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Commit 9d79ab6d authored by Dominik Arominski's avatar Dominik Arominski
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Merge remote-tracking branch 'origin/master' into ILL_loaders_cleanup

parents 49dd30fa 107e7fea
Show whitespace changes
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.clang-format
View file @ 9d79ab6d
BasedOnStyle: LLVM
---
BasedOnStyle: LLVM
---
Language: Cpp
ColumnLimit: 120
...
.cmake-format.json
View file @ 9d79ab6d
......@@ -92,14 +92,26 @@
"MODULE_OUTPUT_DIR": 1,
"PYQT_VERSION": 1,
"FOLDER": 1,
"SIP_SRCS": "+",
"SIP_SRC": 1,
"HEADER_DEPS": "+",
"INCLUDE_DIRS": "+",
"LINK_LIBS": "+",
"INSTALL_DIRS": "+",
"INSTALL_DIR": "+",
"OSX_INSTALL_RPATH": "+",
"LINUX_INSTALL_RPATH": "+"
}
},
"add_python_package": {
"kwargs": {
"EGGLINKNAME": 1,
"INSTALL_LIB_DIRS": "+",
"INSTALL_BIN_DIR": 1,
"EXCLUDE_ON_INSTALL": "+"
},
"flags": [
"EXECUTABLE",
"GENERATE_SITECUSTOMIZE"
]
}
},
"always_wrap": [],
......
.flake8
View file @ 9d79ab6d
......@@ -13,9 +13,7 @@ exclude =
images,
installers,
instrument,
MantidPlot,
qt/applications/workbench/workbench/app/resources.py,
qt/paraview_ext,
qt/python/mantidqt/resources.py,
qt/python/mantidqt/dialogs/errorreports/resources_qt4.py
qt/python/mantidqt/dialogs/errorreports/resources_qt5.py
......
.githooks/pre-commit deleted 100755 → 0
View file @ 49dd30fa
#!/usr/bin/env bash
#=============================================================================
# Copyright 2010-2011 Kitware, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#=============================================================================
die() {
echo 'pre-commit hook failure' 1>&2
echo '-----------------------' 1>&2
echo '' 1>&2
echo "$@" 1>&2
exit 1
}
zero='0000000000000000000000000000000000000000'
#-----------------------------------------------------------------------------
# Check for committer identity.
advice='
Use the commands
git config --global user.name '\''Your Name'\''
git config --global user.email '\''you@yourdomain.com'\''
to introduce yourself to Git before committing.'
# Ensure name and email are available.
git config --get user.name > /dev/null &&
git config --get user.email > /dev/null ||
die 'Identity not configured!' "$advice"
# Validate the name and email.
git config --get user.name | grep ' ' > /dev/null ||
die 'Set user.name to your Real Name (with a space), not a userid.' "$advice"
git config --get user.email | grep '^[^@]*@[^@]*$' > /dev/null ||
die 'Set user.email to an email address (userid@validdomain.com).' "$advice"
#-----------------------------------------------------------------------------
# Check content that will be added by this commit.
if git rev-parse --verify -q HEAD > /dev/null; then
against=HEAD
else
# Initial commit: diff against an empty tree object
against=4b825dc642cb6eb9a060e54bf8d69288fbee4904
fi
# Merge ("git commit" after "git merge" with conflicts or --no-commit)
merge_head=$(git rev-parse -q --verify MERGE_HEAD) || merge_head=''
# Disallow non-ascii file names. The printable range starts at the
# space character and ends with tilde.
if test "$(git diff --cached --name-only --diff-filter=A -z $against |
LC_ALL=C tr -d '[ -~]\0')"; then
die 'Non-ascii file names may not be added:
'"$(git diff --cached --name-only --diff-filter=A $against)"
fi
#-----------------------------------------------------------------------------
# Builtin whitespace checks.
bad=$(git diff-index --check --cached $against -- --ignore-space-at-eol) || die "$bad"
