diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
index 0afc1987b682677084f8f62b950eebe65885c0ec..d401fa8e4bb48a932978f29a4e73caa6f2de3fd0 100644
--- a/scripts/CMakeLists.txt
+++ b/scripts/CMakeLists.txt
@@ -5,7 +5,6 @@ add_subdirectory(HFIRPowderReduction)
 add_subdirectory(Interface/ui)
 add_subdirectory(TofConverter)
 add_subdirectory(HFIR_4Circle_Reduction)
-add_subdirectory(Muon)
 add_subdirectory(ErrorReporter)
 
 # Chain all required interface custom targets into CompilePyUI
@@ -15,7 +14,6 @@ add_custom_target(CompilePyUI DEPENDS
   CompileUITofConverter
   CompileUIUI
   CompileUIHFIR_4Circle_Reduction
-  CompileUIFrequency_Domain_Analysis
   CompileUIErrorReporter
 )
 
@@ -26,7 +24,6 @@ set_property ( TARGET CompileUIHFIRPowderReduction PROPERTY FOLDER "CompilePyUI"
 set_property ( TARGET CompileUITofConverter PROPERTY FOLDER "CompilePyUI" )
 set_property ( TARGET CompileUIUI PROPERTY FOLDER "CompilePyUI" )
 set_property ( TARGET CompileUIHFIR_4Circle_Reduction PROPERTY FOLDER "CompilePyUI" )
-set_property ( TARGET CompileUIFrequency_Domain_Analysis PROPERTY FOLDER "CompilePyUI" )
 set_property ( TARGET CompileUIErrorReporter PROPERTY FOLDER "CompilePyUI" )
 
 # External GUIs
diff --git a/scripts/Muon/CMakeLists.txt b/scripts/Muon/CMakeLists.txt
deleted file mode 100644
index 456c62caea68bb9621802e902155ce75cac7d10b..0000000000000000000000000000000000000000
--- a/scripts/Muon/CMakeLists.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-include(UiToPy)
-
-# List of UIs to Auto convert
-set(UI_FILES
-    )
-
-UiToPy(UI_FILES CompileUIFrequency_Domain_Analysis)