77e994a649206265f459f8ace42da..4e022520d27dc7d60a663338d0723b6255371a84 100644
--- a/Framework/DataHandling/test/XMLInstrumentParameterTest.h
+++ b/Framework/DataHandling/test/XMLInstrumentParameterTest.h
@@ -11,7 +11,6 @@
 #include "MantidKernel/ConfigService.h"
 #include "MantidKernel/TimeSeriesProperty.h"
 
-
 using namespace Mantid::API;
 using namespace Mantid::Kernel;
 using namespace Mantid::DataHandling;
diff --git a/Framework/Geometry/src/Math/PolygonIntersection.cpp b/Framework/Geometry/src/Math/PolygonIntersection.cpp
index 26d2558d8e4333f7f5d63e70e7acc7fd7333ece1..29d1b209a9db0d6ad6b97927a9d4deb757cd4ada 100644
--- a/Framework/Geometry/src/Math/PolygonIntersection.cpp
+++ b/Framework/Geometry/src/Math/PolygonIntersection.cpp
@@ -7,7 +7,6 @@
 #include "MantidKernel/Logger.h"
 #include "MantidKernel/V2D.h"
 
-
 using namespace Mantid::Kernel;
 
 namespace Mantid {
diff --git a/Framework/Kernel/inc/MantidKernel/ANN/ANN.h b/Framework/Kernel/inc/MantidKernel/ANN/ANN.h
index 883617cb529bc4c8395bedc3891cae33c8f6b026..30d66ac44a7fda27459bfd92bfa513a01d9fc04a 100644
--- a/Framework/Kernel/inc/MantidKernel/ANN/ANN.h
+++ b/Framework/Kernel/inc/MantidKernel/ANN/ANN.h
@@ -107,10 +107,10 @@
 //  basic includes
 //----------------------------------------------------------------------
 
-#include <cstdlib>  // standard lib includes
-#include <cmath>    // math includes
-#include <iosfwd> // I/O streams
-#include <cstring>  // C-style strings
+#include <cstdlib> // standard lib includes
+#include <cmath>   // math includes
+#include <iosfwd>  // I/O streams
+#include <cstring> // C-style strings
 
 //----------------------------------------------------------------------
 // Limits
diff --git a/Framework/Kernel/test/BoseEinsteinDistributionTest.h b/Framework/Kernel/test/BoseEinsteinDistributionTest.h
index 99ead0791a90884562996e99fe56f92fd76455ff..38809270e4610ce1cae724b1dc473f50c20d184b 100644
--- a/Framework/Kernel/test/BoseEinsteinDistributionTest.h
+++ b/Framework/Kernel/test/BoseEinsteinDistributionTest.h
@@ -6,7 +6,6 @@
 
 #include <cxxtest/TestSuite.h>
 
-
 class BoseEinsteinDistributionTest : public CxxTest::TestSuite {
 public:
   void test_Standard_Distribution_Gives_Correct_Value_Away_From_Edge() {
diff --git a/Framework/Kernel/test/FunctionTaskTest.h b/Framework/Kernel/test/FunctionTaskTest.h
index 48c4c3dcd27c2312d59f5af81c2ecc9618e45bcb..ff7054fa190719905c45b676defe03a3973630c8 100644
--- a/Framework/Kernel/test/FunctionTaskTest.h
+++ b/Framework/Kernel/test/FunctionTaskTest.h
@@ -7,7 +7,6 @@
 #include "MantidKernel/Task.h"
 #include "MantidKernel/FunctionTask.h"
 
-
 using namespace Mantid::Kernel;
 
 /** Functions for use by the tasks */
diff --git a/Framework/Kernel/test/MagneticFormFactorTableTest.h b/Framework/Kernel/test/MagneticFormFactorTableTest.h
index fe0cc907d33c462d89667fff044a19e152c96470..1d660d419e635a62a49b871ce6bb465f5fd44ce9 100644
--- a/Framework/Kernel/test/MagneticFormFactorTableTest.h
+++ b/Framework/Kernel/test/MagneticFormFactorTableTest.h
@@ -6,7 +6,6 @@
 
 #include <boost/scoped_ptr.hpp>
 
-
 using Mantid::PhysicalConstants::MagneticFormFactorTable;
 
 class MagneticFormFactorTableTest : public CxxTest::TestSuite {
diff --git a/Framework/Kernel/test/TaskTest.h b/Framework/Kernel/test/TaskTest.h
index 8c21073991a9ec5074aeefe228f89a830a1e1c8c..975a27f179e93dcfe4576d66fcbccbe2f8d1f80f 100644
--- a/Framework/Kernel/test/TaskTest.h
+++ b/Framework/Kernel/test/TaskTest.h
@@ -6,7 +6,6 @@
 #include <MantidKernel/Timer.h>
 #include "MantidKernel/Task.h"
 
-
 using namespace Mantid::Kernel;
 
 namespace TaskTestNamespace {
diff --git a/Framework/Kernel/test/UnitConversionTest.h b/Framework/Kernel/test/UnitConversionTest.h
index 495bbcb52f40476370b531504a9bd890a5b64698..369caac852ad64d24fd85e11192719c38fc3b8c3 100644
--- a/Framework/Kernel/test/UnitConversionTest.h
+++ b/Framework/Kernel/test/UnitConversionTest.h
@@ -6,7 +6,6 @@
 #include "MantidKernel/Exception.h"
 #include "MantidKernel/PhysicalConstants.h"
 
-
 using Mantid::Kernel::UnitConversion;
 
 class UnitConversionTest : public CxxTest::TestSuite {
diff --git a/Framework/MDAlgorithms/test/SlicingAlgorithmTest.h b/Framework/MDAlgorithms/test/SlicingAlgorithmTest.h
index 9f33ccbad80018fdb61916fa79cabad01f8bf82d..762ffd5f2d12c660586fb3b8f01095fac3a46d4d 100644
--- a/Framework/MDAlgorithms/test/SlicingAlgorithmTest.h
+++ b/Framework/MDAlgorithms/test/SlicingAlgorithmTest.h
@@ -9,7 +9,6 @@
 
 #include <cxxtest/TestSuite.h>
 
-
 using namespace Mantid::API;
 using namespace Mantid::DataObjects;
 using namespace Mantid::Geometry;