diff --git a/Framework/MDAlgorithms/src/ConvertCWSDExpToMomentum.cpp b/Framework/MDAlgorithms/src/ConvertCWSDExpToMomentum.cpp
index 5bb6cc662e53abe742bfb355143983a89573ce5d..22507befa430a047f4f1cb757bc943df762b53df 100644
--- a/Framework/MDAlgorithms/src/ConvertCWSDExpToMomentum.cpp
+++ b/Framework/MDAlgorithms/src/ConvertCWSDExpToMomentum.cpp
@@ -415,6 +415,13 @@ void ConvertCWSDExpToMomentum::convertSpiceMatrixToMomentumMDEvents(
}
expinfo->mutableRun().setGoniometer(dataws->run().getGoniometer(), false);
expinfo->mutableRun().addProperty("run_number", runnumber);
+ // Add all the other propertys from original data workspace
+ const std::vector<Kernel::Property *> vec_property =
+ dataws->run().getProperties();
+ for (size_t i = 0; i < vec_property.size(); ++i) {
+ expinfo->mutableRun().addProperty(vec_property[i]->clone());
+ }
+
m_outputWS->addExperimentInfo(expinfo);
return;
diff --git a/Framework/Properties/Mantid.properties.template b/Framework/Properties/Mantid.properties.template
index 27e669d1d7ff7c2297397b120797a006c97aa4b6..9b160ba84bb9860cdd4b2237dc08e7576198f65b 100644
--- a/Framework/Properties/Mantid.properties.template
+++ b/Framework/Properties/Mantid.properties.template
@@ -16,7 +16,7 @@ default.facility = ISIS
default.instrument =
# Set of PyQt interfaces to add to the Interfaces menu, separated by a space. Interfaces are seperated from their respective categories by a "/".
-mantidqt.python_interfaces = Direct/DGS_Reduction.py Direct/DGSPlanner.py SANS/ORNL_SANS.py Reflectometry/REFL_Reduction.py Reflectometry/REFL_SF_Calculator.py Reflectometry/REFM_Reduction.py Utility/TofConverter.py Reflectometry/ISIS_Reflectometry.py Diffraction/Powder_Diffraction_Reduction.py Utility/FilterEvents.py Diffraction/HFIR_Powder_Diffraction_Reduction.py
+mantidqt.python_interfaces = Direct/DGS_Reduction.py Direct/DGSPlanner.py SANS/ORNL_SANS.py Reflectometry/REFL_Reduction.py Reflectometry/REFL_SF_Calculator.py Reflectometry/REFM_Reduction.py Utility/TofConverter.py Reflectometry/ISIS_Reflectometry.py Diffraction/Powder_Diffraction_Reduction.py Utility/FilterEvents.py Diffraction/HFIR_Powder_Diffraction_Reduction.py Diffraction/HFIR_4Circle_Reduction.py
mantidqt.python_interfaces_directory = @MANTID_ROOT@/scripts
diff --git a/docs/source/algorithms/ConvertCWSDExpToMomentum-v1.rst b/docs/source/algorithms/ConvertCWSDExpToMomentum-v1.rst
index 904b8dd2a5ccd21368da10509b6c936c4aa5fe42..1d88cdd45e69e58036d500ee26a3af2f5b079de6 100644
--- a/docs/source/algorithms/ConvertCWSDExpToMomentum-v1.rst
+++ b/docs/source/algorithms/ConvertCWSDExpToMomentum-v1.rst
@@ -19,18 +19,22 @@ In this algorithm's name, ConvertCWSDToMomentum, *CW* stands for constant wave
This algorithm takes ??? as inputs.
Futhermore, the unit of the output matrix workspace can be converted to
-momentum transfer (:math:`Q`).
+momentum transfer (Q).
Outline of algorithm
####################
-1. Create output workspace.
+1. Create output workspace
+
* Build a virtual instrument, requiring
+
- position of source
- position of sample
- detector ID, position, detector size of pixels
+
2. Read in data via table workspace
+
* From each row, (1) file name and (2) starting detector ID are read in.
* Detector position in (virtual) instrument of MDEventWorkspace is compared with the position in MatrixWorkspace
* Momentum is calcualted by goniometry values
@@ -75,8 +79,6 @@ Each MDEvent in output MDEventWorkspace contain
* Detector ID
* Run Number
-
-
Combine Experiment Into One MDEventWorkspace
--------------------------------------------
@@ -90,7 +92,7 @@ In order to integrate them into an organized data structure, i.e., *MDEventWorks
a virtual instrument is built in the algorithm.
Virtual instrument
-==================
+##################
A virtual instrument is built in the algorithm.
In this virtual instrument, the number of detectors and their position are determined
@@ -98,13 +100,13 @@ by the number of individual detector's positions in the *experiment*.
MDEventWorkspace
-================
+################
There is only one *virtual* instrument and *N* ExperimentInfo.
*N* is the total number of experiment points in the *experiment*.
Inconsistency between using virtual instrument and copying instrument
-=====================================================================
+#####################################################################
It is found that the results, i.e., the peak's position in sample-momentum
space, by FindPeaksMD, are different betweent the MDEventWorkspaces
@@ -145,7 +147,7 @@ with 2D angular detector.
Usage
-----
-**Example - convert an HB3A's experiment to MDWorkspace in sample momentum workspae and creating virtual instrument.:**
+**Example - convert an HB3A's experiment to MDWorkspace in sample momentum workspae and creating virtual instrument**
.. testcode:: ExConvertHB3AToMDVirtualInstrument
diff --git a/docs/source/interfaces/HFIR_4Circle_Reduction.rst b/docs/source/interfaces/HFIR_4Circle_Reduction.rst
new file mode 100644
index 0000000000000000000000000000000000000000..01c42636b87472ebfb13e637f5a3ceb0597b8c99
--- /dev/null
+++ b/docs/source/interfaces/HFIR_4Circle_Reduction.rst
@@ -0,0 +1,116 @@
+HFIR Single Crystal Reduction Interface
+=======================================
+
+.. contents:: Table of Contents
+ :local:
+
+Overview
+--------
+
+HFIR single crystalreduction interface is a GUI to download, view and reduce data from
+HFIR's four-circle single crystal diffractometer in SPICE format.
+
+
+Introduction of Tabs
+--------------------
+
+ 1. **Setup and Data Access**: Configure the instrument name, data server URL and directories.
+
+ - Configure the instrument name;
+ - Set up and test HB3A data server's URL;
+ - Configure the directory to save raw data;
+ - Configure the directory to save working result;
+ - Download data from server;
+
+ 2. **View Raw Data**: View 2D image of counts on detector of one measurement.
+
+ - Plot the counts of the 256 by 256 2D detector;
+
+ 3. **Calculate UB**: Calculate UB matrix.
+
+ - Find peak in one measurement;
+ - Option to load Miller index directly from SPICE file;
+ - Calculate UB matrix;
+ - Re-index the peaks;
+
+ 4. **Merge Scan**: Merge all the measurements in a scan.
+
+ - Merge all measuring points in a scan to an MDEventWorkspace in HKL-frame or Q-sample-frame;
+ - Allow various ways to set up UB matrix
+
+ 5. **Refine UB**: Refine UB matrix
+
+ - Disabled becaues it is in development still;
+
+ 6. **Peak Integration**: Integrate peaks
+
+ - Disabled because it is still in development.
+
+Use Cases
+---------
+
+Here are some use cases that can be used as examples.
+
+
+Workflow to calculate UB matrix
++++++++++++++++++++++++++++++++
+
+Here is a typical use case to calculate UB matrix
+
+ 1. User specifies *Experiment* and pushes button *Set*
+
+ 2. User enters tab *View Raw Data*
+
+ 3. User inputs scan number and list all the measuring points
+
+ 4. User views all the measurements
+
+ 5. User finds out the measurement with the strongest reflection and push button use
+
+ 6. GUI shifts to tab *Calculate UB* automatically
+
+ 7. User pushes button *Find Peak* with checking *Load HKL from file*
+
+ 8. GUI finds the peak center and load HKL
+
+ 9. User pushes button *Add peak* to add the peak to table
+
+ 10. User repeats step 2 to 9 to add other peaks
+
+ 11. User select the peaks that are linearly independent and pushes *Calcualte UB*
+
+ 12. GUI calculates UB matrix and show the result
+
+ 13. User may push *Index peak* to use the calculated UB matrix to index peaks in the table to check UB matrix.
+
+
+Workflow to merge measurements in scan
+++++++++++++++++++++++++++++++++++++++
+
+Here is a typical use case to merge all the measuring points (Pt.) in a scan.
+
+ 1. User specifies *Experiment* and pushes button *Set*
+
+ 2. User enters tab *Merge Scan*
+
+ 3. User specifies the UB matrix either by *From tab Calculate UB* or by entering the values to text editor
+
+ 4. User pushes button *Set*.
+
+ 5. User specifies the frame in which the merged data will be in. If the target frame is Q-Sample-Sapce, then there is
+ no need to specify UB matrix;
+
+ 6. User specifies the scan numbers and push button *Add*;
+
+ 7. User specifies the base name for the output MDEventWorkspaces;
+
+ 8. User pushes button *Process*;
+
+ 9. User goes to MantidPlot to view the merged scan by SliceView or Vates.
+
+
+
+Limitation
+----------
+
+- HFIR single crystal reduction GUI supports for instrument HB3A only from release 3.5.0 and nightly.
diff --git a/scripts/CMakeLists.txt b/scripts/CMakeLists.txt
index 7c00c508283118881ab92f0d7c8e6b079bc1f0f3..7cd45300f74869139a60cf613343c6613fe322d6 100644
--- a/scripts/CMakeLists.txt
+++ b/scripts/CMakeLists.txt
@@ -6,6 +6,7 @@ add_subdirectory(Interface/ui)
add_subdirectory(lib1to2/gui)
add_subdirectory(PyChop)
add_subdirectory(TofConverter)
+add_subdirectory(HFIR_4Circle_Reduction)
# Chain all required interface custom targets into CompilePyUI
add_custom_target(CompilePyUI DEPENDS
@@ -15,6 +16,7 @@ add_custom_target(CompilePyUI DEPENDS
CompileUITofConverter
CompileUIUI
CompileUILib1To2
+ CompileUIHFIR_4Circle_Reduction
)
set ( TEST_PY_FILES
diff --git a/scripts/HFIR_4Circle_Reduction.py b/scripts/HFIR_4Circle_Reduction.py
new file mode 100644
index 0000000000000000000000000000000000000000..89742c6bfa9f75bb50d994cf3148f7d9e1c84476
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction.py
@@ -0,0 +1,17 @@
+#pylint: disable=invalid-name
+from HFIR_4Circle_Reduction import reduce4circleGUI
+from PyQt4 import QtGui
+import sys
+
+def qapp():
+ if QtGui.QApplication.instance():
+ _app = QtGui.QApplication.instance()
+ else:
+ _app = QtGui.QApplication(sys.argv)
+ return _app
+
+app = qapp()
+
+reducer = reduce4circleGUI.MainWindow() #the main ui class in this file is called MainWindow
+reducer.show()
+app.exec_()
diff --git a/scripts/HFIR_4Circle_Reduction/CMakeLists.txt b/scripts/HFIR_4Circle_Reduction/CMakeLists.txt
new file mode 100644
index 0000000000000000000000000000000000000000..67fe46df205d951ff83380c933f71c88d5325604
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/CMakeLists.txt
@@ -0,0 +1,8 @@
+include(UiToPy)
+
+# List of UIs to Auto convert
+set( UI_FILES
+ MainWindow.ui
+)
+
+UiToPy( UI_FILES CompileUIHFIR_4Circle_Reduction)
diff --git a/scripts/HFIR_4Circle_Reduction/MainWindow.ui b/scripts/HFIR_4Circle_Reduction/MainWindow.ui
new file mode 100644
index 0000000000000000000000000000000000000000..4f7fa462e7008c7cf9e167e822ad5b0b47996aca
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/MainWindow.ui
@@ -0,0 +1,2312 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>MainWindow</class>
+ <widget class="QMainWindow" name="MainWindow">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>1292</width>
+ <height>783</height>
+ </rect>
+ </property>
+ <property name="windowTitle">
+ <string>4-Circle Reduction</string>
+ </property>
+ <widget class="QWidget" name="centralwidget">
+ <layout class="QHBoxLayout" name="horizontalLayout_11">
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_General">
+ <item>
+ <widget class="QLabel" name="label_exp">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Experiment</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_exp">
+ <property name="minimumSize">
+ <size>
+ <width>40</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_setExp">
+ <property name="text">
+ <string>Set</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_11">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_15">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Unit Cell</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_16">
+ <property name="text">
+ <string>a</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_a">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_23">
+ <property name="text">
+ <string>b</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_b">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_24">
+ <property name="text">
+ <string>c</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_c">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_25">
+ <property name="text">
+ <string>alpha</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_alpha">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_26">
+ <property name="text">
+ <string>beta</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_beta">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_27">
+ <property name="text">
+ <string>gamma</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_gamma">
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_Tab">
+ <item>
+ <widget class="QTabWidget" name="tabWidget">
+ <property name="enabled">
+ <bool>true</bool>
+ </property>
+ <property name="currentIndex">
+ <number>0</number>
+ </property>
+ <widget class="QWidget" name="tab">
+ <attribute name="title">
+ <string>Setup && Data Access</string>
+ </attribute>
+ <layout class="QGridLayout" name="gridLayout_5">
+ <item row="1" column="0">
+ <widget class="QTextEdit" name="textEdit">
+ <property name="enabled">
+ <bool>true</bool>
+ </property>
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="readOnly">
+ <bool>true</bool>
+ </property>
+ <property name="html">
+ <string><!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0//EN" "http://www.w3.org/TR/REC-html40/strict.dtd">
+<html><head><meta name="qrichtext" content="1" /><style type="text/css">
+p, li { white-space: pre-wrap; }
+</style></head><body style=" font-family:'Ubuntu'; font-size:11pt; font-weight:400; font-style:normal;">
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-weight:600;">1. Configure the data reduction</span></p>
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-style:italic;">(a) Do not modify ServerURL unless necessary;</span></p>
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-style:italic;">(b) Click 'Apply' to check internet connection and directories;</span></p>
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-style:italic;">(c) If 'Time out' is popped out, try to click 'Apply' again. Server may not be able to respond promptly.</span></p>
+<p style="-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-size:10pt; font-style:italic;"><br /></p>
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-weight:600;">2. Start to reduce data</span></p>
+<p style=" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;"><span style=" font-size:10pt; font-style:italic;">(a) Set</span><span style=" font-size:10pt;"> Experiment</span></p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ <item row="6" column="0">
+ <spacer name="verticalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item row="0" column="0">
+ <widget class="QGroupBox" name="groupBox">
+ <property name="title">
+ <string>Configuration</string>
+ </property>
+ <layout class="QGridLayout" name="gridLayout_11">
+ <item row="1" column="2">
+ <widget class="QPushButton" name="pushButton_testURLs">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>200</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Test</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="2">
+ <widget class="QPushButton" name="pushButton_browseLocalDataDir">
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="3">
+ <spacer name="horizontalSpacer">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item row="2" column="1">
+ <widget class="QLineEdit" name="lineEdit_localSpiceDir">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Directory for local data storage</p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_instrument">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="text">
+ <string>Instrument</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="0">
+ <widget class="QLabel" name="label_dir">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>80</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Directory for local data storage</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Data Directory</string>
+ </property>
+ <property name="alignment">
+ <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QComboBox" name="comboBox_instrument">
+ <item>
+ <property name="text">
+ <string>HB3A</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="0" column="2">
+ <widget class="QPushButton" name="pushButton_useDefaultDir">
+ <property name="font">
+ <font>
+ <pointsize>10</pointsize>
+ </font>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Use default set up</p><p><br/></p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Load Default</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="1">
+ <widget class="QLineEdit" name="lineEdit_workDir">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Directory to save outcome of the data reduction</p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLineEdit" name="lineEdit_url">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_url">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>80</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>URL of the http server to download HB3A data</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Server URL</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="2">
+ <widget class="QPushButton" name="pushButton_browseWorkDir">
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="0">
+ <widget class="QLabel" name="label_2">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>140</width>
+ <height>1</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>140</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Directory to save outcome of the data reduction</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Working Direcotry</string>
+ </property>
+ </widget>
+ </item>
+ <item row="4" column="2">
+ <widget class="QPushButton" name="pushButton_applySetup">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Apply</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item row="4" column="0">
+ <widget class="QGroupBox" name="groupBox_2">
+ <property name="title">
+ <string>Data Download</string>
+ </property>
+ <layout class="QGridLayout" name="gridLayout_12">
+ <item row="0" column="2">
+ <widget class="QPushButton" name="pushButton_browseLocalCache">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>100</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Browse</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="0">
+ <widget class="QLabel" name="label">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>80</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Scans List</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QComboBox" name="comboBox_mode">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Mode &quot;download&quot;: download data to local disk;</p><p>Mode &quot;http server only&quot;: download data to cache, process and delete cached data upon returning</p></body></html></string>
+ </property>
+ <item>
+ <property name="text">
+ <string>Download Complete Experiment</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>Download Selected Scans</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="lineEdit_localSrcDir">
+ <property name="toolTip">
+ <string><html><head/><body><p>Cache on local disk. The dowloaded data will be saved to here. </p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_datamode">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>80</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Download Mode</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_4">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>140</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>140</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Destination</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="6">
+ <spacer name="horizontalSpacer_2">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Minimum</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item row="1" column="2">
+ <widget class="QPushButton" name="pushButton_downloadExpData">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p><span style=" font-weight:400;">Download scans specified by 'Scans List'; </span></p><p><span style=" font-weight:400;">If 'Scans List' is empty, then the complete experiment data will be downloaded</span></p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Download</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="1">
+ <widget class="QLineEdit" name="lineEdit_downloadScans"/>
+ </item>
+ <item row="2" column="2">
+ <widget class="QPushButton" name="pushButton_ListScans">
+ <property name="text">
+ <string>List Scans</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item row="3" column="0">
+ <spacer name="verticalSpacer_4">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="tab_4">
+ <attribute name="title">
+ <string>View Raw Data</string>
+ </attribute>
+ <layout class="QGridLayout" name="gridLayout_9">
+ <item row="0" column="0">
+ <layout class="QGridLayout" name="gridLayout_3">
+ <item row="0" column="3">
+ <layout class="QVBoxLayout" name="verticalLayout_5">
+ <item>
+ <layout class="QGridLayout" name="gridLayout"/>
+ </item>
+ <item>
+ <widget class="QGroupBox" name="groupBox_3">
+ <property name="title">
+ <string>Scan</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout">
+ <item>
+ <widget class="QLineEdit" name="lineEdit_run">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>10</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>10000</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="alignment">
+ <set>Qt::AlignCenter</set>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_setScanInfo">
+ <property name="text">
+ <string>Set</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_showPtList">
+ <property name="text">
+ <string>List Pt.</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <widget class="Line" name="line">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QGroupBox" name="groupBox_4">
+ <property name="title">
+ <string> Pt</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_2">
+ <item>
+ <widget class="QLineEdit" name="lineEdit_rawDataPtNo">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>60</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>1000</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="alignment">
+ <set>Qt::AlignCenter</set>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_plotRawPt">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>80</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Plot</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_usePt4UB">
+ <property name="toolTip">
+ <string><html><head/><body><p>Use this peak to calcualate UB matrix</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Use</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_5">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Minimum</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_8">
+ <item>
+ <widget class="QPushButton" name="pushButton_prevPtNumber">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>30</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>40</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Previous Pt. No</p></body></html></string>
+ </property>
+ <property name="text">
+ <string><---|</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_7">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>5</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_nextPtNumber">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>30</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>40</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>|--></string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_6">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ <item row="0" column="0">