# Approximate whitespace=tab-in-indent check with Git < 1.7.2.
git --version | grep -q " \(1\.[0-6]\|1\.7\.[01]\)" &&
approx_tab_in_indent=true || approx_tab_in_indent=false
check_tab() {
lines=$(git diff-index -p --cached $against -- "$1" |
grep '^+ ') &&
echo "$lines" |
while read line; do
echo "$1: tab in indent." &&
echo "$line"
done
}
# Reject addition of a line without a newline at end-of-file.
check_no_lf_at_eof() {
lines=$(git diff-index -p --cached $against -- "$1" | tail -2)
if echo "$lines" | head -1 | grep -q '^+' &&
echo "$lines" | tail -1 | grep -q '^\\ No newline'; then
echo "$1: No newline at end of file"
fi
}
# Custom whitespace checks.
check_whitespace() {
ws=$(git check-attr whitespace -- "$file" |
sed 's/^[^:]*: whitespace: //')
if $approx_tab_in_indent; then
case ",$ws," in
*,tab-in-indent,*) check_tab "$1" ;;
esac
fi
case ",$ws," in
*,no-lf-at-eof,*) check_no_lf_at_eof "$1" ;;
esac
}
bad=$(git diff-index --name-only --cached $against -- |
while read file; do
check_whitespace "$file"
done)
test -z "$bad" || die "$bad"
#-----------------------------------------------------------------------------
# Check file modes and sizes.
mode_looks_exe() {
case "$1" in
*.bat) return 0 ;;
*.cmd) return 0 ;;
*.exe) return 0 ;;
*.com) return 0 ;;
esac
git cat-file blob "$2" | head -1 | grep "^#\!/" > /dev/null
}
mode_not_exe () {
echo "The file '$file' has looks executable but does not have an executable mode."
}
mode_bad_exe () {
echo "The file '$file' has executable mode but does not look executable."
}
mode_non_file () {
echo "The path '$file' has a non-file mode."
}
check_mode() {
case "$dst_mode" in
100755) mode_looks_exe "$file" "$dst_obj" || mode_bad_exe ;;
100644) mode_looks_exe "$file" "$dst_obj" && mode_not_exe ;;
160000) ;;
*) mode_non_file ;;
esac
}
size_max_KiB=$(git config hooks.MaxObjectKiB)
test -n "$size_max_KiB" || size_max_KiB=1024
size_too_large_once=""
size_too_large_once() {
test -z "$size_too_large_once" || return ; size_too_large_once=done
echo 'At least one file is staged for commit with size larger than the limit.
We prefer to keep large files out of the main source tree, especially
binary files that do not compress well. This hook disallows large files.
If it is vital that this file enters the repository, speak to a dev lead.
Remember that unit tests should typically not require loading files (see
http://www.mantidproject.org/Unit_Test_Good_Practice#Using_files_in_Unit_tests).
'
# Instructions for allowing ESSENTIAL files only:
# A limit for specific files or patterns may be set in ".gitattributes" with
# the "hooks.MaxObjectKiBYYMMDD" attribute (where YYMMDD is the current date).
# For example, the line
#
# *.c hooks.MaxObjectKiB121207=2048
#
# sets a limit of 2048 KiB for C source files, but WILL ONLY WORK on the date
# matching the entry. This avoids the previous behaviour that once set the
# hook was forever disabled if the entry was not removed afterwards.
# See "git help attributes" for details on the .gitattributes format.
}
size_too_large() {
size_too_large_once
echo "The path '$file' has size $file_KiB KiB, greater than allowed $max_KiB KiB."
}
size_validate_max_KiB() {
test "$max_KiB" -ge "0" 2>/dev/null && return 0
echo "The path '$file' has invalid attribute \"hooks-MaxObjectKiB=$max_KiB\"."
return 1
}
check_size() {
test "$dst_obj" != "$zero" || return
datesuffix=`date +%y%m%d`
hookname='hooks.MaxObjectKiB'$datesuffix
max_KiB=$(git check-attr $hookname -- "$file" |
sed "s/^[^:]*: ${hookname}: //")
case "$max_KiB" in
'unset') return ;; # No maximum for this object.
'set') max_KiB="$size_max_KiB" ;; # Use local default.
'unspecified') max_KiB="$size_max_KiB" ;; # Use local default.
