diff --git a/Code/Mantid/Algorithms/test/MuonAsymmetryCalcTest.h b/Code/Mantid/Algorithms/test/MuonAsymmetryCalcTest.h
index 418de72b77eb0ba08054125e9515ec7ef6901176..9b19071be9654cfd7b220c9cd1736d6afbb7be26 100644
--- a/Code/Mantid/Algorithms/test/MuonAsymmetryCalcTest.h
+++ b/Code/Mantid/Algorithms/test/MuonAsymmetryCalcTest.h
@@ -43,7 +43,7 @@ public:
 
     //Load the muon nexus file
     loader.initialize();
-    loader.setPropertyValue("Filename", "../../../../Test/Nexus/emu00006473.nxs");
+    loader.setPropertyValue("Filename", "../../../../Test/AutoTestData/emu00006473.nxs");
     loader.setPropertyValue("OutputWorkspace", "EMU6473");
     TS_ASSERT_THROWS_NOTHING( loader.execute() );
     TS_ASSERT_EQUALS(loader.isExecuted(),true);
diff --git a/Code/Mantid/Algorithms/test/MuonRemoveExpDecayTest.h b/Code/Mantid/Algorithms/test/MuonRemoveExpDecayTest.h
index 7066d125a91b2a26898d3a78710f6949aacfa623..82c1358be4fa1702bdcaedcddea47c556a3f34a8 100644
--- a/Code/Mantid/Algorithms/test/MuonRemoveExpDecayTest.h
+++ b/Code/Mantid/Algorithms/test/MuonRemoveExpDecayTest.h
@@ -40,7 +40,7 @@ public:
 #ifndef _WIN64
 
     loader.initialize();
-    loader.setPropertyValue("Filename", "../../../../Test/Nexus/emu00006473.nxs");
+    loader.setPropertyValue("Filename", "../../../../Test/AutoTestData/emu00006473.nxs");
     loader.setPropertyValue("OutputWorkspace", "EMU6473");
     TS_ASSERT_THROWS_NOTHING( loader.execute() );
     TS_ASSERT_EQUALS(loader.isExecuted(),true);
diff --git a/Code/Mantid/Algorithms/test/PlotAsymmetryByLogValueTest.h b/Code/Mantid/Algorithms/test/PlotAsymmetryByLogValueTest.h
index 90e67cb7f9e17449112fc2da631e801211985978..18daeced51d8f0d99636b2fa1f5153426bc1137f 100644
--- a/Code/Mantid/Algorithms/test/PlotAsymmetryByLogValueTest.h
+++ b/Code/Mantid/Algorithms/test/PlotAsymmetryByLogValueTest.h
@@ -20,7 +20,7 @@ class PlotAsymmetryByLogValueTest : public CxxTest::TestSuite
 public:
 
     PlotAsymmetryByLogValueTest()
-      :firstRun("../../../../Test/Nexus/MUSR00015189.nxs"),lastRun("../../../../Test/Nexus/MUSR00015199.nxs")
+      :firstRun("../../../../Test/AutoTestData/MUSR00015189.nxs"),lastRun("../../../../Test/AutoTestData/MUSR00015199.nxs")
     {
     }
 
diff --git a/Code/Mantid/Algorithms/test/RemoveBinsTest.h b/Code/Mantid/Algorithms/test/RemoveBinsTest.h
index 702d060d2065ea44fb9723af344ec29e4187e1cc..7f763c04aae647fe1dbd0f6554a7a723b45fd6ec 100644
--- a/Code/Mantid/Algorithms/test/RemoveBinsTest.h
+++ b/Code/Mantid/Algorithms/test/RemoveBinsTest.h
@@ -187,7 +187,7 @@ public:
 #ifndef _WIN64
 		Mantid::NeXus::LoadMuonNexus loader;
 		loader.initialize();
-		loader.setPropertyValue("Filename", "../../../../Test/Nexus/emu00006473.nxs");
+		loader.setPropertyValue("Filename", "../../../../Test/AutoTestData/emu00006473.nxs");
 		loader.setPropertyValue("OutputWorkspace", "EMU6473");
 		loader.execute();
 		
diff --git a/Code/Mantid/Algorithms/test/WeightedMeanTest.h b/Code/Mantid/Algorithms/test/WeightedMeanTest.h
index 1b07bf91addc9c9262007cf90dae727638ce69a8..82b041db868707b996db9f9e20d9b71a2479fb6e 100644
--- a/Code/Mantid/Algorithms/test/WeightedMeanTest.h
+++ b/Code/Mantid/Algorithms/test/WeightedMeanTest.h
@@ -38,7 +38,7 @@ public:
 
     Mantid::DataHandling::LoadRaw3 loader;
     loader.initialize();
-    loader.setPropertyValue("Filename","../../../../Test/Data/OFFSPEC00004622.raw");
+    loader.setPropertyValue("Filename","../../../../Test/AutoTestData/OFFSPEC00004622.raw");
     loader.setPropertyValue("OutputWorkspace","first");
     loader.setPropertyValue("SpectrumList","1");
     loader.setPropertyValue("LoadLogFiles","0");
@@ -46,7 +46,7 @@ public:
 
     Mantid::DataHandling::LoadRaw3 loader2;
     loader2.initialize();
-    loader2.setPropertyValue("Filename","../../../../Test/Data/OFFSPEC00004622.raw");
+    loader2.setPropertyValue("Filename","../../../../Test/AutoTestData/OFFSPEC00004622.raw");
     loader2.setPropertyValue("OutputWorkspace","second");
     loader2.setPropertyValue("SpectrumList","2");
     loader2.setPropertyValue("LoadLogFiles","0");