+ <widget class="MplGraphicsView" name="graphicsView">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="tab_2">
+ <attribute name="title">
+ <string>Calculate UB</string>
+ </attribute>
+ <layout class="QGridLayout" name="gridLayout_6">
+ <item row="0" column="0">
+ <layout class="QVBoxLayout" name="verticalLayout_4">
+ <item>
+ <widget class="QGroupBox" name="groupBox_7">
+ <property name="title">
+ <string>Add Peak</string>
+ </property>
+ <layout class="QGridLayout" name="gridLayout_2">
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_scanNo">
+ <property name="text">
+ <string>Scan Number</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="8">
+ <widget class="QLineEdit" name="lineEdit_H">
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>40</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="2">
+ <widget class="QLabel" name="label_PtNo">
+ <property name="text">
+ <string>Pt Number</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="12">
+ <widget class="QLineEdit" name="lineEdit_sampleQy">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="11">
+ <widget class="QLabel" name="label_11">
+ <property name="text">
+ <string>K</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="13">
+ <widget class="QLabel" name="label_6">
+ <property name="text">
+ <string>L</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="8">
+ <widget class="QLineEdit" name="lineEdit_sampleQx">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="6">
+ <widget class="QLabel" name="label_7">
+ <property name="text">
+ <string> Q-Sample </string>
+ </property>
+ <property name="alignment">
+ <set>Qt::AlignLeading|Qt::AlignLeft|Qt::AlignVCenter</set>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="3">
+ <widget class="QLineEdit" name="lineEdit_ptNumber">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="11">
+ <widget class="QLabel" name="label_9">
+ <property name="text">
+ <string>Y</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="14">
+ <widget class="QLineEdit" name="lineEdit_sampleQz">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>120</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="7">
+ <widget class="QLabel" name="label_8">
+ <property name="text">
+ <string>X</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="lineEdit_scanNumber">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="12">
+ <widget class="QLineEdit" name="lineEdit_K">
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="14">
+ <widget class="QLineEdit" name="lineEdit_L">
+ <property name="maximumSize">
+ <size>
+ <width>60</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="7">
+ <widget class="QLabel" name="label_12">
+ <property name="text">
+ <string>H</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="13">
+ <widget class="QLabel" name="label_10">
+ <property name="text">
+ <string>Z</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="5">
+ <spacer name="horizontalSpacer_4">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item row="0" column="6">
+ <widget class="QLabel" name="label_31">
+ <property name="text">
+ <string>Miller Index</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="4">
+ <widget class="QPushButton" name="pushButton_findPeak">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Find Peak</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="4">
+ <widget class="QCheckBox" name="checkBox_loadHKLfromFile">
+ <property name="font">
+ <font>
+ <pointsize>9</pointsize>
+ </font>
+ </property>
+ <property name="text">
+ <string>Load HKL from file</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_7">
+ <item>
+ <widget class="UBMatrixPeakTable" name="tableWidget_peaksCalUB"/>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_8">
+ <item>
+ <widget class="QPushButton" name="pushButton_addPeakToCalUB">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Add Peak</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QCheckBox" name="checkBox_roundHKLInt">
+ <property name="font">
+ <font>
+ <pointsize>9</pointsize>
+ </font>
+ </property>
+ <property name="text">
+ <string>RoundHKL to int</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_11">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_deleteUBPeak">
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>200</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Delete</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_clearUBPeakTable">
+ <property name="text">
+ <string>Clear</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_7">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_13">
+ <item>
+ <widget class="QLabel" name="label_32">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Expanding" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="font">
+ <font>
+ <pointsize>14</pointsize>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>UB Matrix</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_6">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="UBMatrixTable" name="tableWidget_ubMatrix">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="minimumSize">
+ <size>
+ <width>360</width>
+ <height>0</height>
+ </size>
+ </property>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_5">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_12">
+ <item>
+ <widget class="QPushButton" name="pushButton_calUB">
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>100</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Calculate UB</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_8">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Ignored</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_acceptUB">
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>100</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Accept</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_9">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_8">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Ignored</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_9">
+ <item>
+ <widget class="QPushButton" name="pushButton_indexUBPeaks">
+ <property name="minimumSize">
+ <size>
+ <width>100</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>100</width>
+ <height>16777215</height>
+ </size>
+ </property>
+ <property name="text">
+ <string>Index Peak</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_12">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Ignored</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_resetPeakHKLs">
+ <property name="text">
+ <string>Reset HKL</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="tab_advsetup">
+ <attribute name="title">
+ <string>Merge Scan</string>
+ </attribute>
+ <layout class="QHBoxLayout" name="horizontalLayout_2">
+ <item>
+ <widget class="QGroupBox" name="groupBox_5">
+ <property name="title">
+ <string>UB Matrix</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_13">
+ <item>
+ <widget class="UBMatrixTable" name="tableWidget_ubSiceView">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Preferred">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ <property name="maximumSize">
+ <size>
+ <width>16777215</width>
+ <height>150</height>
+ </size>
+ </property>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <item row="0" column="0">
+ <property name="text">
+ <string>1</string>
+ </property>
+ </item>
+ <item row="1" column="1">
+ <property name="text">
+ <string>1</string>
+ </property>
+ </item>
+ <item row="2" column="2">
+ <property name="text">
+ <string>1</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_13">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Ignored</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <layout class="QGridLayout" name="gridLayout_4">
+ <item row="0" column="2">
+ <widget class="QLabel" name="label_3">
+ <property name="text">
+ <string>From tab 'Caclulate UB'</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QRadioButton" name="radioButton_ubFromTab1">
+ <property name="text">
+ <string/>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <spacer name="horizontalSpacer_9">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Preferred</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item row="2" column="0">
+ <widget class="QRadioButton" name="radioButton_ubFromTab3">
+ <property name="enabled">
+ <bool>false</bool>
+ </property>
+ <property name="text">
+ <string/>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="2">
+ <widget class="QLabel" name="label_28">
+ <property name="text">
+ <string>From tab 'Refine UB'</string>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="2">
+ <widget class="QPlainTextEdit" name="plainTextEdit_ubInput">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Minimum">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item row="3" column="0">
+ <layout class="QVBoxLayout" name="verticalLayout_15">
+ <item>
+ <widget class="QRadioButton" name="radioButton_ubFromList">
+ <property name="text">
+ <string/>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_15">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_14">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Ignored</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_setUBSliceView">
+ <property name="text">
+ <string>Set</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="verticalSpacer_10">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <widget class="QGroupBox" name="groupBox_6">
+ <property name="title">
+ <string>Process Data</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_14">
+ <item>
+ <layout class="QGridLayout" name="gridLayout_10">
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_29">
+ <property name="toolTip">
+ <string><html><head/><body><p>For MDEventsWorkspace with merged runs</p><p><br/></p><p>For example:</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Base Workspace Name</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_30">
+ <property name="text">
+ <string>Scans List</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="lineEdit_listScansSliceView"/>
+ </item>
+ <item row="0" column="2">
+ <widget class="QPushButton" name="pushButton_addScanSliceView">
+ <property name="text">
+ <string>Add</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <layout class="QHBoxLayout" name="horizontalLayout">
+ <item>
+ <widget class="QLineEdit" name="lineEdit_baseMergeMDName">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QComboBox" name="comboBox_mergeScanFrame">
+ <property name="minimumSize">
+ <size>
+ <width>140</width>
+ <height>0</height>
+ </size>
+ </property>
+ <property name="toolTip">
+ <string><html><head/><body><p>Type of frame that the final merged scan will be in.</p></body></html></string>
+ </property>
+ <item>
+ <property name="text">
+ <string>HKL-Space</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>Q-Sample-Space</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_10">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeType">
+ <enum>QSizePolicy::Expanding</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </item>
+ <item row="1" column="2">
+ <widget class="QPushButton" name="pushButton_process4SliceView">
+ <property name="font">
+ <font>
+ <weight>75</weight>
+ <bold>true</bold>
+ </font>
+ </property>
+ <property name="text">
+ <string>Process</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <widget class="ProcessTableWidget" name="tableWidget_sliceViewProgress">
+ <property name="toolTip">
+ <string><html><head/><body><p>? columns: </p><p><br/></p><p>1. Scan number</p><p>2. Number of Pts.</p><p>3. Status: </p><p>(a) done</p><p>(b) error with error message</p><p>(c) on-going</p><p>(d) empty as not yet</p></body></html></string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="tab_3">
+ <attribute name="title">
+ <string>Refine UB</string>
+ </attribute>
+ <layout class="QGridLayout" name="gridLayout_8">
+ <item row="0" column="0">
+ <layout class="QVBoxLayout" name="verticalLayout_6">
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_14">
+ <item>
+ <widget class="QLabel" name="label_14">
+ <property name="text">
+ <string>Scan</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_scanRefineUB">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Maximum" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLabel" name="label_13">
+ <property name="text">
+ <string>Pt.</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QLineEdit" name="lineEdit_ptRefineUB">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_addToRefine">
+ <property name="toolTip">
+ <string><html><head/><body><p>Add a data point or data points (defined by scan number and pt number) to the list to refine UB matrix; </p><p><br/></p><p>Scan number can be a list of integers;</p><p><br/></p><p>Pt number can be empty such that all Pt. of that scan will be searched for peak and then used to refine UB matrix</p></body></html></string>
+ </property>
+ <property name="text">
+ <string>Add</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <spacer name="horizontalSpacer_3">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_addAllRefineUB">
+ <property name="text">
+ <string>Add All</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout_15">
+ <item>
+ <widget class="UBMatrixTable" name="tableWidget_refinedUB">
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <row>
+ <property name="text">
+ <string/>
+ </property>
+ </row>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ <column>
+ <property name="text">
+ <string/>
+ </property>
+ </column>
+ </widget>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_7"/>
+ </item>
+ <item>
+ <layout class="QVBoxLayout" name="verticalLayout_10">
+ <item>
+ <widget class="QPushButton" name="pushButton_acceptRefinedUB">
+ <property name="text">
+ <string>Accept</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_resetRefinedUB">
+ <property name="text">
+ <string>Reset</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <layout class="QGridLayout" name="gridLayout_7">
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_17">
+ <property name="text">
+ <string>a</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="2">
+ <widget class="QLabel" name="label_19">
+ <property name="text">
+ <string>c</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="4">
+ <widget class="QLabel" name="label_21">
+ <property name="text">
+ <string>beta</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLabel" name="label_18">
+ <property name="text">
+ <string>b</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="3">
+ <widget class="QLabel" name="label_20">
+ <property name="text">
+ <string>alpha</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="5">
+ <widget class="QLabel" name="label_22">
+ <property name="text">
+ <string>gamma</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLineEdit" name="lineEdit_bUnitCell"/>
+ </item>
+ <item row="1" column="2">
+ <widget class="QLineEdit" name="lineEdit_cUnitCell"/>
+ </item>
+ <item row="1" column="3">
+ <widget class="QLineEdit" name="lineEdit_alphaUnitCell"/>
+ </item>
+ <item row="2" column="1">
+ <widget class="QLineEdit" name="lineEdit_bError"/>
+ </item>
+ <item row="1" column="4">
+ <widget class="QLineEdit" name="lineEdit_betaUnitCell"/>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLineEdit" name="lineEdit_aUnitCell"/>
+ </item>
+ <item row="2" column="2">
+ <widget class="QLineEdit" name="lineEdit_cError"/>
+ </item>
+ <item row="2" column="0">
+ <widget class="QLineEdit" name="lineEdit_aError"/>
+ </item>
+ <item row="2" column="3">
+ <widget class="QLineEdit" name="lineEdit_alphaError"/>
+ </item>
+ <item row="2" column="4">
+ <widget class="QLineEdit" name="lineEdit_betaError"/>
+ </item>
+ <item row="1" column="5">
+ <widget class="QLineEdit" name="lineEdit_gammaUnitCell"/>
+ </item>
+ <item row="2" column="5">
+ <widget class="QLineEdit" name="lineEdit_gammaError"/>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ <item row="1" column="0">
+ <spacer name="verticalSpacer_3">
+ <property name="orientation">
+ <enum>Qt::Vertical</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>20</width>
+ <height>40</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QWidget" name="tab_indexPeak">
+ <attribute name="title">
+ <string>Peak Integration</string>
+ </attribute>
+ <layout class="QVBoxLayout" name="verticalLayout_11">
+ <item>
+ <layout class="QGridLayout" name="gridLayout_13">
+ <item row="1" column="6">
+ <widget class="QCheckBox" name="checkBox_adaptQBkgd">
+ <property name="text">
+ <string>Adaptive Q Background</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="1">
+ <widget class="QLineEdit" name="lineEdit_scanIntegratePeak">
+ <property name="sizePolicy">
+ <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+ <horstretch>0</horstretch>
+ <verstretch>0</verstretch>
+ </sizepolicy>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="0">
+ <widget class="QCheckBox" name="checkBox_cylinder">
+ <property name="text">
+ <string>Cylinder</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="3">
+ <widget class="QLineEdit" name="lineEdit_bkgdInnerR"/>
+ </item>
+ <item row="1" column="5">
+ <widget class="QLineEdit" name="lineEdit_bkgdOuterR"/>
+ </item>
+ <item row="2" column="4">
+ <widget class="QLabel" name="label_36">
+ <property name="text">
+ <string>Percent Background</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="7">
+ <widget class="QCheckBox" name="checkBox_integrateOnEdge">
+ <property name="text">
+ <string>Integrate on Edge</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="0">
+ <widget class="QLabel" name="label_5">
+ <property name="text">
+ <string>Scan Number</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="0">
+ <widget class="QLabel" name="label_34">
+ <property name="text">
+ <string>Peak Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="3">
+ <widget class="QLineEdit" name="lineEdit_ptNumListIntPeak"/>
+ </item>
+ <item row="2" column="7">
+ <widget class="QComboBox" name="comboBox_cylinderIntOption"/>
+ </item>
+ <item row="0" column="7">
+ <widget class="QPushButton" name="pushButton_integratePeak">
+ <property name="text">
+ <string>Integrate Peaks</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="5">
+ <widget class="QLineEdit" name="lineEdit_cylinderBkgdPercent"/>
+ </item>
+ <item row="1" column="4">
+ <widget class="QLabel" name="label_35">
+ <property name="text">
+ <string>Background Outer Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item row="0" column="5">
+ <widget class="QComboBox" name="comboBox_3">
+ <property name="toolTip">
+ <string><html><head/><body><p>Choose the name of the tab, in which the UB matrix is used to convert signals to HKL frame.</p></body></html></string>
+ </property>
+ <item>
+ <property name="text">
+ <string>Calculate UB</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>Merge Scan</string>
+ </property>
+ </item>
+ <item>
+ <property name="text">
+ <string>Refine UB</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="2" column="6">
+ <widget class="QComboBox" name="comboBox_cylinderProfile">
+ <item>
+ <property name="text">
+ <string>Gaussian</string>
+ </property>
+ </item>
+ </widget>
+ </item>
+ <item row="2" column="2">
+ <widget class="QLabel" name="label_39">
+ <property name="text">
+ <string>Cylinder Length</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="2">
+ <widget class="QLabel" name="label_37">
+ <property name="text">
+ <string>Background Inner Radius</string>
+ </property>
+ </widget>
+ </item>
+ <item row="2" column="3">
+ <widget class="QLineEdit" name="lineEdit_cylinderLength"/>
+ </item>
+ <item row="0" column="2">
+ <widget class="QLabel" name="label_33">
+ <property name="text">
+ <string>Pt Numbers</string>
+ </property>
+ </widget>
+ </item>
+ <item row="1" column="1">
+ <widget class="QLineEdit" name="lineEdit_peakRadius"/>
+ </item>
+ </layout>
+ </item>
+ <item>
+ <widget class="IntegratePeaksTableWidget" name="tableWidget_peakIndex"/>
+ </item>
+ </layout>
+ </widget>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <widget class="QMenuBar" name="menubar">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>1292</width>
+ <height>25</height>
+ </rect>
+ </property>
+ <widget class="QMenu" name="menuFile">
+ <property name="title">
+ <string>File</string>
+ </property>
+ <addaction name="separator"/>
+ <addaction name="actionExit"/>
+ <addaction name="separator"/>
+ </widget>
+ <widget class="QMenu" name="menuTools">
+ <property name="title">
+ <string>Tools</string>
+ </property>
+ <addaction name="actionSave_Session"/>
+ <addaction name="actionLoad_Session"/>
+ <addaction name="separator"/>
+ </widget>
+ <addaction name="menuFile"/>
+ <addaction name="menuTools"/>
+ </widget>
+ <widget class="QStatusBar" name="statusbar"/>
+ <action name="actionNew">
+ <property name="text">
+ <string>New</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+N</string>
+ </property>
+ </action>
+ <action name="actionOpen">
+ <property name="text">
+ <string>Open</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+O</string>
+ </property>
+ </action>
+ <action name="actionSave">
+ <property name="text">
+ <string>Save</string>
+ </property>
+ </action>
+ <action name="actionLog">
+ <property name="text">
+ <string>Log</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+L</string>
+ </property>
+ </action>
+ <action name="actionSave_Session">
+ <property name="text">
+ <string>Save Session</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+Shift+S</string>
+ </property>
+ </action>
+ <action name="actionExit">
+ <property name="text">
+ <string>Exit</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+Q</string>
+ </property>
+ </action>
+ <action name="actionLoad_Session">
+ <property name="text">
+ <string>Load Session</string>
+ </property>
+ <property name="shortcut">
+ <string>Ctrl+Shift+L</string>
+ </property>
+ </action>
+ </widget>
+ <customwidgets>
+ <customwidget>
+ <class>MplGraphicsView</class>
+ <extends>QGraphicsView</extends>
+ <header>mplgraphicsview.h</header>
+ </customwidget>
+ <customwidget>
+ <class>UBMatrixPeakTable</class>
+ <extends>QTableWidget</extends>
+ <header>hfctables.h</header>
+ </customwidget>
+ <customwidget>
+ <class>UBMatrixTable</class>
+ <extends>QTableWidget</extends>
+ <header>hfctables.h</header>
+ </customwidget>
+ <customwidget>
+ <class>ProcessTableWidget</class>
+ <extends>QTableWidget</extends>
+ <header>hfctables.h</header>
+ </customwidget>
+ <customwidget>
+ <class>IntegratePeaksTableWidget</class>
+ <extends>QTableWidget</extends>
+ <header>hfctables.h</header>
+ </customwidget>
+ </customwidgets>
+ <resources/>
+ <connections/>
+</ui>
diff --git a/scripts/HFIR_4Circle_Reduction/NTableWidget.py b/scripts/HFIR_4Circle_Reduction/NTableWidget.py
new file mode 100644
index 0000000000000000000000000000000000000000..198725f41ef1492b822dfddb572ecb7c75b0a3aa
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/NTableWidget.py
@@ -0,0 +1,268 @@
+#pylint: disable=C0103,R0904
+# N(DAV)TableWidget
+#
+
+from PyQt4 import QtGui, QtCore
+
+try:
+ _fromUtf8 = QtCore.QString.fromUtf8
+except AttributeError:
+ _fromUtf8 = lambda s: s
+
+
+class NTableWidget(QtGui.QTableWidget):
+ """
+ NdavTableWidget inherits from QTableWidget by extending the features
+ for easy application.