*) size_validate_max_KiB || return ;;
esac
if test "$max_KiB" -gt "0"; then
file_KiB=$(expr '(' $(git cat-file -s "$dst_obj") + 1023 ')' / 1024)
test "$file_KiB" -le "$max_KiB" || size_too_large
fi
}
short_commit() {
git rev-parse --short "$1" 2>/dev/null || echo "$1"
}
lookup_config_module_update() {
update=$(git config "hooks.$1.update")
# Special-case "true" to accept any update.
test "{$update}" = "{true}" && echo '.' && return
# Format is "aaaaaa..bbbbbb" for update aaaaaa => bbbbbb.
# Convert to regex "^aaaaaa[a-z0-9]* bbbbbb[a-z0-9]*$".
sha1ex='[a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9][a-z0-9]*'
regex='^\('"$sha1ex"'\)\.\.\('"$sha1ex"'\)$'
echo "$update" |
sed -n "/$regex/ {s/$regex/"'^\1[a-z0-9]* \2[a-z0-9]*$/;p;}' |
grep '.' # Return false if result is empty.
}
check_module() {
enabled=$(git config --get --bool hooks.submodule) || enabled=true
test "$enabled" = "false" && return
# Allow merged submodule updates.
test -n "$merge_head" &&
merge_obj=$(git rev-parse -q --verify "$merge_head:$file") &&
test "$merge_obj" = "$dst_obj" && return
# Allow module-only commits without extra work.
test -z "$diffs_normal" && return
# Check if module update is allowed with other changes.
allow=$(lookup_config_module_update "$file") || allow='none'
if echo "$src_obj $dst_obj" | grep "$allow" > /dev/null; then
return
fi
src_short=$(short_commit "$src_obj")
dst_short=$(short_commit "$dst_obj")
echo 'A submodule link is staged for commit (among other changes):
"'"$file"'" '"$src_short => $dst_short"'
This may occur by accident so we require an extra step to commit.
If you intend to include this change in your commit, run
git config "hooks.'"$file"'.update" '"$src_short..$dst_short"'
to explicitly allow the change and try the commit again. Otherwise run
git reset HEAD -- "'"$file"'"
to unstage the change. Furthermore, if you did not intend to modify
the submodule at all, also run
git submodule update -- "'"$file"'"
to checkout the current version of the submodule in your work tree.
Test your changes again to see if they still work with the module.
Finally, try the commit again.
'
return 1
}
check_module_rewind() {
parent_name="$1"
parent_commit="$2"
base=$(GIT_DIR="$file/.git" \
git merge-base $src_obj $dst_obj 2>/dev/null) || base=''
test "$base" != "$dst_obj" && return
parent_short=$(short_commit "$parent_commit")
src_short=$(GIT_DIR="$file/.git" short_commit "$src_obj")
dst_short=$(GIT_DIR="$file/.git" short_commit "$dst_obj")
echo 'This commit would rewind a submodule link:
"'"$file"'" '"$src_short => $dst_short"'
from the newer version in '"$parent_name"' ('"$parent_short"'). Run
git reset '"$parent_name"' -- "'"$file"'"
git submodule update -- "'"$file"'"
to checkout the newer version of the submodule in your work tree.
Then try the commit again.
'
return 1
}
diffs=$(git diff-index --cached $against -- |
sed -n '/^:[^:]/ {s/^://;p;}')
diffs_normal=$(echo "$diffs" | grep -v '^...... 160000')
diffs_module=$(echo "$diffs" | grep '^...... 160000')
bad=$(
test -n "$diffs_normal" && echo "$diffs_normal" |
while read src_mode dst_mode src_obj dst_obj status file; do
if test "$src_mode" != "$dst_mode" -a "$dst_mode" != "000000"; then
check_mode
fi
if test "$dst_mode" != "160000" -a "$dst_mode" != '000000'; then
check_size
fi
done
test -n "$diffs_module" && echo "$diffs_module" |
while read src_mode dst_mode src_obj dst_obj status file; do
check_module_rewind HEAD "$against" &&
check_module ||
break
done
)
test -z "$bad" || die "$bad"