+ """
+ def __init__(self, parent):
+ """
+
+ :param parent:
+ :return:
+ """
+ QtGui.QTableWidget.__init__(self, parent)
+
+ self._myParent = parent
+
+ self._myHeaderList = None
+ self._myColumnTypeList = None
+
+ return
+
+ def append_row(self, row_value_list, type_list=None):
+ """
+
+ :param row_value_list:
+ :return:
+ """
+ # Check input
+ assert isinstance(row_value_list, list)
+ if type_list is not None:
+ assert isinstance(type_list, list)
+ assert len(row_value_list) == len(type_list)
+ else:
+ type_list = self._myColumnTypeList
+ if len(row_value_list) != self.columnCount():
+ ret_msg = 'Input number of values (%d) is different from ' \
+ 'column number (%d).' % (len(row_value_list), self.columnCount())
+ return False, ret_msg
+ else:
+ ret_msg = ''
+
+ # Insert new row
+ row_number = self.rowCount()
+ self.insertRow(row_number)
+
+ # Set values
+ for i_col in xrange(min(len(row_value_list), self.columnCount())):
+ item = QtGui.QTableWidgetItem()
+ item.setText(_fromUtf8(str(row_value_list[i_col])))
+ item.setFlags(item.flags() & ~QtCore.Qt.ItemIsEditable)
+ if type_list[i_col] == 'checkbox':
+ self.set_check_box(row_number, i_col, False)
+ else:
+ self.setItem(row_number, i_col, item)
+ # END-FOR(i_col)
+
+ return True, ret_msg
+
+ def delete_rows(self, row_number_list):
+ """ Delete rows
+ :param row_number_list:
+ :return:
+ """
+ # Check and re-order row numbers
+ assert isinstance(row_number_list, list)
+ row_number_list.sort(reverse=True)
+
+ for row_number in row_number_list:
+ self.removeRow(row_number)
+
+ return
+
+ def get_selected_rows(self):
+ """
+
+ :return: list of row numbers that are selected
+ """
+ rows_list = list()
+ index_status = self._myColumnTypeList.index('checkbox')
+ for i_row in xrange(self.rowCount()):
+ is_checked = self.get_row_value(i_row)[index_status]
+ if is_checked:
+ rows_list.append(i_row)
+
+ return rows_list
+
+ def get_cell_value(self, row_index, col_index):
+ """
+
+ :param row_index:
+ :param col_index:
+ :return:
+ """
+ c_type = self._myColumnTypeList[col_index]
+
+ return_value = None
+ if c_type == 'checkbox':
+ # Check box
+ cell_i_j = self.cellWidget(row_index, col_index)
+ assert isinstance(cell_i_j, QtGui.QCheckBox)
+ return_value = cell_i_j.isChecked()
+ else:
+ # Regular cell
+ item_i_j = self.item(row_index, col_index)
+ assert isinstance(item_i_j, QtGui.QTableWidgetItem)
+ value = str(item_i_j.text())
+ if c_type == 'int':
+ return_value = int(value)
+ elif c_type == 'float':
+ return_value = float(value)
+
+ return return_value
+
+ def get_row_value(self, row_index):
+ """
+ :param row_index:
+ :return: list of objects
+ """
+ if row_index < 0 or row_index >= self.rowCount():
+ raise IndexError('Index of row (%d) is out of range.' % row_index)
+
+ ret_list = list()
+ for i_col in xrange(len(self._myColumnTypeList)):
+ c_type = self._myColumnTypeList[i_col]
+
+ if c_type == 'checkbox':
+ # Check box
+ cell_i_j = self.cellWidget(row_index, i_col)
+ assert isinstance(cell_i_j, QtGui.QCheckBox)
+ is_checked = cell_i_j.isChecked()
+ ret_list.append(is_checked)
+ else:
+ # Regular cell
+ item_i_j = self.item(row_index, i_col)
+ assert isinstance(item_i_j, QtGui.QTableWidgetItem)
+ value = str(item_i_j.text()).strip()
+ if len(value) > 0:
+ if c_type == 'int':
+ value = int(value)
+ elif c_type == 'float':
+ value = float(value)
+ else:
+ value = None
+
+ ret_list.append(value)
+ # END-IF-ELSE
+ # END-FOR
+
+ return ret_list
+
+ def init_setup(self, column_tup_list):
+ """ Initial setup
+ :param column_tup_list: list of 2-tuple as string (column name) and string (data type)
+ :return:
+ """
+ # Define column headings
+ num_cols = len(column_tup_list)
+
+ # Class variables
+ self._myHeaderList = list()
+ self._myColumnTypeList = list()
+
+ for c_tup in column_tup_list:
+ c_name = c_tup[0]
+ c_type = c_tup[1]
+ self._myHeaderList.append(c_name)
+ self._myColumnTypeList.append(c_type)
+
+ self.setColumnCount(num_cols)
+ self.setHorizontalHeaderLabels(self._myHeaderList)
+
+ return
+
+ def init_size(self, num_rows, num_cols):
+ """
+
+ :return:
+ """
+ self.setColumnCount(num_cols)
+ self.setRowCount(num_rows)
+
+ return
+
+ def set_check_box(self, row, col, state):
+ """ function to add a new select checkbox to a cell in a table row
+ won't add a new checkbox if one already exists
+ """
+ # Check input
+ assert isinstance(state, bool)
+
+ # Check if cellWidget exists
+ if self.cellWidget(row,col):
+ # existing: just set the value
+ self.cellWidget(row, col).setChecked(state)
+ else:
+ # case to add checkbox
+ checkbox = QtGui.QCheckBox()
+ checkbox.setText('')
+ checkbox.setChecked(state)
+
+ # Adding a widget which will be inserted into the table cell
+ # then centering the checkbox within this widget which in turn,
+ # centers it within the table column :-)
+ self.setCellWidget(row, col, checkbox)
+ # END-IF-ELSE
+
+ return
+
+ def set_value_cell(self, row, col, value=''):
+ """
+ Set value to a cell with integer, float or string
+ :param row:
+ :param col:
+ :param value:
+ :return:
+ """
+ # Check
+ if row < 0 or row >= self.rowCount() or col < 0 or col >= self.columnCount():
+ raise IndexError('Input row number or column number is out of range.')
+
+ # Init cell
+ cell_item = QtGui.QTableWidgetItem()
+ cell_item.setText(_fromUtf8(str(value)))
+ cell_item.setFlags(cell_item.flags() & ~QtCore.Qt.ItemIsEditable)
+
+ self.setItem(row, col, cell_item)
+
+ return
+
+ def update_cell_value(self, row, col, value):
+ """
+
+ :param row:
+ :param col:
+ :param value:
+ :return:
+ """
+ cell_item = self.item(row, col)
+ cell_widget = self.cellWidget(row, col)
+
+ if cell_item is not None and cell_widget is None:
+ # TableWidgetItem
+ assert isinstance(cell_item, QtGui.QTableWidgetItem)
+ if isinstance(value, float):
+ cell_item.setText(_fromUtf8('%.7f' % value))
+ else:
+ cell_item.setText(_fromUtf8(str(value)))
+ elif cell_item is None and cell_widget is not None:
+ # TableCellWidget
+ if isinstance(cell_item, QtGui.QCheckBox) is True:
+ cell_item.setChecked(value)
+ else:
+ raise TypeError('Cell of type %s is not supported.' % str(type(cell_item)))
+ else:
+ raise TypeError('Table cell (%d, %d) is in an unsupported situation!' % (row, col))
+
+ return
diff --git a/scripts/HFIR_4Circle_Reduction/__init__.py b/scripts/HFIR_4Circle_Reduction/__init__.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/scripts/HFIR_4Circle_Reduction/fourcircle_utility.py b/scripts/HFIR_4Circle_Reduction/fourcircle_utility.py
new file mode 100644
index 0000000000000000000000000000000000000000..35dc1fe387e6bd1597eed0a9eb6c52f8c08811f8
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/fourcircle_utility.py
@@ -0,0 +1,188 @@
+#pylint: disable=W0633,too-many-branches
+__author__ = 'wzz'
+
+import os
+import urllib2
+import socket
+
+
+def check_url(url, read_lines=False):
+ """ Check whether a URL is valid
+ :param url:
+ :return: boolean, error message
+ """
+ lines = None
+ try:
+ # Access URL
+ url_stream = urllib2.urlopen(url, timeout=2)
+
+ # Read lines
+ if read_lines is True:
+ lines = url_stream.readlines()
+ except urllib2.URLError as url_error:
+ url_stream = url_error
+ except socket.timeout:
+ return False, 'Time out. Try again!'
+
+ # Return result
+ if url_stream.code in (200, 401):
+ url_good = True
+ else:
+ url_good = False
+
+ # Close connect
+ url_stream.close()
+
+ # Return
+ if read_lines is True:
+ return url_good, lines
+ if url_good is False:
+ error_message = 'Unable to access %s. Check internet access. Code %d' % (url, url_stream.code)
+ else:
+ error_message = ''
+
+ return url_good, error_message
+
+
+def get_scans_list(server_url, exp_no, return_list=False):
+ """ Get list of scans under one experiment
+ :param server_url:
+ :param exp_no:
+ :return: message
+ """
+ if server_url.endswith('/') is False:
+ server_url = '%s/' % server_url
+ data_dir_url = '%sexp%d/Datafiles' % (server_url, exp_no)
+
+ does_exist, raw_lines = check_url(data_dir_url, read_lines=True)
+ if does_exist is False:
+ return "Experiment %d's URL %s cannot be found." % (exp_no, data_dir_url)
+
+ # Scan through the index page
+ scan_list = []
+ header = 'HB3A_exp%04d_scan' % exp_no
+ for line in raw_lines:
+ if line.count(header) > 0:
+ # try to find file HB3A_exp0123_scan6789.dat
+ term = line.split(header)[1].split('.dat')[0]
+ scan = int(term)
+ # check
+ if '%04d' % scan == term:
+ scan_list.append(scan)
+ # END_FOR
+ scan_list = sorted(scan_list)
+ if return_list is True:
+ return scan_list
+
+ message = 'Experiment %d: Scan from %d to %d' % (exp_no, scan_list[0], scan_list[-1])
+
+ return message
+
+
+def get_scans_list_local_disk(local_dir, exp_no):
+ """ Get scans from a specified directory on local disk
+ :param local_dir:
+ :param exp_no:
+ :return:
+ """
+ scan_list = []
+
+ file_names = os.listdir(local_dir)
+ header = 'HB3A_exp%04d_scan' % exp_no
+ for name in file_names:
+ if name.count(header) > 0:
+ scan = int(name.split(header)[1].split('.dat')[0])
+ scan_list.append(scan)
+
+ scan_list = sorted(scan_list)
+
+ if len(scan_list) == 0:
+ message = 'Experiment %d: No scan can be found.' % exp_no
+ else:
+ message = 'Experiment %d: Scan from %d to %d ' % (exp_no, scan_list[0], scan_list[-1])
+ num_skip_scans = scan_list[-1] - scan_list[0] + 1 - len(scan_list)
+ if num_skip_scans > 0:
+ message += 'with %d ' % num_skip_scans
+ else:
+ message += 'without '
+ message += 'missing scans.'
+
+ return message
+
+
+def parse_int_array(int_array_str):
+ """ Validate whether the string can be divided into integer strings.
+ Allowed: a, b, c-d, e, f
+ :param int_array_str:
+ :return:
+ """
+ int_array_str = str(int_array_str)
+ if int_array_str == "":
+ return True, []
+
+ # Split by ","
+ term_level_0 = int_array_str.split(",")
+ integer_list = []
+
+ # For each term
+ err_msg = ""
+ ret_status = True
+
+ for level0_term in term_level_0:
+ level0_term = level0_term.strip()
+
+ # split upon dash -
+ num_dashes = level0_term.count("-")
+ if num_dashes == 0:
+ # one integer
+ value_str = level0_term
+ try:
+ int_value = int(value_str)
+ if str(int_value) != value_str:
+ ret_status = False
+ err_msg = "Contains non-integer string %s." % value_str
+ except ValueError:
+ ret_status = False
+ err_msg = "String %s is not an integer." % (value_str)
+ else:
+ integer_list.append(int_value)
+
+ elif num_dashes == 1:
+ # Integer range
+ two_terms = level0_term.split("-")
+ temp_list = []
+ for i in xrange(2):
+ value_str = two_terms[i]
+ try:
+ int_value = int(value_str)
+ if str(int_value) != value_str:
+ ret_status = False
+ err_msg = "Contains non-integer string %s." % (value_str)
+ except ValueError:
+ ret_status = False
+ err_msg = "String %s is not an integer." % (value_str)
+ else:
+ temp_list.append(int_value)
+
+ # break loop
+ if ret_status is False:
+ break
+ # END_FOR(i)
+ integer_list.extend(range(temp_list[0], temp_list[1]+1))
+
+ else:
+ # Undefined situation
+ ret_status = False
+ err_msg = "Term %s contains more than 1 dash." % level0_term
+ # END-IF-ELSE
+
+ # break loop if something is wrong
+ if ret_status is False:
+ break
+ # END-FOR(level0_term)
+
+ # Return with false
+ if ret_status is False:
+ return False, err_msg
+
+ return True, integer_list
diff --git a/scripts/HFIR_4Circle_Reduction/guiutility.py b/scripts/HFIR_4Circle_Reduction/guiutility.py
new file mode 100644
index 0000000000000000000000000000000000000000..79237a5729470b372017478b24a0564159d67fb1
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/guiutility.py
@@ -0,0 +1,164 @@
+#
+# GUI Utility Methods
+#
+from PyQt4 import QtGui
+
+
+def parse_float_array(array_str):
+ """ Parse a string to an array of float
+ :param array_str:
+ :return: boolean, list of floats/error message
+ """
+ print array_str
+ assert isinstance(array_str, str)
+ array_str = array_str.replace(',', ' ')
+ array_str = array_str.replace('\n', ' ')
+ array_str = array_str.replace('\t ', ' ')
+ array_str = array_str.strip()
+ print '[DB] After processing: ', array_str
+
+ float_str_list = array_str.split()
+ float_list = list()
+ for float_str in float_str_list:
+ try:
+ value = float(float_str)
+ except ValueError as value_error:
+ return False, 'Unable to parse %s due to %s.' % (float_str, str(value_error))
+ else:
+ float_list.append(value)
+ # END-FOR
+
+ return True, float_list
+
+
+def parse_integer_list(array_str):
+ """ Parse a string to an array of integer separated by ','
+ also, the format as 'a-b' is supported too
+ :param array_str:
+ :return: boolean, list of floats/error message
+ """
+ assert isinstance(array_str, str)
+ array_str = array_str.replace(' ', '')
+ array_str = array_str.replace('\n', '')
+ array_str = array_str.replace('\t ', '')
+
+ int_str_list = array_str.split(',')
+ integer_list = list()
+ for int_str in int_str_list:
+
+ try:
+ int_value = int(int_str)
+ integer_list.append(int_value)
+ except ValueError:
+ num_dash = int_str.count('-')
+ if num_dash == 1:
+ terms = int_str.split('-')
+ try:
+ start_value = int(terms[0])
+ end_value = int(terms[1])
+ except ValueError:
+ raise RuntimeError('Unable to parse %s due to value error' % int_str)
+ elif num_dash == 2 and int_str.startswith('-'):
+ terms = int_str[1:].split('-')
+ try:
+ start_value = int(terms[0])*-1
+ end_value = int(terms[1])
+ except ValueError:
+ raise RuntimeError('Unable to parse %s due to value error' % int_str)
+ elif num_dash == 3:
+ terms = int_str.split('-')
+ try:
+ start_value = -1*int(terms[1])
+ end_value = -1*int(terms[3])
+ except ValueError:
+ raise RuntimeError('Unable to parse %s due to value error' % int_str)
+ except IndexError:
+ raise RuntimeError('Unable to parse %s due to value error' % int_str)
+ else:
+ raise RuntimeError('Unable to parse %s due to value error' % int_str)
+
+ integer_list.extend(xrange(start_value, end_value+1))
+ # END-FOR
+
+ return integer_list
+
+
+def parse_float_editors(line_edits):
+ """
+ :param line_edits:
+ :return: (True, list of floats); (False, error message)
+ """
+ # Set flag
+ return_single_value = False
+
+ if isinstance(line_edits, QtGui.QLineEdit) is True:
+ line_edit_list = [line_edits]
+ return_single_value = True
+ elif isinstance(line_edits, list) is True:
+ line_edit_list = line_edits
+ else:
+ raise RuntimeError('Input is not LineEdit or list of LineEdit.')
+
+ error_message = ''
+ float_list = []
+
+ for line_edit in line_edit_list:
+ assert isinstance(line_edit, QtGui.QLineEdit)
+ try:
+ str_value = str(line_edit.text()).strip()
+ float_value = float(str_value)
+ except ValueError as value_err:
+ error_message += 'Unable to parse to integer. %s\n' % (str(value_err))
+ else:
+ float_list.append(float_value)
+ # END-TRY
+ # END-FOR
+
+ if len(error_message) > 0:
+ return False, error_message
+ elif return_single_value is True:
+ return True, float_list[0]
+
+ return True, float_list
+
+
+def parse_integers_editors(line_edits):
+ """
+ :param line_edits:
+ :return: (True, list of integers); (False, error message)
+ """
+ # Set flag
+ return_single_value = False
+
+ if isinstance(line_edits, QtGui.QLineEdit) is True:
+ line_edit_list = [line_edits]
+ return_single_value = True
+ elif isinstance(line_edits, list) is True:
+ line_edit_list = line_edits
+ else:
+ raise RuntimeError('Input is not LineEdit or list of LineEdit.')
+
+ error_message = ''
+ integer_list = []
+
+ for line_edit in line_edit_list:
+ assert isinstance(line_edit, QtGui.QLineEdit)
+ try:
+ str_value = str(line_edit.text()).strip()
+ int_value = int(str_value)
+ except ValueError as value_err:
+ error_message += 'Unable to parse to integer. %s\n' % (str(value_err))
+ else:
+ if str_value != '%d' % int_value:
+ error_message += 'Value %s is not a proper integer.\n' % str_value
+ else:
+ integer_list.append(int_value)
+ # END-TRY
+ # END-FOR
+
+ if len(error_message) > 0:
+ return False, error_message
+ elif return_single_value is True:
+ return True, integer_list[0]
+
+ return True, integer_list
diff --git a/scripts/HFIR_4Circle_Reduction/hfctables.py b/scripts/HFIR_4Circle_Reduction/hfctables.py
new file mode 100644
index 0000000000000000000000000000000000000000..dba8cb64a3aefb4adff82b540655251d9fe41311
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/hfctables.py
@@ -0,0 +1,385 @@
+#pylint: disable=W0403,C0103,R0901,R0904
+import numpy
+import NTableWidget as tableBase
+
+# UB peak information table
+Peak_Integration_Table_Setup = [('Scan', 'int'),
+ ('Pt', 'int'),
+ ('H', 'float'),
+ ('K', 'float'),
+ ('L', 'float'),
+ ('Q_x', 'float'),
+ ('Q_y', 'float'),
+ ('Q_z', 'float'),
+ ('Intensity', 'float')]
+
+
+class IntegratePeaksTableWidget(tableBase.NTableWidget):
+ """
+ Extended table widget for peak integration
+ """
+ def __init__(self, parent):
+ """
+ :param parent:
+ """
+ tableBase.NTableWidget.__init__(self, parent)
+
+ return
+
+ def setup(self):
+ """
+ Init setup
+ :return:
+ """
+ self.init_setup(Peak_Integration_Table_Setup)
+
+ return
+
+
+class UBMatrixTable(tableBase.NTableWidget):
+ """
+ Extended table for UB matrix
+ """
+ def __init__(self, parent):
+ """
+
+ :param parent:
+ :return:
+ """
+ tableBase.NTableWidget.__init__(self, parent)
+
+ # Matrix
+ self._matrix = numpy.ndarray((3, 3), float)
+ for i in xrange(3):
+ for j in xrange(3):
+ self._matrix[i][j] = 0.
+
+ return
+
+ def _set_to_table(self):
+ """
+ Set values in holder '_matrix' to TableWidget
+ :return:
+ """
+ for i_row in xrange(3):
+ for j_col in xrange(3):
+ self.update_cell_value(i_row, j_col, self._matrix[i_row][j_col])
+
+ return
+
+ def get_matrix(self):
+ """
+ Get the copy of the matrix
+ :return:
+ """
+ # print '[DB] MatrixTable: _Matrix = ', self._matrix
+ return self._matrix.copy()
+
+ def set_from_list(self, element_array):
+ """
+ Set table value including holder and QTable from a 1D numpy array
+ :param element_array:
+ :return:
+ """
+ # Check
+ assert isinstance(element_array, list)
+ assert len(element_array) == 9
+
+ # Set value
+ i_array = 0
+ for i in xrange(3):
+ for j in xrange(3):
+ self._matrix[i][j] = element_array[i_array]
+ i_array += 1
+
+ # Set to table
+ self._set_to_table()
+
+ return
+
+ def set_from_matrix(self, matrix):
+ """
+ Set value to both holder and QTable from a numpy 3 x 3 matrix
+ :param matrix:
+ :return:
+ """
+ # Check
+ assert isinstance(matrix, numpy.ndarray)
+ assert matrix.shape == (3, 3)
+
+ for i in xrange(3):
+ for j in xrange(3):
+ self._matrix[i][j] = matrix[i][j]
+
+ self._set_to_table()
+
+ return
+
+ def setup(self):
+ """
+ Init setup
+ :return:
+ """
+ # self.init_size(3, 3)
+
+ for i in xrange(3):
+ for j in xrange(3):
+ self.set_value_cell(i, j)
+
+ self._set_to_table()
+
+ return
+
+
+# UB peak information table
+UB_Peak_Table_Setup = [('Scan', 'int'),
+ ('Pt', 'int'),
+ ('H', 'float'),
+ ('K', 'float'),
+ ('L', 'float'),
+ ('Q_x', 'float'),
+ ('Q_y', 'float'),
+ ('Q_z', 'float'),
+ ('Selected', 'checkbox'),
+ ('m1', 'float'),
+ ('Error', 'float')]
+
+
+class UBMatrixPeakTable(tableBase.NTableWidget):
+ """
+ Extended table for peaks used to calculate UB matrix
+ """
+ def __init__(self, parent):
+ """
+
+ :param parent:
+ :return:
+ """
+ tableBase.NTableWidget.__init__(self, parent)
+
+ return
+
+ def get_exp_info(self, row_index):
+ """
+ Get experiment information from a row
+ :return: scan number, pt number
+ """
+ assert isinstance(row_index, int)
+
+ scan_number = self.get_cell_value(row_index, 0)
+ assert isinstance(scan_number, int)
+ pt_number = self.get_cell_value(row_index, 1)
+ assert isinstance(pt_number, int)
+
+ return scan_number, pt_number
+
+ def get_hkl(self, row_index):
+ """
+ Get reflection's miller index
+ :param row_index:
+ :return:
+ """
+ assert isinstance(row_index, int)
+
+ m_h = self.get_cell_value(row_index, 2)
+ m_k = self.get_cell_value(row_index, 3)
+ m_l = self.get_cell_value(row_index, 4)
+
+ assert isinstance(m_h, float)
+ assert isinstance(m_k, float)
+ assert isinstance(m_l, float)
+
+ return m_h, m_k, m_l
+
+ def get_scan_pt(self, row_number):
+ """
+ Get Scan and Pt from a row
+ :param row_number:
+ :return:
+ """
+ scan_number = self.get_cell_value(row_number, 0)
+ pt_number = self.get_cell_value(row_number, 1)
+
+ return scan_number, pt_number
+
+ def is_selected(self, row_index):
+ """
+
+ :return:
+ """
+ if row_index < 0 or row_index >= self.rowCount():
+ raise IndexError('Input row number %d is out of range [0, %d)' % (row_index, self.rowCount()))
+
+ col_index = UB_Peak_Table_Setup.index(('Selected', 'checkbox'))
+
+ return self.get_cell_value(row_index, col_index)
+
+ def setup(self):
+ """
+ Init setup
+ :return:
+ """
+ self.init_setup(UB_Peak_Table_Setup)
+
+ return
+
+ def set_hkl(self, i_row, hkl, error=None):
+ """
+ Set HKL to table
+ :param irow:
+ :param hkl:
+ """
+ # Check
+ assert isinstance(i_row, int)
+ assert isinstance(hkl, list)
+
+ i_col_h = UB_Peak_Table_Setup.index(('H', 'float'))
+ i_col_k = UB_Peak_Table_Setup.index(('K', 'float'))
+ i_col_l = UB_Peak_Table_Setup.index(('L', 'float'))
+
+ self.update_cell_value(i_row, i_col_h, hkl[0])
+ self.update_cell_value(i_row, i_col_k, hkl[1])
+ self.update_cell_value(i_row, i_col_l, hkl[2])
+
+ if error is not None:
+ i_col_error = UB_Peak_Table_Setup.index(('Error', 'float'))
+ self.update_cell_value(i_row, i_col_error, error)
+
+ return
+
+ def update_hkl(self, i_row, h, k, l):
+ """ Update HKL value
+ """
+ self.update_cell_value(i_row, 2, h)
+ self.update_cell_value(i_row, 3, k)
+ self.update_cell_value(i_row, 4, l)
+
+ return
+
+
+# Processing status table
+Process_Table_Setup = [('Scan', 'int'),
+ ('Number Pt', 'int'),
+ ('Status', 'str'),
+ ('Merged Workspace', 'str'),
+ ('Group Name', 'str'),
+ ('Select', 'checkbox')]
+
+
+class ProcessTableWidget(tableBase.NTableWidget):
+ """
+ Extended table for peaks used to calculate UB matrix
+ """
+ def __init__(self, parent):
+ """
+
+ :param parent:
+ :return:
+ """
+ tableBase.NTableWidget.__init__(self, parent)
+
+ return
+
+ def append_scans(self, scans):
+ """ Append rows
+ :param scans:
+ :return:
+ """
+ # Check
+ assert isinstance(scans, list)
+
+ # Append rows
+ for scan in scans:
+ row_value_list = [scan, 0, 'In Queue', '', '', False]
+ status, err = self.append_row(row_value_list)
+ if status is False:
+ raise RuntimeError(err)
+
+ return
+
+ def setup(self):
+ """
+ Init setup
+ :return:
+ """
+ self.init_setup(Process_Table_Setup)
+
+ return
+
+ def set_scan_pt(self, scan_no, pt_list):
+ """
+ :param scan_no:
+ :param pt_list:
+ :return:
+ """
+ # Check
+ assert isinstance(scan_no, int)
+
+ num_rows = self.rowCount()
+ set_done = False
+ for i_row in xrange(num_rows):
+ tmp_scan_no = self.get_cell_value(i_row, 0)
+ if scan_no == tmp_scan_no:
+ self.update_cell_value(i_row, 1, len(pt_list))
+ set_done = True
+ break
+ # END-FOR
+
+ if set_done is False:
+ return 'Unable to find scan %d in table.' % scan_no
+
+ return ''
+
+ def set_status(self, scan_no, status):
+ """
+ Set the status for merging scan to QTable
+ :param status:
+ :return:
+ """
+ # Check
+ assert isinstance(scan_no, int)
+
+ num_rows = self.rowCount()
+ set_done = False
+ for i_row in xrange(num_rows):
+ tmp_scan_no = self.get_cell_value(i_row, 0)
+ if scan_no == tmp_scan_no:
+ self.update_cell_value(i_row, 2, status)
+ set_done = True
+ break
+ # END-FOR
+
+ if set_done is False:
+ return 'Unable to find scan %d in table.' % scan_no
+
+ return ''
+
+ def set_ws_names(self, scan_num, merged_md_name, ws_group_name):
+ """
+ Set the output workspace and workspace group's names to QTable
+ :param merged_md_name:
+ :param ws_group_name:
+ :return:
+ """
+ # Check
+ assert isinstance(scan_num, int)
+ assert isinstance(merged_md_name, str) or merged_md_name is None
+ assert isinstance(ws_group_name, str) or ws_group_name is None
+
+ num_rows = self.rowCount()
+ set_done = False
+ for i_row in xrange(num_rows):
+ tmp_scan_no = self.get_cell_value(i_row, 0)
+ if scan_num == tmp_scan_no:
+ if merged_md_name is not None:
+ self.update_cell_value(i_row, 3, merged_md_name)
+ if ws_group_name is not None:
+ self.update_cell_value(i_row, 4, ws_group_name)
+ set_done = True
+ break
+ # END-FOR
+
+ if set_done is False:
+ return 'Unable to find scan %d in table.' % scan_num
+
+ return
diff --git a/scripts/HFIR_4Circle_Reduction/mplgraphicsview.py b/scripts/HFIR_4Circle_Reduction/mplgraphicsview.py
new file mode 100644
index 0000000000000000000000000000000000000000..152ffc29c4775c6f98b8b67befe0554a36d66032
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/mplgraphicsview.py
@@ -0,0 +1,1255 @@
+#pylint: disable=invalid-name,too-many-public-methods,too-many-arguments,non-parent-init-called,R0902,too-many-branches,C0302
+import os
+import numpy as np
+
+from PyQt4 import QtGui
+
+from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
+from matplotlib.backends.backend_qt4agg import NavigationToolbar2QTAgg as NavigationToolbar2
+from matplotlib.figure import Figure
+import matplotlib.image
+
+MplLineStyles = ['-' , '--' , '-.' , ':' , 'None' , ' ' , '']
+MplLineMarkers = [
+ ". (point )",
+ "* (star )",
+ "x (x )",
+ "o (circle )",
+ "s (square )",
+ "D (diamond )",
+ ", (pixel )",
+ "v (triangle_down )",
+ "^ (triangle_up )",
+ "< (triangle_left )",
+ "> (triangle_right)",
+ "1 (tri_down )",
+ "2 (tri_up )",
+ "3 (tri_left )",
+ "4 (tri_right )",
+ "8 (octagon )",
+ "p (pentagon )",
+ "h (hexagon1 )",
+ "H (hexagon2 )",
+ "+ (plus )",
+ "d (thin_diamond )",
+ "| (vline )",
+ "_ (hline )",
+ "None (nothing )"]
+
+# Note: in colors, "white" is removed
+MplBasicColors = [
+ "black",
+ "red",
+ "blue",
+ "green",
+ "cyan",
+ "magenta",
+ "yellow"]
+
+
+class IndicatorManager(object):
+ """ Manager for all indicator lines
+ """
+ def __init__(self):
+ """
+
+ :return:
+ """
+ # Auto color index
+ self._colorIndex = 0
+ # Auto line ID
+ self._autoLineID = 1
+
+ self._lineManager = dict()
+ self._canvasLineKeyDict = dict()
+ self._indicatorTypeDict = dict() # value: 0 (horizontal), 1 (vertical), 2 (2-way)
+
+ return
+
+ def add_2way_indicator(self, x, x_min, x_max, y, y_min, y_max, color):
+ """
+
+ :param x:
+ :param x_min:
+ :param x_max:
+ :param y:
+ :param y_min:
+ :param y_max:
+ :param color:
+ :return:
+ """
+ # Set up indicator ID
+ this_id = str(self._autoLineID)
+ self._autoLineID += 1
+
+ # Set up vectors
+ vec_x_horizontal = np.array([x_min, x_max])
+ vec_y_horizontal = np.array([y, y])
+
+ vec_x_vertical = np.array([x, x])
+ vec_y_vertical = np.array([y_min, y_max])
+
+ #
+ self._lineManager[this_id] = [vec_x_horizontal, vec_y_horizontal, vec_x_vertical, vec_y_vertical, color]
+ self._indicatorTypeDict[this_id] = 2
+
+ return this_id
+
+ def add_horizontal_indicator(self, y, x_min, x_max, color):
+ """
+ Add a horizontal indicator
+ :param y:
+ :param x_min:
+ :param x_max:
+ :param color:
+ :return:
+ """
+ # Get ID
+ this_id = str(self._autoLineID)
+ self._autoLineID += 1
+
+ #
+ vec_x = np.array([x_min, x_max])
+ vec_y = np.array([y, y])
+
+ #
+ self._lineManager[this_id] = [vec_x, vec_y, color]
+ self._indicatorTypeDict[this_id] = 0
+
+ return this_id
+
+ def add_vertical_indicator(self, x, y_min, y_max, color):
+ """
+ Add a vertical indicator to data structure
+ :return: indicator ID
+ """
+ # Get ID
+ this_id = str(self._autoLineID)
+ self._autoLineID += 1
+
+ #
+ vec_x = np.array([x, x])
+ vec_y = np.array([y_min, y_max])
+
+ #
+ self._lineManager[this_id] = [vec_x, vec_y, color]
+ self._indicatorTypeDict[this_id] = 1
+
+ return this_id
+
+ def get_canvas_line_index(self, my_id):
+ """
+
+ :param my_id:
+ :return:
+ """
+ assert isinstance(my_id, str)
+
+ if my_id not in self._canvasLineKeyDict:
+ raise RuntimeError('Indicator ID %s cannot be found. Current keys are %s.' % (
+ my_id, str(sorted(self._canvasLineKeyDict.keys()))
+ ))
+ return self._canvasLineKeyDict[my_id]
+
+ def get_line_type(self, my_id):
+ """
+
+ :param my_id:
+ :return:
+ """
+ return self._indicatorTypeDict[my_id]
+
+ def get_2way_data(self, line_id):
+ """
+
+ :param line_id:
+ :return:
+ """
+ assert self._indicatorTypeDict.has_key(line_id)
+ assert self._indicatorTypeDict[line_id] == 2
+
+ vec_set = [self._lineManager[line_id][0:2], self._lineManager[line_id][2:4]]
+
+ return vec_set
+
+ def get_data(self, line_id):
+ """
+ Get line's vector x and vector y
+ :param line_id:
+ :return:
+ """
+ return self._lineManager[line_id][0], self._lineManager[line_id][1]
+
+ def get_line_style(self, line_id=None):
+ """
+
+ :param line_id:
+ :return:
+ """
+ assert isinstance(line_id, None)
+ return '--'
+
+ def get_live_indicator_ids(self):
+ """
+
+ :return:
+ """
+ return sorted(self._lineManager.keys())
+
+ def get_marker(self):
+ """
+ Get the marker a line
+ :param line_id:
+ :return:
+ """
+ return 'o'
+
+ def get_next_color(self):
+ """
+ Get next color by auto color index
+ :return: string as color
+ """
+ next_color = MplBasicColors[self._colorIndex]
+
+ # Advance and possibly reset color scheme
+ self._colorIndex += 1
+ if self._colorIndex == len(MplBasicColors):
+ self._colorIndex = 0
+
+ return next_color
+
+ def set_canvas_line_index(self, my_id, canvas_line_index):
+ """
+
+ :param my_id:
+ :param canvas_line_index:
+ :return:
+ """
+ self._canvasLineKeyDict[my_id] = canvas_line_index
+
+ def shift(self, my_id, dx, dy):
+ """
+
+ :param my_id:
+ :param dx:
+ :param dy:
+ :return:
+ """
+ print self._lineManager[my_id][0]
+
+ if self._indicatorTypeDict[my_id] == 0:
+ # horizontal
+ self._lineManager[my_id][1] += dy
+
+ elif self._indicatorTypeDict[my_id] == 1:
+ # vertical
+ self._lineManager[my_id][0] += dx
+
+ elif self._indicatorTypeDict[my_id] == 2:
+ # 2-way
+ self._lineManager[my_id][2] += dx
+ self._lineManager[my_id][1] += dy
+
+ else:
+ raise RuntimeError('Unsupported indicator of type %d' % self._indicatorTypeDict[my_id])
+
+ return
+
+ def update_indicators_range(self, x_range, y_range):
+ """
+ Update indicator's range
+ :param x_range:
+ :param y_range:
+ :return:
+ """
+ for i_id in self._lineManager.keys():
+ # NEXT - Need a new flag for direction of the indicating line, vertical or horizontal
+ if True:
+ self._lineManager[i_id][1][0] = y_range[0]
+ self._lineManager[i_id][1][-1] = y_range[1]
+ else:
+ self._lineManager[i_id][0][0] = x_range[0]
+ self._lineManager[i_id][0][-1] = x_range[1]
+
+ return
+
+
+class MplGraphicsView(QtGui.QWidget):
+ """ A combined graphics view including matplotlib canvas and
+ a navigation tool bar
+
+ Note: Merged with HFIR_Powder_Reduction.MplFigureCAnvas
+ """
+ def __init__(self, parent):
+ """ Initialization
+ """
+ # Initialize parent
+ QtGui.QWidget.__init__(self, parent)
+
+ # set up canvas
+ self._myCanvas = Qt4MplCanvas(self)
+ self._myToolBar = MyNavigationToolbar(self, self._myCanvas)
+
+ # set up layout
+ self._vBox = QtGui.QVBoxLayout(self)
+ self._vBox.addWidget(self._myCanvas)
+ self._vBox.addWidget(self._myToolBar)
+
+ # auto line's maker+color list
+ self._myLineMarkerColorList = []
+ self._myLineMarkerColorIndex = 0
+ self.setAutoLineMarkerColorCombo()
+
+ # Declaration of class variables
+ self._indicatorKey = None
+
+ # Indicator manager
+ self._myIndicatorsManager = IndicatorManager()
+
+ return
+
+ def add_line_set(self, vec_set, color, marker, line_style, line_width):
+ """ Add a set of line and manage together
+ :param vec_set:
+ :param color:
+ :param marker:
+ :param line_style:
+ :param line_width:
+ :return:
+ """
+ key_list = list()
+ for vec_x, vec_y in vec_set:
+ temp_key = self._myCanvas.add_plot_1d(vec_x, vec_y, color=color, marker=marker,
+ line_style=line_style, line_width=line_width)
+ assert isinstance(temp_key, int)
+ assert temp_key >= 0
+ key_list.append(temp_key)
+
+ return key_list
+
+ def add_plot_1d(self, vec_x, vec_y, y_err=None, color=None, label="", x_label=None, y_label=None,
+ marker=None, line_style=None, line_width=1):
+ """ Add a new plot
+ """
+ line_key = self._myCanvas.add_plot_1d(vec_x, vec_y, y_err, color, label, x_label, y_label, marker, line_style,
+ line_width)
+
+ return line_key
+
+ def add_plot_1d_right(self, vec_x, vec_y, color=None, label='', marker=None, line_style=None, line_width=1):
+ """
+ Add 1 line (1-d plot) to right axis
+ :param vec_x:
+ :param vec_y:
+ :param color:
+ :param label:
+ :param marker:
+ :param line_style:
+ :param line_width:
+ :return:
+ """
+ line_key = self._myCanvas.add_1d_plot_right(vec_x, vec_y, label=label,
+ color=color, marker=marker,
+ linestyle=line_style, linewidth=line_width)
+
+ return line_key
+
+ def add_2way_indicator(self, x=None, y=None, color=None, master_line=None):
+ """ Add a 2-way indicator following an existing line?