#-----------------------------------------------------------------------------
# Merge checks.
if test -n "$merge_head"; then
merge_diffs=$(git diff-index --cached $merge_head -- |
sed -n '/^:[^:]/ {s/^://;p;}')
else
merge_diffs=''
fi
merge_diffs_normal=$(echo "$merge_diffs" | grep -v '^...... 160000')
merge_diffs_module=$(echo "$merge_diffs" | grep '^...... 160000')
bad=$(
test -n "$merge_diffs_module" && echo "$merge_diffs_module" |
while read src_mode dst_mode src_obj dst_obj status file; do
check_module_rewind MERGE_HEAD "$merge_head" ||
break
done
)
test -z "$bad" || die "$bad"
#-----------------------------------------------------------------------------
# Style hooks.
#. "$GIT_DIR/hooks/pre-commit-style"
#-----------------------------------------------------------------------------
# Chain to project-specific hook.
#. "$GIT_DIR/hooks/hooks-chain.bash"
#hooks_chain pre-commit "$@"
# vim: set filetype=sh tabstop=8 softtabstop=8 shiftwidth=8 noexpandtab :
.github/ISSUE_TEMPLATE.md deleted 100644 → 0
View file @ 49dd30fa
<!-- If the issue was raised by a user they should be named here.
**Original reporter:** [username facility]/[nobody]
-->
### Expected behavior
### Actual behavior
### Steps to reproduce the behavior
### Platforms affected
.github/ISSUE_TEMPLATE/bug_report.md 0 → 100644
View file @ 9d79ab6d
---
name: Bug report
about: Create a report to help us improve
title: ''
labels: 'Bug'
assignees: ''
---
<!-- Issues which impact security should have a Vulnerability label added to them -->
<!-- If this issue is raised on behalf of a user they should be named here.
**Original reporter:** [username facility]/[nobody]
-->
**Describe the bug**
<!-- A clear and concise description of what the bug is. -->
**To Reproduce**
<!--Steps to reproduce the behavior:
For example
1. Go to '...'
2. Click on '....'
3. Scroll down to '....'
4. See error
-->
**Expected behavior**
<!-- A clear and concise description of what you expected to happen. -->
**Screenshots**
<!--If applicable/possible, add screenshots to help explain your problem. -->
**Platform/Version (please complete the following information):**
- OS: [e.g. Windows, RHEL 7, Ubuntu, macOS]
- OS Version:
- Mantid Version [e.g. 6.0.0]
**Additional context**
<!--Add any other context about the problem here.-->
.github/ISSUE_TEMPLATE/config.yml 0 → 100644
View file @ 9d79ab6d
blank_issues_enabled: true
contact_links:
- name: MantidProject Forum
url: https://forum.mantidproject.org
about: Please ask and answer questions here.
.github/ISSUE_TEMPLATE/investigation.md 0 → 100644
View file @ 9d79ab6d
---
name: Investigation
about: Create a task to investigate options for future work
title: 'Investigate ...'
labels: 'Investigation'
assignees: ''
---
**Describe the outcome that is desired.**
<!--A clear and concise description of the intended outcome of the future work. Ex. Dependency A will be removed.-->
**Does the outcome relate directly to a problem? Please describe.**
<!--A clear and concise description of what the problem is. Ex. Dependency A is no longer maintained/has grown too large-->
**Describe any solutions you are considering**
<!--A clear and concise description of any solutions you've already considered.-->
**Additional context**
<!--Add any other context or screenshots about the task here.-->
.github/ISSUE_TEMPLATE/maintenance.md 0 → 100644
View file @ 9d79ab6d
---
name: Maintenance
about: Create a task for maintenance of the codebase
title: 'Investigate ...'