+ :param x:
+ :param y:
+ :param color:
+ :return:
+ """
+ if master_line is not None:
+ raise RuntimeError('Implement how to use master_line ASAP.')
+
+ x_min, x_max = self._myCanvas.getXLimit()
+ if x is None:
+ x = (x_min + x_max) * 0.5
+ else:
+ assert isinstance(x, float)
+
+ y_min, y_max = self._myCanvas.getYLimit()
+ if y is None:
+ y = (y_min + y_max) * 0.5
+ else:
+ assert isinstance(y, float)
+
+ if color is None:
+ color = self._myIndicatorsManager.get_next_color()
+ else:
+ assert isinstance(color, str)
+
+ my_id = self._myIndicatorsManager.add_2way_indicator(x, x_min, x_max,
+ y, y_min, y_max,
+ color)
+ vec_set = self._myIndicatorsManager.get_2way_data(my_id)
+
+ canvas_line_index = self.add_line_set(vec_set, color=color,
+ marker=self._myIndicatorsManager.get_marker(),
+ line_style=self._myIndicatorsManager.get_line_style(),
+ line_width=1)
+ self._myIndicatorsManager.set_canvas_line_index(my_id, canvas_line_index)
+
+ return my_id
+
+ def add_horizontal_indicator(self, y=None, color=None):
+ """ Add an indicator line
+ """
+ # Default
+ if y is None:
+ y_min, y_max = self._myCanvas.getYLimit()
+ y = (y_min + y_max) * 0.5
+ else:
+ assert isinstance(y, float)
+
+ x_min, x_max = self._myCanvas.getXLimit()
+
+ # For color
+ if color is None:
+ color = self._myIndicatorsManager.get_next_color()
+ else:
+ assert isinstance(color, str)
+
+ # Form
+ my_id = self._myIndicatorsManager.add_horizontal_indicator(y, x_min, x_max, color)
+ vec_x, vec_y = self._myIndicatorsManager.get_data(my_id)
+
+ canvas_line_index = self._myCanvas.add_plot_1d(vec_x=vec_x, vec_y=vec_y,
+ color=color, marker=self._myIndicatorsManager.get_marker(),
+ line_style=self._myIndicatorsManager.get_line_style(),
+ line_width=1)
+
+ self._myIndicatorsManager.set_canvas_line_index(my_id, canvas_line_index)
+
+ return my_id
+
+ def add_vertical_indicator(self, x=None, color=None):
+ """
+ Add a vertical indicator line
+ :param x: None as the automatic mode using default from middle of canvas
+ :param color: None as the automatic mode using default
+ :return: indicator ID
+ """
+ # For indicator line's position
+ if x is None:
+ x_min, x_max = self._myCanvas.getXLimit()
+ x = (x_min + x_max) * 0.5
+ else:
+ assert isinstance(x, float)
+
+ y_min, y_max = self._myCanvas.getYLimit()
+
+ # For color
+ if color is None:
+ color = self._myIndicatorsManager.get_next_color()
+ else:
+ assert isinstance(color, str)
+
+ # Form
+ my_id = self._myIndicatorsManager.add_vertical_indicator(x, y_min, y_max, color)
+ vec_x, vec_y = self._myIndicatorsManager.get_data(my_id)
+
+ canvas_line_index = self._myCanvas.add_plot_1d(vec_x=vec_x, vec_y=vec_y,
+ color=color, marker=self._myIndicatorsManager.get_marker(),
+ line_style=self._myIndicatorsManager.get_line_style(),
+ line_width=1)
+
+ self._myIndicatorsManager.set_canvas_line_index(my_id, canvas_line_index)
+
+ return my_id
+
+ def add_plot_2d(self, array2d, x_min, x_max, y_min, y_max, hold_prev_image=True, y_tick_label=None):
+ """
+ Add a 2D image to canvas
+ :param array2d: numpy 2D array
+ :param x_min:
+ :param x_max:
+ :param y_min:
+ :param y_max:
+ :param hold_prev_image:
+ :param y_tick_label:
+ :return:
+ """
+ self._myCanvas.addPlot2D(array2d, x_min, x_max, y_min, y_max, hold_prev_image, y_tick_label)
+
+ return
+
+
+ def addImage(self, imagefilename):
+ """ Add an image by file
+ """
+ # check
+ if os.path.exists(imagefilename) is False:
+ raise NotImplementedError("Image file %s does not exist." % (imagefilename))
+
+ self._myCanvas.addImage(imagefilename)
+
+ return
+
+ def clear_all_lines(self):
+ """
+ """
+ self._myCanvas.clear_all_1d_plots()
+
+ def clear_canvas(self):
+ """ Clear canvas
+ """
+ return self._myCanvas.clear_canvas()
+
+ def draw(self):
+ """ Draw to commit the change
+ """
+ return self._myCanvas.draw()
+
+ def evt_view_updated(self):
+ """ Event handling as canvas size updated
+ :return:
+ """
+ # update the indicator
+ new_x_range = self.getXLimit()
+ new_y_range = self.getYLimit()
+
+ self._myIndicatorsManager.update_indicators_range(new_x_range, new_y_range)
+ for indicator_key in self._myIndicatorsManager.get_live_indicator_ids():
+ canvas_line_id = self._myIndicatorsManager.get_canvas_line_index(indicator_key)
+ data_x, data_y = self._myIndicatorsManager.get_data(indicator_key)
+ self.updateLine(canvas_line_id, data_x, data_y)
+ # END-FOR
+
+ return
+
+ def getPlot(self):
+ """
+ """
+ return self._myCanvas.getPlot()
+
+ def getLastPlotIndexKey(self):
+ """ Get ...
+ """
+ return self._myCanvas.getLastPlotIndexKey()
+
+ def getXLimit(self):
+ """ Get limit of Y-axis
+ """
+ return self._myCanvas.getXLimit()
+
+ def getYLimit(self):
+ """ Get limit of Y-axis
+ """
+ return self._myCanvas.getYLimit()
+
+ def move_indicator(self, line_id, dx, dy):
+ """
+ Move the indicator line in horizontal
+ :param line_id:
+ :param dx:
+ :return:
+ """
+ # Shift value
+ self._myIndicatorsManager.shift(line_id, dx=dx, dy=dy)
+
+ # apply to plot on canvas
+ if self._myIndicatorsManager.get_line_type(line_id) < 2:
+ # horizontal or vertical
+ canvas_line_index = self._myIndicatorsManager.get_canvas_line_index(line_id)
+ vec_x, vec_y = self._myIndicatorsManager.get_data(line_id)
+ self._myCanvas.updateLine(ikey=canvas_line_index, vecx=vec_x, vecy=vec_y)
+ else:
+ # 2-way
+ canvas_line_index_h, canvas_line_index_v = self._myIndicatorsManager.get_canvas_line_index(line_id)
+ h_vec_set, v_vec_set = self._myIndicatorsManager.get_2way_data(line_id)
+
+ self._myCanvas.updateLine(ikey=canvas_line_index_h, vecx=h_vec_set[0], vecy=h_vec_set[1])
+ self._myCanvas.updateLine(ikey=canvas_line_index_v, vecx=v_vec_set[0], vecy=v_vec_set[1])
+
+ return
+
+ def remove_indicator(self, indicator_key):
+ """ Remove indicator line
+ :param indicator_key:
+ :return:
+ """
+ #
+ plot_id = self._myIndicatorsManager.get_canvas_line_index(indicator_key)
+ self._myCanvas.remove_plot_1d(plot_id)
+
+ return
+
+ def removePlot(self, ikey):
+ """
+ """
+ return self._myCanvas.remove_plot_1d(ikey)
+
+ def updateLine(self, ikey, vecx, vecy, linestyle=None, linecolor=None, marker=None, markercolor=None):
+ """
+ """
+ return self._myCanvas.updateLine(ikey, vecx, vecy, linestyle, linecolor, marker, markercolor)
+
+ def update_indicator(self, i_key, color):
+ """
+ Update indicator with new color
+ :param i_key:
+ :param vec_x:
+ :param vec_y:
+ :param color:
+ :return:
+ """
+ if self._myIndicatorsManager.get_line_type(i_key) < 2:
+ # horizontal or vertical
+ canvas_line_index = self._myIndicatorsManager.get_canvas_line_index(i_key)
+ self._myCanvas.updateLine(ikey=canvas_line_index, vecx=None, vecy=None, linecolor=color)
+ else:
+ # 2-way
+ canvas_line_index_h, canvas_line_index_v = self._myIndicatorsManager.get_canvas_line_index(i_key)
+ # h_vec_set, v_vec_set = self._myIndicatorsManager.get_2way_data(i_key)
+
+ self._myCanvas.updateLine(ikey=canvas_line_index_h, vecx=None, vecy=None, linecolor=color)
+ self._myCanvas.updateLine(ikey=canvas_line_index_v, vecx=None, vecy=None, linecolor=color)
+
+ return
+
+ def get_indicator_position(self, indicator_key):
+ """ Get position (x or y) of the indicator
+ :return:
+ """
+ # NEXT - Consider a better and more consistent return
+ vec_x, vec_y = self._myIndicatorsManager.get_data(indicator_key)
+ if vec_x[0] == vec_x[1]:
+ return vec_x[0]
+
+ return vec_y[0]
+
+ def getLineStyleList(self):
+ """
+ """
+ return MplLineStyles
+
+ def getLineMarkerList(self):
+ """
+ """
+ return MplLineMarkers
+
+ def getLineBasicColorList(self):
+ """
+ """
+ return MplBasicColors
+
+ def getDefaultColorMarkerComboList(self):
+ """ Get a list of line/marker color and marker style combination
+ as default to add more and more line to plot
+ """
+ return self._myCanvas.getDefaultColorMarkerComboList()
+
+ def getNextLineMarkerColorCombo(self):
+ """ As auto line's marker and color combo list is used,
+ get the NEXT marker/color combo
+ """
+ # get from list
+ marker, color = self._myLineMarkerColorList[self._myLineMarkerColorIndex]
+ # process marker if it has information
+ if marker.count(' (') > 0:
+ marker = marker.split(' (')[0]
+ print "[DB] Print line %d: marker = %s, color = %s" % (self._myLineMarkerColorIndex, marker, color)
+
+ # update the index
+ self._myLineMarkerColorIndex += 1
+ if self._myLineMarkerColorIndex == len(self._myLineMarkerColorList):
+ self._myLineMarkerColorIndex = 0
+
+ return marker, color
+
+ def resetLineColorStyle(self):
+ """ Reset the auto index for line's color and style
+ """
+ self._myLineMarkerColorIndex = 0
+ return
+
+ # NEXT-Urgent! - Find out difference between setXYLimit() and setXYLimits()
+ def setXYLimit(self, xmin, xmax, ymin, ymax):
+ """ Set X-Y limit automatically
+ """
+ self._myCanvas.axes.set_xlim([xmin, xmax])
+ self._myCanvas.axes.set_ylim([ymin, ymax])
+
+ self._myCanvas.draw()
+
+ return
+
+ def setXYLimits(self, xmin=None, xmax=None, ymin=None, ymax=None):
+ """
+ """
+ return self._myCanvas.setXYLimit(xmin, xmax, ymin, ymax)
+
+ def setAutoLineMarkerColorCombo(self):
+ """
+ """
+ self._myLineMarkerColorList = []
+ for marker in MplLineMarkers:
+ for color in MplBasicColors:
+ self._myLineMarkerColorList.append( (marker, color) )
+
+ return
+
+ def setLineMarkerColorIndex(self, newindex):
+ """
+ """
+ self._myLineMarkerColorIndex = newindex
+
+ return
+
+
+class Qt4MplCanvas(FigureCanvas):
+ """ A customized Qt widget for matplotlib figure.
+ It can be used to replace GraphicsView of QtGui
+ """
+ def __init__(self, parent):
+ """ Initialization
+ """
+ # from mpl_toolkits.axes_grid1 import host_subplot
+ # import mpl_toolkits.axisartist as AA
+ # import matplotlib.pyplot as plt
+
+ # Instantiating matplotlib Figure
+ self.fig = Figure()
+ self.fig.patch.set_facecolor('white')
+
+ if True:
+ self.axes = self.fig.add_subplot(111) # return: matplotlib.axes.AxesSubplot
+ self.axes2 = None
+ else:
+ self.axes = self.fig.add_host_subplot(111)
+
+ # Initialize parent class and set parent
+ FigureCanvas.__init__(self, self.fig)
+ self.setParent(parent)
+
+ # Set size policy to be able to expanding and resizable with frame
+ FigureCanvas.setSizePolicy(self, QtGui.QSizePolicy.Expanding,QtGui.QSizePolicy.Expanding)
+ FigureCanvas.updateGeometry(self)
+
+ # Variables to manage all lines/subplot
+ self._lineDict = {}
+ self._lineIndex = 0
+
+ # legend and color bar
+ self._colorBar = None
+
+ return
+
+ def add_plot_1d(self, vec_x, vec_y, y_err=None, color=None, label="", x_label=None, y_label=None,
+ marker=None, line_style=None, line_width=1):
+ """
+
+ :param vec_x: numpy array X
+ :param vec_y: numpy array Y
+ :param y_err:
+ :param color:
+ :param label:
+ :param x_label:
+ :param y_label:
+ :param marker:
+ :param line_style:
+ :param line_width:
+ :return: new key
+ """
+ # Check input
+ if isinstance(vec_x, np.ndarray) is False or isinstance(vec_y, np.ndarray) is False:
+ raise NotImplementedError('Input vec_x or vec_y for addPlot() must be numpy.array.')
+ plot_error = y_err is not None
+ if plot_error is True:
+ if isinstance(y_err, np.ndarray) is False:
+ raise NotImplementedError('Input y_err must be either None or numpy.array.')
+
+ if len(vec_x) != len(vec_y):
+ raise NotImplementedError('Input vec_x and vec_y must have same size.')
+ if plot_error is True and len(y_err) != len(vec_x):
+ raise NotImplementedError('Input vec_x, vec_y and y_error must have same size.')
+
+ # Hold previous data
+ self.axes.hold(True)
+
+ # process inputs and defaults
+ if color is None:
+ color = (0,1,0,1)
+ if marker is None:
+ marker = 'o'
+ if line_style is None:
+ line_style = '-'
+
+ # color must be RGBA (4-tuple)
+ if plot_error is False:
+ print "[DB] line_style = ", line_style, "line_width = ", line_width, "marker = ", marker, "color = ", color
+ r = self.axes.plot(vec_x, vec_y, color=color, marker=marker, linestyle=line_style,
+ label=label, linewidth=line_width)
+ # return: list of matplotlib.lines.Line2D object
+ else:
+ r = self.axes.errorbar(vec_x, vec_y, yerr=y_err, color=color, marker=marker, linestyle=line_style,
+ label=label, linewidth=line_width)
+
+ self.axes.set_aspect('auto')
+
+ # set x-axis and y-axis label
+ if x_label is not None:
+ self.axes.set_xlabel(x_label, fontsize=20)
+ if y_label is not None:
+ self.axes.set_ylabel(y_label, fontsize=20)
+
+ # set/update legend
+ self._setupLegend()
+
+ # Register
+ line_key = self._lineIndex
+ if len(r) == 1:
+ self._lineDict[line_key] = r[0]
+ self._lineIndex += 1
+ else:
+ print "Impoooooooooooooooosible! Return from plot is a %d-tuple. " % (len(r))
+
+ # Flush/commit
+ self.draw()
+
+ return line_key
+
+ def add_1d_plot_right(self, x, y, color=None, label="", x_label=None, ylabel=None, marker=None, linestyle=None,
+ linewidth=1):
+ """ Add a line (1-d plot) at right axis
+ """
+ if self.axes2 is None:
+ self.axes2 = self.axes.twinx()
+ # print self.par1, type(self.par1)
+
+ # Hold previous data
+ self.axes2.hold(True)
+
+ # Default
+ if color is None:
+ color = (0, 1, 0, 1)
+ if marker is None:
+ marker = 'o'
+ if linestyle is None:
+ linestyle = '-'
+
+ # Special default
+ if len(label) == 0:
+ label = 'right'
+ color = 'red'
+
+ # color must be RGBA (4-tuple)
+ r = self.axes2.plot(x, y, color=color, marker=marker, linestyle=linestyle,
+ label=label, linewidth=linewidth)
+ # return: list of matplotlib.lines.Line2D object
+
+ self.axes2.set_aspect('auto')
+
+ # set x-axis and y-axis label
+ if x_label is not None:
+ self.axes2.set_xlabel(x_label, fontsize=20)
+ if ylabel is not None:
+ self.axes2.set_ylabel(ylabel, fontsize=20)
+
+ # set/update legend
+ self._setupLegend()
+
+ # Register
+ line_key = -1
+ if len(r) == 1:
+ line_key = self._lineIndex
+ self._lineDict[line_key] = r[0]
+ self._lineIndex += 1
+ else:
+ print "Impoooooooooooooooosible!"
+
+ # Flush/commit
+ self.draw()
+
+ return line_key
+
+
+ def addPlot2D(self, array2d, xmin, xmax, ymin, ymax, holdprev, yticklabels=None):
+ """ Add a 2D plot
+
+ Arguments:
+ - yticklabels :: list of string for y ticks
+ """
+ # Release the current image
+ self.axes.hold(holdprev)
+
+ # Do plot
+ # y ticks will be shown on line 1, 4, 23, 24 and 30
+ # yticks = [1, 4, 23, 24, 30]
+ # self.axes.set_yticks(yticks)
+
+ # show image
+ imgplot = self.axes.imshow(array2d, extent=[xmin,xmax,ymin,ymax], interpolation='none')
+ # set y ticks as an option:
+ if yticklabels is not None:
+ # it will always label the first N ticks even image is zoomed in
+ print "--------> [FixMe]: Set up the Y-axis ticks is erroreous"
+ #self.axes.set_yticklabels(yticklabels)
+
+ # explicitly set aspect ratio of the image
+ self.axes.set_aspect('auto')
+
+ # Set color bar. plt.colorbar() does not work!
+ if self._colorBar is None:
+ # set color map type
+ imgplot.set_cmap('spectral')
+ self._colorBar = self.fig.colorbar(imgplot)
+ else:
+ self._colorBar.update_bruteforce(imgplot)
+
+ # Flush...
+ self._flush()
+
+ return
+
+ def addImage(self, imagefilename):
+ """ Add an image by file
+ """
+ #import matplotlib.image as mpimg
+
+ # set aspect to auto mode
+ self.axes.set_aspect('auto')
+
+ img = matplotlib.image.imread(str(imagefilename))
+ # lum_img = img[:,:,0]
+ # FUTURE : refactor for image size, interpolation and origin
+ imgplot = self.axes.imshow(img, extent=[0, 1000, 800, 0], interpolation='none', origin='lower')
+
+ # Set color bar. plt.colorbar() does not work!
+ if self._colorBar is None:
+ # set color map type
+ imgplot.set_cmap('spectral')
+ self._colorBar = self.fig.colorbar(imgplot)
+ else:
+ self._colorBar.update_bruteforce(imgplot)
+
+ self._flush()
+
+ return
+
+ def clear_all_1d_plots(self):
+ """ Remove all lines from the canvas
+ """
+ for ikey in self._lineDict.keys():
+ plot = self._lineDict[ikey]
+ if plot is None:
+ continue
+ if isinstance(plot, tuple) is False:
+ try:
+ self.axes.lines.remove(plot)
+ except ValueError as e:
+ print "[Error] Plot %s is not in axes.lines which has %d lines. Error mesage: %s" % (
+ str(plot), len(self.axes.lines), str(e))
+ self._lineDict[ikey] = None
+ else:
+ # error bar
+ plot[0].remove()
+ for line in plot[1]:
+ line.remove()
+ for line in plot[2]:
+ line.remove()
+ self._lineDict[ikey] = None
+ # ENDIF(plot)
+ # ENDFOR
+
+ self._setupLegend()
+
+ self.draw()
+
+ return
+
+ def clear_canvas(self):
+ """ Clear data including lines and image from canvas
+ """
+ # clear the image for next operation
+ self.axes.hold(False)
+
+ # Clear all lines
+ self.clear_all_1d_plots()
+
+ # clear image
+ self.axes.cla()
+ # Try to clear the color bar
+ if len(self.fig.axes) > 1:
+ self.fig.delaxes(self.fig.axes[1])
+ self._colorBar = None
+ # This clears the space claimed by color bar but destroys sub_plot too.
+ self.fig.clear()
+ # Re-create subplot
+ self.axes = self.fig.add_subplot(111)
+
+ # flush/commit
+ self._flush()
+
+ return
+
+
+ def getLastPlotIndexKey(self):
+ """ Get the index/key of the last added line
+ """
+ return self._lineIndex-1
+
+
+ def getPlot(self):
+ """ reture figure's axes to expose the matplotlib figure to PyQt client
+ """
+ return self.axes
+
+ def getXLimit(self):
+ """ Get limit of Y-axis
+ """
+ return self.axes.get_xlim()
+
+ def getYLimit(self):
+ """ Get limit of Y-axis
+ """
+ return self.axes.get_ylim()
+
+ def setXYLimit(self, xmin, xmax, ymin, ymax):
+ """
+ """
+ # for X
+ xlims = self.axes.get_xlim()
+ xlims = list(xlims)
+ if xmin is not None:
+ xlims[0] = xmin
+ if xmax is not None:
+ xlims[1] = xmax
+ self.axes.set_xlim(xlims)
+
+ # for Y
+ ylims = self.axes.get_ylim()
+ ylims = list(ylims)
+ if ymin is not None:
+ ylims[0] = ymin
+ if ymax is not None:
+ ylims[1] = ymax
+ self.axes.set_ylim(ylims)
+
+ # try draw
+ self.draw()
+
+ return
+
+ def remove_plot_1d(self, plot_key):
+ """ Remove the line with its index as key
+ :param plot_key:
+ :return:
+ """
+ # self._lineDict[ikey].remove()
+ print 'Remove line... ',
+
+ # Get all lines in list
+ lines = self.axes.lines
+ assert isinstance(lines, list)
+
+ print 'Number of lines = %d, List: %s' % (len(lines), str(lines))
+ print 'Line to remove: key = %s, Line Dict has key = %s' % (str(plot_key), str(self._lineDict.has_key(plot_key)))
+
+ if plot_key in self._lineDict:
+ self.axes.lines.remove(self._lineDict[plot_key])
+ self._lineDict[plot_key] = None
+ else:
+ raise RuntimeError('Line with ID %s is not recorded.' % plot_key)
+
+ # Draw
+ self.draw()
+
+ return
+
+ def updateLine(self, ikey, vecx, vecy, linestyle=None, linecolor=None, marker=None, markercolor=None):
+ """
+ """
+ line = self._lineDict[ikey]
+
+ if vecx is not None and vecy is not None:
+ line.set_xdata(vecx)
+ line.set_ydata(vecy)
+
+ if linecolor is not None:
+ line.set_color(linecolor)
+
+ if linestyle is not None:
+ line.set_linestyle(linestyle)
+
+ if marker is not None:
+ line.set_marker(marker)
+
+ if markercolor is not None:
+ line.set_markerfacecolor(markercolor)
+
+ oldlabel = line.get_label()
+ line.set_label(oldlabel)
+
+ self.axes.legend()
+
+ # commit
+ self.draw()
+
+ return
+
+ def getLineStyleList(self):
+ """
+ """
+ return MplLineStyles
+
+
+ def getLineMarkerList(self):
+ """
+ """
+ return MplLineMarkers
+
+ def getLineBasicColorList(self):
+ """
+ """
+ return MplBasicColors
+
+ def getDefaultColorMarkerComboList(self):
+ """ Get a list of line/marker color and marker style combination
+ as default to add more and more line to plot
+ """
+ combolist = []
+ nummarkers = len(MplLineMarkers)
+ numcolors = len(MplBasicColors)
+
+ for i in xrange(nummarkers):
+ marker = MplLineMarkers[i]
+ for j in xrange(numcolors):
+ color = MplBasicColors[j]
+ combolist.append( (marker, color) )
+ # ENDFOR (j)
+ # ENDFOR(i)
+
+ return combolist
+
+ def _flush(self):
+ """ A dirty hack to flush the image
+ """
+ w, h = self.get_width_height()
+ self.resize(w+1,h)
+ self.resize(w,h)
+
+ return
+
+ def _setupLegend(self, location='best'):
+ """ Set up legend
+ self.axes.legend()
+ Handler is a Line2D object. Lable maps to the line object
+ """
+ loclist = [
+ "best",
+ "upper right",
+ "upper left",
+ "lower left",
+ "lower right",
+ "right",
+ "center left",
+ "center right",
+ "lower center",
+ "upper center",
+ "center"]
+
+ # Check legend location valid or not
+ if location not in loclist:
+ location = 'best'
+
+ handles, labels = self.axes.get_legend_handles_labels()
+ self.axes.legend(handles, labels, loc=location)
+ # print handles
+ # print labels
+ #self.axes.legend(self._myLegendHandlers, self._myLegentLabels)
+
+ return
+
+# END-OF-CLASS (MplGraphicsView)
+
+
+class MyNavigationToolbar(NavigationToolbar2):
+ """ A customized navigation tool bar attached to canvas
+ Note:
+ * home, left, right: will not disable zoom/pan mode
+ * zoom and pan: will turn on/off both's mode
+
+ Other methods
+ * drag_pan(self, event): event handling method for dragging canvas in pan-mode
+ """
+ NAVIGATION_MODE_NONE = 0
+ NAVIGATION_MODE_PAN = 1
+ NAVIGATION_MODE_ZOOM = 2
+
+ def __init__(self, parent, canvas):
+ """ Initialization
+ """
+ NavigationToolbar2.__init__(self, canvas, canvas)
+
+ self._myParent = parent
+ self._navigationMode = MyNavigationToolbar.NAVIGATION_MODE_NONE
+
+ return
+
+ def get_mode(self):
+ """
+ :return: integer as none/pan/zoom mode
+ """
+ return self._navigationMode
+
+ # Overriding base's methods
+ def draw(self):
+ """
+ Canvas is drawn called by pan(), zoom()
+ :return:
+ """
+ NavigationToolbar2.draw(self)
+
+ self._myParent.evt_view_updated()
+
+ return
+
+ def pan(self, *args):
+ """
+
+ :param args:
+ :return:
+ """
+ NavigationToolbar2.pan(self, args)
+
+ if self._navigationMode == MyNavigationToolbar.NAVIGATION_MODE_PAN:
+ # out of pan mode
+ self._navigationMode = MyNavigationToolbar.NAVIGATION_MODE_NONE
+ else:
+ # into pan mode
+ self._navigationMode = MyNavigationToolbar.NAVIGATION_MODE_PAN
+
+ return
+
+ def zoom(self, *args):
+ """
+ Turn on/off zoom (zoom button)
+ :param args:
+ :return:
+ """
+ NavigationToolbar2.zoom(self, args)
+
+ if self._navigationMode == MyNavigationToolbar.NAVIGATION_MODE_ZOOM:
+ # out of zoom mode
+ self._navigationMode = MyNavigationToolbar.NAVIGATION_MODE_NONE
+ else:
+ # into zoom mode
+ self._navigationMode = MyNavigationToolbar.NAVIGATION_MODE_ZOOM
+
+ return
+
+ def _update_view(self):
+ """
+ view update called by home(), back() and forward()
+ :return:
+ """
+ NavigationToolbar2._update_view(self)
+
+ self._myParent.evt_view_updated()
+
+ return
+
diff --git a/scripts/HFIR_4Circle_Reduction/reduce4circleControl.py b/scripts/HFIR_4Circle_Reduction/reduce4circleControl.py
new file mode 100644
index 0000000000000000000000000000000000000000..bb11355d3c1b09e8e5b011cd8b698d64614939aa
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/reduce4circleControl.py
@@ -0,0 +1,1263 @@
+#pylint: disable=C0302,C0103,R0902,R0904,R0913,W0212,W0621,R0912
+################################################################################
+#
+# Controlling class
+#
+# == Data download and storage ==
+# - Local data storage (local-mode)
+# - Download from internet to cache (download-mode)
+#
+################################################################################
+import os
+import urllib2
+
+import numpy
+
+import mantid
+import mantid.simpleapi as api
+from mantid.api import AnalysisDataService
+
+DebugMode = True
+
+DET_X_SIZE = 256
+DET_Y_SIZE = 256
+
+
+class PeakInfo(object):
+ """ Class containing a peak's information for GUI
+ In order to manage some operations for a peak
+ It does not contain peak workspace but will hold
+ """
+ def __init__(self, parent):
+ """ Init
+ """
+ assert isinstance(parent, CWSCDReductionControl)
+
+ # Define class variable
+ self._myParent = parent
+ self._userHKL = [0, 0, 0]
+
+ self._myExpNumber = None
+ self._myScanNumber = None
+ self._myPtNumber = None
+
+ self._myPeakWSKey = (None, None, None)
+ self._myPeakIndex = None
+ # IPeak instance
+ self._myPeak = None
+
+ self._myLastPeakUB = None
+
+ return
+
+ def get_peak_workspace(self):
+ """
+ Get peak workspace related
+ :return:
+ """
+ assert isinstance(self._myPeakWSKey, tuple)
+ exp_number, scan_number, pt_number = self._myPeakWSKey
+
+ return self._myParent.get_ub_peak_ws(exp_number, scan_number, pt_number)[1]
+
+ def get_peak_ws_hkl(self):
+ """ Get HKL from PeakWorkspace
+ :return:
+ """
+ hkl = self._myPeak.getHKL()
+
+ return hkl.getX(), hkl.getY(), hkl.getZ()
+
+ def get_user_hkl(self):
+ """
+ Get HKL set to this object by client
+ :return: 3-tuple of float as (H, K, L)
+ """
+ hkl = self._userHKL
+
+ return hkl[0], hkl[1], hkl[2]
+
+ def set_from_run_info(self, exp_number, scan_number, pt_number):
+ """ Set from run information with parent
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ status, peak_ws = self._myParent.get_ub_peak_ws(exp_number, scan_number, pt_number)
+ if status is True:
+ self._myPeakWSKey = (exp_number, scan_number, pt_number)
+ self._myPeakIndex = 0
+ self._myPeak = peak_ws.getPeak(0)
+ else:
+ error_message = peak_ws
+ return False, error_message
+
+ self._myExpNumber = exp_number
+ self._myScanNumber = scan_number
+ self._myPtNumber = pt_number
+
+ return True, ''
+
+ def set_from_peak_ws(self, peak_ws, peak_index):
+ """
+ Set from peak workspace
+ :param peak_ws:
+ :return:
+ """
+ # Check
+ assert isinstance(peak_ws, mantid.dataobjects.PeaksWorkspace)
+
+ # Get peak
+ try:
+ peak = peak_ws.getPeak(peak_index)
+ except RuntimeError as run_err:
+ raise RuntimeError(run_err)
+
+ self._myPeak = peak
+
+ return
+
+ def set_peak_ws_hkl_from_user(self):
+ """
+
+ :return:
+ """
+ # Check
+ if isinstance(self._myPeak, mantid.api.IPeak) is False:
+ raise RuntimeError('self._myPeakWS should be an instance of mantid.api.IPeak. '
+ 'But it is of instance of %s now.' % str(type(self._myPeak)))
+
+ # Get hkl
+ h, k, l = self._userHKL
+ print '[DB] PeakInfo Get User HKL = (%f, %f, %f) to IPeak ' % (h, k, l)
+
+ self._myPeak.setHKL(h, k, l)
+
+ return
+
+ def set_user_hkl(self, h, k, l):
+ """
+ Set HKL to this peak Info
+ :return:
+ """
+ assert isinstance(h, float)
+ assert isinstance(k, float)
+ assert isinstance(l, float)
+
+ self._userHKL[0] = h
+ self._userHKL[1] = k
+ self._userHKL[2] = l
+
+ print '[DB] PeakInfo Set User HKL to (%f, %f, %f) ' % (self._userHKL[0], self._userHKL[1], self._userHKL[2])
+
+ return
+
+ def getExpInfo(self):
+ """
+
+ :return: 3-tuple of integer as experiment number, scan number and Pt number
+ """
+ return self._myExpNumber, self._myScanNumber, self._myPtNumber
+
+ def getQSample(self):
+ """
+
+ :return: 3-tuple of floats as Qx, Qy, Qz
+ """
+ q_sample = self._myPeak.getQSampleFrame()
+ return q_sample.getX(), q_sample.getY(), q_sample.getZ()
+
+
+class CWSCDReductionControl(object):
+ """ Controlling class for reactor-based single crystal diffraction reduction
+ """
+ def __init__(self, instrument_name=None):
+ """ init
+ """
+ if isinstance(instrument_name, str):
+ self._instrumentName = instrument_name
+ elif instrument_name is None:
+ self._instrumentName = ''
+ else:
+ raise RuntimeError('Instrument name %s of type %s is not allowed.' % (str(instrument_name),
+ str(type(instrument_name))))
+
+ # Experiment number, data storage
+ # No Use/Confusing: self._expNumber = 0
+
+ self._dataDir = None
+ self._workDir = '/tmp'
+
+ self._myServerURL = ''
+
+ # Some set up
+ self._expNumber = None
+
+ # Container for MDEventWorkspace for each Pt.