labels: 'Maintenance'
assignees: ''
---
**Describe the outcome that is desired.**
<!--A clear and concise description of the intended outcome. Ex. The number of cppecheck warnings will be reduced to 0-->
**Describe any solutions you are considering**
<!--A clear and concise description of any solutions you've already considered.-->
**Additional context**
<!--Add any other context or screenshots about the task here.-->
.github/ISSUE_TEMPLATE/new_feature.md 0 → 100644
View file @ 9d79ab6d
---
name: New Feature
about: Suggest an idea for this project
title: ''
labels: ''
assignees: ''
---
**Is your feature request related to a problem? Please describe.**
<!--A clear and concise description of what the problem is. Ex. I'm always frustrated when [...]-->
**Describe the solution you'd like**
<!--A clear and concise description of what you want to happen. Consider using the language of user stories. Ex. As user/developer I need to [...]-->
**Describe alternatives you've considered**
<!--A clear and concise description of any alternative solutions or features you've considered.-->
**Additional context**
<!--Add any other context or screenshots about the feature request here.-->
.github/stale.yml
View file @ 9d79ab6d
......@@ -4,19 +4,28 @@ daysUntilStale: 180
daysUntilClose: 7
# Issues with these labels will never be considered stale
exemptLabels:
- Never Stale
- Induction
- Roadmap
# Label to use when marking an issue as stale
staleLabel: Stale
# Comment to post when marking an issue as stale. Set to `false` to disable
markComment: >
This issue has been automatically marked as stale because it has not had
recent activity. It will be closed in 7 days if no further activity occurs.
If you feel this is incorrect please comment to keep it alive, with a reason
why.
activity in 6 months. It will be closed in 7 days if no further activity occurs.
Allowing issues to close as stale helps us filter out issues which can wait
for future development time. All issues closed by stale bot act like normal issues; they can be searched for, commented on or reopened at any point.
If you'd like a closed stale issue to be considered,
feel free to either re-open the issue directly or contact a developer.
To extend the lifetime of an issue please comment below,
it helps us see that this is still affecting you and you want
it fixed in the near-future. Extending the lifetime of an issue
may cause the development team to prioritise it over other issues,
which may be closed as stale instead.
To prevent closure, e.g. for long-term planning issues,
add the "Never Stale" label.
# Comment to post when closing a stale issue. Set to `false` to disable
closeComment: >
This issue has been closed automatically. If this still affects you please
re-open this issue with a comment so we can look into resolving it.
re-open this issue with a comment or contact us so we can look into resolving it.
.gitignore
View file @ 9d79ab6d
......@@ -13,6 +13,9 @@ cmake_install.cmake
install_manifest.txt
compile_commands.json
# Ignore CMakeUserPresets
CMakeUserPresets.json
# Compiled Object files
*.slo
......@@ -28,8 +31,9 @@ compile_commands.json
*.la
*.a
# Compiled python files
*.py[co]
# Byte-compiled / optimized files
__pycache__/
*.py[cod]
# Eclipse-generated files
*.pydevproject
......@@ -76,6 +80,9 @@ local.properties
#Test results
*.log
#Coverage results
*.gcov
# Build results
build/
/[Rr]elease/
......@@ -99,11 +106,8 @@ build/
.builds
*.egg-info/
Framework/Kernel/inc/MantidKernel/GitHubApiHelper.h
Vates/VatesSimpleGui/ViewWidgets/inc/MantidVatesSimpleGuiViewWidgets/LibHelper.h
qt/python/mantidqt/resources.py
qt/applications/workbench/workbench/app/resources.py
qt/applications/workbench/setup.py
qt/python/setup.py
# Visual C++ cache files
ipch/
......@@ -164,11 +168,13 @@ Thumbs.db
# Folder config file
Desktop.ini
# PyCharm IDE
# CLion and PyCharm IDE
.idea/
cmake-build-*/
# VSCode
.vscode/
.cache/
.clangd/
XDG_CACHE_HOME/
# The file that contains metadata for VSCode Workspace
......@@ -187,3 +193,10 @@ Third_Party/
win64/
dbg/
rel/
# NFS files
*.nfs*
# in source installed conda
mambaforge/
miniconda3/
.pre-commit-config.yaml 0 → 100644
View file @ 9d79ab6d
default_language_version:
python: python3
exclude: ^$|instrument/
repos:
# Run fast code improvement/checks before running PR specific helpers.
- repo: https://github.com/pre-commit/pre-commit-hooks.git
rev: 2618198e9658cccb4a53f04af0f7d642109f3b54
hooks:
- id: trailing-whitespace
args: [--markdown-linebreak-ext=md]
exclude: .patch$
- id: check-added-large-files
args: ['--maxkb=4096']
- id: check-xml