+ self._myPtMDDict = dict()
+ # Container for loaded workspaces
+ self._mySpiceTableDict = {}
+ # Container for loaded raw pt workspace
+ self._myRawDataWSDict = dict()
+ # Container for PeakWorkspaces for calculating UB matrix
+ self._myUBPeakWSDict = dict()
+ # Container for UB matrix
+ self._myUBMatrixDict = dict()
+
+ # Peak Info
+ self._myPeakInfoDict = dict()
+ # Last UB matrix calculated
+ self._myLastPeakUB = None
+ # Flag for data storage
+ self._cacheDataOnly = False
+
+ # A dictionary to manage all loaded and processed MDEventWorkspaces
+ # self._expDataDict = {}
+
+ return
+
+ def add_peak_info(self, exp_number, scan_number, pt_number):
+ """ Add a peak info for calculating UB matrix
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return: (boolean, PeakInfo/string)
+ """
+ has_peak_ws, peak_ws = self.get_ub_peak_ws(exp_number, scan_number, pt_number)
+ if has_peak_ws is False:
+ err_msg = 'No peak workspace found for Exp %s Scan %s Pt %s' % (
+ exp_number, scan_number, pt_number)
+ print '\n[DB] Fail to add peak info due to %s\n' % err_msg
+ return False, err_msg
+
+ if peak_ws.rowCount() > 1:
+ err_msg = 'There are more than 1 peak in PeaksWorkspace.'
+ print '\n[DB] Fail to add peak info due to %s\n' % err_msg
+ return False, err_msg
+
+ peak_info = PeakInfo(self)
+ peak_info.set_from_run_info(exp_number, scan_number, pt_number)
+
+ # Add to data management
+ self._myPeakInfoDict[(exp_number, scan_number, pt_number)] = peak_info
+
+ return True, peak_info
+
+ def calculate_ub_matrix(self, peak_info_list, a, b, c, alpha, beta, gamma):
+ """
+ Calculate UB matrix
+
+ Set Miller index from raw data in Workspace2D.
+ :param peakws:
+ :param a:
+ :param b:
+ :param c:
+ :param alpha:
+ :param beta:
+ :param gamma:
+ :return:
+ """
+ # Check
+ assert isinstance(peak_info_list, list)
+ for peak_info in peak_info_list:
+ if isinstance(peak_info, PeakInfo) is False:
+ raise NotImplementedError('Input PeakList is of type %s.' % str(type(peak_info_list[0])))
+ assert isinstance(peak_info, PeakInfo)
+
+ if len(peak_info_list) < 2:
+ return False, 'Too few peaks are input to calculate UB matrix. Must be >= 2.'
+
+ # Construct a new peak workspace by combining all single peak
+ ub_peak_ws_name = 'Temp_UB_Peak'
+ ub_peak_ws = api.CloneWorkspace(InputWorkspace=peak_info_list[0].get_peak_workspace(),
+ OutputWorkspace=ub_peak_ws_name)
+
+ for i_peak_info in xrange(1, len(peak_info_list)):
+ # Set HKL as optional
+ peak_ws = peak_info_list[i_peak_info].get_peak_workspace()
+
+ # Combine peak workspace
+ ub_peak_ws = api.CombinePeaksWorkspaces(LHSWorkspace=ub_peak_ws,
+ RHSWorkspace=peak_ws,
+ CombineMatchingPeaks=False,
+ OutputWorkspace=ub_peak_ws_name)
+ # END-FOR(i_peak_info)
+
+ # Calculate UB matrix
+ try:
+ api.CalculateUMatrix(PeaksWorkspace=ub_peak_ws_name,
+ a=a, b=b, c=c, alpha=alpha, beta=beta, gamma=gamma)
+ except ValueError as val_err:
+ return False, str(val_err)
+
+ ub_matrix = ub_peak_ws.sample().getOrientedLattice().getUB()
+
+ self._myLastPeakUB = ub_peak_ws
+
+ return True, ub_matrix
+
+ def does_raw_loaded(self, exp_no, scan_no, pt_no):
+ """
+ Check whether the raw Workspace2D for a Pt. exists
+ :param exp_no:
+ :param scan_no:
+ :param pt_no:
+ :return:
+ """
+ return (exp_no, scan_no, pt_no) in self._myRawDataWSDict
+
+ def does_spice_loaded(self, exp_no, scan_no):
+ """ Check whether a SPICE file has been loaded
+ :param exp_no:
+ :param scan_no:
+ :return:
+ """
+ return (exp_no, scan_no) in self._mySpiceTableDict
+
+ def download_spice_file(self, exp_number, scan_number, over_write):
+ """
+ Download a scan/pt data from internet
+ :param exp_number: experiment number
+ :param scan_number:
+ :return:
+ """
+ # Check
+ if exp_number is None:
+ exp_number = self._expNumber
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+
+ # Generate the URL for SPICE data file
+ file_url = '%sexp%d/Datafiles/HB3A_exp%04d_scan%04d.dat' % (self._myServerURL, exp_number,
+ exp_number, scan_number)
+ file_name = '%s_exp%04d_scan%04d.dat' % (self._instrumentName, exp_number, scan_number)
+ file_name = os.path.join(self._dataDir, file_name)
+ if os.path.exists(file_name) is True and over_write is False:
+ return True, file_name
+
+ # Download
+ try:
+ api.DownloadFile(Address=file_url, Filename=file_name)
+ except RuntimeError as run_err:
+ return False, str(run_err)
+
+ # Check file exist?
+ if os.path.exists(file_name) is False:
+ return False, "Unable to locate downloaded file %s." % file_name
+
+ return True, file_name
+
+ def download_spice_xml_file(self, scan_no, pt_no, exp_no=None, overwrite=False):
+ """ Download a SPICE XML file for one measurement in a scan
+ :param scan_no:
+ :param pt_no:
+ :param exp_no:
+ :param overwrite:
+ :return: tuple (boolean, local file name/error message)
+ """
+ # Experiment number
+ if exp_no is None:
+ exp_no = self._expNumber
+
+ # Form the target file name and path
+ xml_file_name = '%s_exp%d_scan%04d_%04d.xml' % (self._instrumentName, exp_no, scan_no, pt_no)
+ local_xml_file_name = os.path.join(self._dataDir, xml_file_name)
+ if os.path.exists(local_xml_file_name) is True and overwrite is False:
+ return True, local_xml_file_name
+
+ # Generate the URL for XML file
+ xml_file_url = '%sexp%d/Datafiles/%s' % (self._myServerURL, exp_no, xml_file_name)
+
+ # Download
+ try:
+ api.DownloadFile(Address=xml_file_url,
+ Filename=local_xml_file_name)
+ except RuntimeError as run_err:
+ return False, 'Unable to download Detector XML file %s dur to %s.' % (xml_file_name, str(run_err))
+
+ # Check file exist?
+ if os.path.exists(local_xml_file_name) is False:
+ return False, "Unable to locate downloaded file %s."%(local_xml_file_name)
+
+ return True, local_xml_file_name
+
+ def download_data_set(self, scan_list, overwrite=False):
+ """
+ Download data set including (1) spice file for a scan and (2) XML files for measurements
+ :param scan_list:
+ :return:
+ """
+ # Check
+ if self._expNumber is None:
+ raise RuntimeError('Experiment number is not set up for controller.')
+
+ error_message = ''
+
+ for scan_no in scan_list:
+ # Download single spice file for a run
+ status, ret_obj = self.download_spice_file(exp_number=self._expNumber,
+ scan_number=scan_no,
+ over_write=overwrite)
+
+ # Reject if SPICE file cannot download
+ if status is False:
+ error_message += '%s\n' % ret_obj
+ continue
+
+ # Load SPICE file to Mantid
+ spice_file_name = ret_obj
+ status, ret_obj = self.load_spice_scan_file(self._expNumber, scan_no, spice_file_name)
+ if status is False:
+ error_message = ret_obj
+ return False, error_message
+ else:
+ spice_table = self._mySpiceTableDict[(self._expNumber, scan_no)]
+ assert spice_table
+ pt_no_list = self._get_pt_list_from_spice_table(spice_table)
+
+ # Download all single-measurement file
+ for pt_no in pt_no_list:
+ status, ret_obj = self.download_spice_xml_file(scan_no, pt_no, overwrite=overwrite)
+ if status is False:
+ error_message += '%s\n' % ret_obj
+ # END-FOR
+ # END-FOR (scan_no)
+
+ return True, error_message
+
+ def existDataFile(self, scanno, ptno):
+ """
+ Check whether data file for a scan or pt number exists
+ :param scanno:
+ :param ptno:
+ :return:
+ """
+ # Check spice file
+ spice_file_name = '%s_exp%04d_scan%04d.dat'%(self._instrumentName,
+ self._expNumber, scanno)
+ spice_file_name = os.path.join(self._dataDir, spice_file_name)
+ if os.path.exists(spice_file_name) is False:
+ return False, 'Spice data file %s cannot be found.'% spice_file_name
+
+ # Check xml file
+ xmlfilename = '%s_exp%d_scan%04d_%04d.xml'%(self._instrumentName, self._expNumber,
+ scanno, ptno)
+ xmlfilename = os.path.join(self._dataDir, xmlfilename)
+ if os.path.exists(xmlfilename) is False:
+ return (False, "Pt. XML file %s cannot be found."%(xmlfilename))
+
+ return True, ""
+
+ def find_peak(self, exp_number, scan_number, pt_number):
+ """ Find 1 peak in sample Q space for UB matrix
+ :param scan_number:
+ :param pt_number:
+ :return:tuple as (boolean, object) such as (false, error message) and (true, PeakInfo object)
+
+ This part will be redo as 11847_Load_HB3A_Experiment
+ """
+ # Check
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ # Download or make sure data are there
+ status_sp, err_msg_sp = self.download_spice_file(exp_number, scan_number, over_write=False)
+ status_det, err_msg_det = self.download_spice_xml_file(scan_number, pt_number, exp_number,
+ overwrite=False)
+ if status_sp is False or status_det is False:
+ return False, 'Unable to access data (1) %s (2) %s' % (err_msg_sp, err_msg_det)
+
+ # Collect reduction information: example
+ exp_info_ws_name = get_pt_info_ws_name(exp_number, scan_number)
+ virtual_instrument_info_table_name = get_virtual_instrument_table_name(exp_number, scan_number, pt_number)
+ api.CollectHB3AExperimentInfo(
+ ExperimentNumber=exp_number,
+ GenerateVirtualInstrument=False,
+ ScanList=[scan_number],
+ PtLists=[-1, pt_number],
+ DataDirectory=self._dataDir,
+ GetFileFromServer=False,
+ Detector2ThetaTolerance=0.01,
+ OutputWorkspace=exp_info_ws_name,
+ DetectorTableWorkspace=virtual_instrument_info_table_name)
+
+ # Load XML file to MD
+ pt_md_ws_name = get_single_pt_md_name(exp_number, scan_number, pt_number)
+ api.ConvertCWSDExpToMomentum(InputWorkspace=exp_info_ws_name,
+ CreateVirtualInstrument=False,
+ OutputWorkspace=pt_md_ws_name,
+ Directory=self._dataDir)
+
+ # Find peak in Q-space
+ pt_peak_ws_name = get_single_pt_peak_ws_name(exp_number, scan_number, pt_number)
+ api.FindPeaksMD(InputWorkspace=pt_md_ws_name, MaxPeaks=10,
+ DensityThresholdFactor=0.01, OutputWorkspace=pt_peak_ws_name)
+ peak_ws = AnalysisDataService.retrieve(pt_peak_ws_name)
+ pt_md_ws = AnalysisDataService.retrieve(pt_md_ws_name)
+ self._myPtMDDict[(exp_number, scan_number, pt_number)] = pt_md_ws
+
+ num_peaks = peak_ws.getNumberPeaks()
+ if num_peaks != 1:
+ err_msg = 'Find %d peak from scan %d pt %d. ' \
+ 'For UB matrix calculation, 1 and only 1 peak is allowed' % (num_peaks, scan_number, pt_number)
+ return False, err_msg
+ else:
+ self._add_ub_peak_ws(exp_number, scan_number, pt_number, peak_ws)
+ status, ret_obj = self.add_peak_info(exp_number, scan_number, pt_number)
+ if status is True:
+ pass
+ # peak_info = ret_obj
+ # peak_info.set_md_ws(pt_md_ws)
+ else:
+ err_msg = ret_obj
+ return False, err_msg
+
+ return True, ''
+
+ def get_experiment(self):
+ """
+ Get experiment number
+ :return:
+ """
+ return self._expNumber
+
+ def get_pt_numbers(self, exp_no, scan_no, load_spice_scan=False):
+ """ Get Pt numbers (as a list) for a scan in an experiment
+ :param exp_no:
+ :param scan_no:
+ :param load_spice_scan:
+ :return: (Boolean, Object) as (status, pt number list/error message)
+ """
+ # Check
+ if exp_no is None:
+ exp_no = self._expNumber
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+
+ # Get workspace
+ table_ws = self._get_spice_workspace(exp_no, scan_no)
+ if table_ws is None:
+ if load_spice_scan is False:
+ return False, 'Spice file for Exp %d Scan %d is not loaded.' % (exp_no, scan_no)
+ else:
+ status, error_message = self.load_spice_scan_file(exp_no, scan_no)
+ if status is True:
+ table_ws = self._get_spice_workspace(exp_no, scan_no)
+ if table_ws is None:
+ raise NotImplementedError('Logic error! Cannot happen!')
+ else:
+ return False, 'Unable to load Spice file for Exp %d Scan %d due to %s.' % (
+ exp_no, scan_no, error_message)
+
+ col_name_list = table_ws.getColumnNames()
+ i_pt = col_name_list.index('Pt.')
+ if i_pt < 0 or i_pt >= len(col_name_list):
+ return False, 'No column with name Pt. can be found in SPICE table.'
+
+ pt_number_list = []
+ num_rows = table_ws.rowCount()
+ for i in xrange(num_rows):
+ pt_number = table_ws.cell(i, i_pt)
+ pt_number_list.append(pt_number)
+
+ return True, pt_number_list
+
+ def get_raw_detector_counts(self, exp_no, scan_no, pt_no):
+ """
+ Get counts on raw detector
+ :param scan_no:
+ :param pt_no:
+ :return: boolean, 2D numpy data
+ """
+ # Get workspace (in memory or loading)
+ raw_ws = self.get_raw_data_workspace(exp_no, scan_no, pt_no)
+ if raw_ws is None:
+ return False, 'Raw data for Exp %d Scan %d Pt %d is not loaded.' % (exp_no, scan_no, pt_no)
+
+ # Convert to numpy array
+ array2d = numpy.ndarray(shape=(DET_X_SIZE, DET_Y_SIZE), dtype='float')
+ for i in xrange(DET_X_SIZE):
+ for j in xrange(DET_Y_SIZE):
+ array2d[i][j] = raw_ws.readY(i * DET_X_SIZE + j)[0]
+
+ return array2d
+
+ def get_sample_log_value(self, exp_number, scan_number, pt_number, log_name):
+ """
+ Get sample log's value
+ :param exp_number:
+ :param scan_number:167
+ :param pt_number:
+ :param log_name:
+ :return: float
+ """
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+ assert isinstance(log_name, str)
+ try:
+ md_ws = self._myPtMDDict[(exp_number, scan_number, pt_number)]
+ except KeyError as ke:
+ return 'Unable to find log value %s due to %s.' % (log_name, str(ke))
+
+ return md_ws.getExperimentInfo(0).run().getProperty(log_name).value
+
+ def get_peak_info(self, exp_number, scan_number, pt_number):
+ """
+ get peak information instance
+ :param exp_number: experiment number. if it is None, then use the current exp number
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ # Check for type
+ if exp_number is None:
+ exp_number = self._expNumber
+
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ # Check for existence
+ if (exp_number, scan_number, pt_number) not in self._myUBPeakWSDict: # self._myPeakInfoDict:
+ err_msg = 'Unable to find PeakInfo for Exp %d Scan %d Pt %d. ' \
+ 'Existing keys are %s' % (exp_number, scan_number, pt_number,
+ str(self._myUBPeakWSDict.keys()))
+ return False, err_msg
+
+ print '[DB] PeakInfoDictionary Keys = %s' % str(self._myPeakInfoDict.keys())
+
+ return True, self._myPeakInfoDict[(exp_number, scan_number, pt_number)]
+
+ def get_ub_peak_ws(self, exp_number, scan_number, pt_number):
+ """
+ Get peak workspace for the peak picked to calculate UB matrix
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ if (exp_number, scan_number, pt_number) not in self._myUBPeakWSDict:
+ return False, 'Exp %d Scan %d Pt %d has no peak workspace.' % (exp_number,
+ scan_number,
+ pt_number)
+
+ return True, self._myUBPeakWSDict[(exp_number, scan_number, pt_number)]
+
+ def index_peak(self, ub_matrix, scan_number, pt_number):
+ """ Index peaks in a Pt.
+ :param ub_matrix: numpy.ndarray (3, 3)
+ :param scan_number:
+ :param pt_number:
+ :return: boolean, object (list of HKL or error message)
+ """
+ # Check
+ assert isinstance(ub_matrix, numpy.ndarray)
+ assert ub_matrix.shape == (3, 3)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ # Find out the peak workspace
+ exp_num = self._expNumber
+ if (exp_num, scan_number, pt_number) in self._myUBPeakWSDict is False:
+ err_msg = 'No PeakWorkspace is found for exp %d scan %d pt %d' % (
+ exp_num, scan_number, pt_number)
+ return False, err_msg
+
+ peak_ws = self._myUBPeakWSDict[(exp_num, scan_number, pt_number)]
+ ub_1d = ub_matrix.reshape(9,)
+ print '[DB] UB matrix = ', ub_1d
+
+ # Set UB
+ api.SetUB(Workspace=peak_ws, UB=ub_1d)
+
+ # Note: IndexPeaks and CalcualtePeaksHKL do the same job
+ # while IndexPeaks has more control on the output
+ num_peak_index, error = api.IndexPeaks(PeaksWorkspace=peak_ws,
+ Tolerance=0.4,
+ RoundHKLs=False)
+
+ if num_peak_index == 0:
+ return False, 'No peak can be indexed.'
+ elif num_peak_index > 1:
+ raise RuntimeError('Case for PeaksWorkspace containing more than 1 peak is not '
+ 'considered. Contact developer for this issue.')
+ else:
+ hkl_v3d = peak_ws.getPeak(0).getHKL()
+ hkl = [hkl_v3d.X(), hkl_v3d.Y(), hkl_v3d.Z()]
+
+ return True, (hkl, error)
+
+ def load_spice_scan_file(self, exp_no, scan_no, spice_file_name=None):
+ """
+ Load a SPICE scan file to table workspace and run information matrix workspace.
+ :param scan_no:
+ :param spice_file_name:
+ :return: status (boolean), error message (string)
+ """
+ # Default for exp_no
+ if exp_no is None:
+ exp_no = self._expNumber
+
+ # Check whether the workspace has been loaded
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+ out_ws_name = get_spice_table_name(exp_no, scan_no)
+ if (exp_no, scan_no) in self._mySpiceTableDict:
+ return True, out_ws_name
+
+ # Form standard name for a SPICE file if name is not given
+ if spice_file_name is None:
+ spice_file_name = os.path.join(self._dataDir, get_spice_file_name(exp_no, scan_no))
+
+ # Download SPICE file if necessary
+ if os.path.exists(spice_file_name) is False:
+ self.download_spice_file(exp_no, scan_no, over_write=True)
+
+ try:
+ spice_table_ws, info_matrix_ws = api.LoadSpiceAscii(Filename=spice_file_name,
+ OutputWorkspace=out_ws_name,
+ RunInfoWorkspace='TempInfo')
+ api.DeleteWorkspace(Workspace=info_matrix_ws)
+ except RuntimeError as run_err:
+ return False, 'Unable to load SPICE data %s due to %s' % (spice_file_name, str(run_err))
+
+ # Store
+ self._add_spice_workspace(exp_no, scan_no, spice_table_ws)
+
+ return True, out_ws_name
+
+ def load_spice_xml_file(self, exp_no, scan_no, pt_no, xml_file_name=None):
+ """
+ Load SPICE's XML file to
+ :param scan_no:
+ :param pt_no:
+ :return:
+ """
+ # Form XMIL file as ~/../HB3A_exp355_scan%04d_%04d.xml'%(scan_no, pt)
+ if xml_file_name is None:
+ xml_file_name = os.path.join(self._dataDir,
+ 'HB3A_exp%d_scan%04d_%04d.xml' % (exp_no, scan_no, pt_no))
+
+ # Get spice table
+ spice_table_ws = self._get_spice_workspace(exp_no, scan_no)
+ assert isinstance(spice_table_ws, mantid.dataobjects.TableWorkspace)
+ spice_table_name = spice_table_ws.name()
+
+ # Load SPICE Pt. file
+ # spice_table_name = 'Table_Exp%d_Scan%04d' % (exp_no, scan_no)
+ pt_ws_name = get_raw_data_workspace_name(exp_no, scan_no, pt_no)
+ try:
+ ret_obj = api.LoadSpiceXML2DDet(Filename=xml_file_name,
+ OutputWorkspace=pt_ws_name,
+ DetectorGeometry='256,256',
+ SpiceTableWorkspace=spice_table_name,
+ PtNumber=pt_no)
+ except RuntimeError as run_err:
+ return False, str(run_err)
+
+ pt_ws = ret_obj
+
+ # Add data storage
+ self._add_raw_workspace(exp_no, scan_no, pt_no, pt_ws)
+
+ return True, pt_ws_name
+
+ def group_workspaces(self, exp_number, group_name):
+ """
+
+ :return:
+ """
+ # Find out the input workspace name
+ ws_names_str = ''
+ for key in self._myRawDataWSDict.keys():
+ if key[0] == exp_number:
+ ws_names_str += '%s,' % self._myRawDataWSDict[key].name()
+
+ for key in self._mySpiceTableDict.keys():
+ if key[0] == exp_number:
+ ws_names_str += '%s,' % self._mySpiceTableDict[key].name()
+
+ # Check
+ if len(ws_names_str) == 0:
+ return False, 'No workspace is found for experiment %d.' % exp_number
+
+ # Remove last ','
+ ws_names_str = ws_names_str[:-1]
+
+ # Group
+ api.GroupWorkspaces(InputWorkspaces=ws_names_str,
+ OutputWorkspace=group_name)
+
+ return
+
+ def merge_pts_in_scan(self, exp_no, scan_no, target_ws_name, target_frame):
+ """
+ Merge Pts in Scan
+ All the workspaces generated as internal results will be grouped
+ :param exp_no:
+ :param scan_no:
+ :param target_ws_name:
+ :param target_frame:
+ :return: (merged workspace name, workspace group name)
+ """
+ # Check
+ if exp_no is None:
+ exp_no = self._expNumber
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+ assert isinstance(target_frame, str)
+ assert isinstance(target_ws_name, str)
+
+ ub_matrix_1d = None
+
+ # Target frame
+ if target_frame.lower().startswith('hkl'):
+ target_frame = 'hkl'
+ ub_matrix_1d = self._myUBMatrixDict[self._expNumber].reshape(9,)
+ elif target_frame.lower().startswith('q-sample'):
+ target_frame = 'qsample'
+
+ else:
+ raise RuntimeError('Target frame %s is not supported.' % target_frame)
+
+ # Process data and save
+ status, pt_num_list = self.get_pt_numbers(exp_no, scan_no, True)
+ if status is False:
+ err_msg = pt_num_list
+ return False, err_msg
+ else:
+ print '[DB] Number of Pts for Scan %d is %d' % (scan_no, len(pt_num_list))
+ print '[DB] Data directory: %s' % self._dataDir
+ max_pts = 0
+ ws_names_str = ''
+ ws_names_to_group = ''
+
+ for pt in pt_num_list:
+ try:
+ self.download_spice_xml_file(scan_no, pt, overwrite=False)
+ api.CollectHB3AExperimentInfo(ExperimentNumber=exp_no, ScanList='%d' % scan_no, PtLists='-1,%d' % pt,
+ DataDirectory=self._dataDir,
+ GenerateVirtualInstrument=False,
+ OutputWorkspace='ScanPtInfo_Exp%d_Scan%d' % (exp_no, scan_no),
+ DetectorTableWorkspace='MockDetTable')
+
+ out_q_name = 'HB3A_Exp%d_Scan%d_Pt%d_MD' % (exp_no, scan_no, pt)
+ api.ConvertCWSDExpToMomentum(InputWorkspace='ScanPtInfo_Exp406_Scan%d' % scan_no,
+ CreateVirtualInstrument=False,
+ OutputWorkspace=out_q_name,
+ Directory=self._dataDir)
+
+ ws_names_to_group += out_q_name + ','
+ if target_frame == 'hkl':
+ out_hkl_name = 'HKL_Scan%d_Pt%d' % (scan_no, pt)
+ api.ConvertCWSDMDtoHKL(InputWorkspace=out_q_name,
+ UBMatrix=ub_matrix_1d,
+ OutputWorkspace=out_hkl_name)
+ ws_names_str += out_hkl_name + ','
+ ws_names_to_group += out_hkl_name + ','
+ else:
+ ws_names_str += out_q_name + ','
+
+ except RuntimeError as e:
+ print '[Error] Reducing scan %d pt %d due to %s' % (scan_no, pt, str(e))
+ continue
+
+ else:
+ max_pts = pt
+ # END-FOR
+
+ # Merge
+ if target_frame == 'qsample':
+ out_ws_name = target_ws_name + '_QSample'
+ elif target_frame == 'hkl':
+ out_ws_name = target_ws_name + '_HKL'
+ else:
+ raise RuntimeError('Impossible to have target frame %s' % target_frame)
+
+ ws_names_str = ws_names_str[:-1]
+ api.MergeMD(InputWorkspaces=ws_names_str, OutputWorkspace=out_ws_name, SplitInto=max_pts)
+
+ # Group workspaces
+ group_name = 'Group_Exp406_Scan%d' % scan_no
+ api.GroupWorkspaces(InputWorkspaces=ws_names_to_group, OutputWorkspace=group_name)
+ spice_table_name = get_spice_table_name(exp_no, scan_no)
+ api.GroupWorkspaces(InputWorkspaces='%s,%s' % (group_name, spice_table_name), OutputWorkspace=group_name)
+
+ ret_tup = out_ws_name, group_name
+
+ return ret_tup
+
+ def set_server_url(self, server_url):
+ """
+ Set URL for server to download the data
+ :param server_url:
+ :return:
+ """
+ # Server URL must end with '/'
+ self._myServerURL = str(server_url)
+ if self._myServerURL.endswith('/') is False:
+ self._myServerURL += '/'
+
+ # Test URL valid or not
+ is_url_good = False
+ error_message = None
+ try:
+ result = urllib2.urlopen(self._myServerURL)
+ except urllib2.HTTPError, err:
+ error_message = str(err.code)
+ except urllib2.URLError, err:
+ error_message = str(err.args)
+ else:
+ is_url_good = True
+ result.close()
+
+ if error_message is None:
+ error_message = ''
+ else:
+ error_message = 'Unable to open data server URL: %s due to %s.' % (server_url, error_message)
+
+ return is_url_good, error_message
+
+ def setWebAccessMode(self, mode):
+ """
+ Set data access mode form server
+ :param mode:
+ :return:
+ """
+ if isinstance(mode, str) is False:
+ raise RuntimeError('Input mode is not string')
+
+ if mode == 'cache':
+ self._cacheDataOnly = True
+ elif mode == 'download':
+ self._cacheDataOnly = False
+
+ return
+
+ def set_local_data_dir(self, local_dir):
+ """
+ Set local data storage
+ :param local_dir:
+ :return:
+ """
+ # Get absolute path
+ if os.path.isabs(local_dir) is False:
+ # Input is relative path to current working directory
+ cwd = os.getcwd()
+ local_dir = os.path.join(cwd, local_dir)
+
+ # Create cache directory if necessary
+ if os.path.exists(local_dir) is False:
+ try:
+ os.mkdir(local_dir)
+ except OSError as os_err:
+ return False, str(os_err)
+
+ # Check whether the target is writable
+ if os.access(local_dir, os.W_OK) is False:
+ return False, 'Specified local data directory %s is not writable.' % local_dir
+
+ # Successful
+ self._dataDir = local_dir
+
+ return True, ''
+
+ def set_ub_matrix(self, exp_number, ub_matrix):
+ """
+ Set up UB matrix to _UBMatrix dictionary
+ :param exp_number:
+ :param ub_matrix:
+ :return:
+ """
+ # Check
+ if exp_number is None:
+ exp_number = self._expNumber
+
+ assert isinstance(exp_number, int)
+ assert isinstance(ub_matrix, numpy.ndarray)
+ assert ub_matrix.shape == (3, 3)
+
+ # Set up
+ self._myUBMatrixDict[exp_number] = ub_matrix
+
+ def set_working_directory(self, work_dir):
+ """
+ Set up the directory for working result
+ :return: (boolean, string)
+ """
+ if os.path.exists(work_dir) is False:
+ try:
+ os.mkdir(work_dir)
+ except OSError as os_err:
+ return False, 'Unable to create working directory %s due to %s.' % (work_dir, str(os_err))
+ elif os.access(work_dir, os.W_OK) is False:
+ return False, 'User specified working directory %s is not writable.' % work_dir
+
+ self._workDir = work_dir
+
+ return True, ''
+
+ def set_instrument_name(self, instrument_name):
+ """
+ Set instrument name
+ :param instrument_name:
+ :return:
+ """
+ # Check
+ if isinstance(instrument_name, str) is False:
+ return False, 'Input instrument name is not a string but of type %s.' % str(type(instrument_name))
+ if len(instrument_name) == 0:
+ return False, 'Input instrument name is an empty string.'
+
+ self._instrumentName = instrument_name
+
+ return True, ''
+
+ def set_exp_number(self, exp_number):
+ """ Add experiment number
+ :param exp_number:
+ :return:
+ """
+ assert isinstance(exp_number, int)
+ self._expNumber = exp_number
+
+ return True
+
+ def set_hkl_to_peak(self, exp_number, scan_number, pt_number):
+ """
+ Get HKL as _h, _k, _l from MDEventWorkspace. It is for HB3A only
+ :return:
+ """
+ status, peak_info = self.get_peak_info(exp_number, scan_number, pt_number)
+ if status is False:
+ err_msg = peak_info
+ return False, err_msg
+
+ md_ws = self._myPtMDDict[(exp_number, scan_number, pt_number)]
+ assert md_ws.getNumExperimentInfo() == 1
+ exp_info = md_ws.getExperimentInfo(0)
+
+ try:
+ m_h = float(exp_info.run().getProperty('_h').value)
+ m_k = float(exp_info.run().getProperty('_k').value)
+ m_l = float(exp_info.run().getProperty('_l').value)
+ except RuntimeError as error:
+ return False, 'Unable to retrieve HKL due to %s.' % (str(error))
+
+ peak_ws = peak_info.get_peak_workspace()
+ peak = peak_ws.getPeak(0)
+ peak.setHKL(m_h, m_k, m_l)
+
+ return True, (m_h, m_k, m_l)
+
+ def _add_raw_workspace(self, exp_no, scan_no, pt_no, raw_ws):
+ """ Add raw Pt.'s workspace
+ :param exp_no:
+ :param scan_no:
+ :param pt_no:
+ :param raw_ws: workspace or name of the workspace
+ :return: None
+ """
+ # Check
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+ assert isinstance(pt_no, int)
+
+ if isinstance(raw_ws, str):
+ # Given by name
+ matrix_ws = AnalysisDataService.retrieve(raw_ws)
+ else:
+ matrix_ws = raw_ws
+ assert isinstance(matrix_ws, mantid.dataobjects.Workspace2D)
+
+ self._myRawDataWSDict[(exp_no, scan_no, pt_no)] = matrix_ws
+
+ return
+
+ def _add_md_workspace(self, exp_no, scan_no, pt_no, md_ws):
+ """
+ Add MD workspace to storage
+ :param exp_no:
+ :param scan_no:
+ :param pt_no:
+ :param md_ws:
+ :return:
+ """
+ # Check input
+ print '[DB] Type of md_ws is %s.' % str(type(md_ws))
+ assert isinstance(md_ws, mantid.dataobjects.MDEventWorkspace)
+
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+ assert isinstance(pt_no)
+
+ self._myPtMDDict[(exp_no, scan_no, pt_no)] = md_ws
+
+ return
+
+ def _add_ub_peak_ws(self, exp_number, scan_number, pt_number, peak_ws):
+ """
+ Add peak workspace for UB matrix
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :param peak_ws:
+ :return:
+ """
+ # Check
+ assert isinstance(peak_ws, mantid.dataobjects.PeaksWorkspace)
+
+ assert isinstance(exp_number, int)
+ assert isinstance(scan_number, int)
+ assert isinstance(pt_number, int)
+
+ # Add
+ self._myUBPeakWSDict[(exp_number, scan_number, pt_number)] = peak_ws
+
+ return
+
+ def _add_spice_workspace(self, exp_no, scan_no, spice_table_ws):
+ """
+ """
+ assert isinstance(exp_no, int)
+ assert isinstance(scan_no, int)
+ assert isinstance(spice_table_ws, mantid.dataobjects.TableWorkspace)
+ self._mySpiceTableDict[(exp_no, scan_no)] = spice_table_ws
+
+ return
+
+ def _get_spice_workspace(self, exp_no, scan_no):
+ """ Get SPICE's scan table workspace
+ :param exp_no:
+ :param scan_no:
+ :return: Table workspace or None
+ """
+ try:
+ ws = self._mySpiceTableDict[(exp_no, scan_no)]
+ except KeyError:
+ print '[DB] Keys to SPICE TABLE: %s' % str(self._mySpiceTableDict.keys())
+ return None
+
+ return ws
+
+ def get_raw_data_workspace(self, exp_no, scan_no, pt_no):
+ """ Get raw workspace
+ """
+ try:
+ ws = self._myRawDataWSDict[(exp_no, scan_no, pt_no)]
+ assert isinstance(ws, mantid.dataobjects.Workspace2D)
+ except KeyError:
+ return None
+
+ return ws
+
+ def _get_pt_list_from_spice_table(self, spice_table_ws):
+ """
+ Get list of Pt. from a SPICE table workspace
+ :param spice_table_ws: SPICE table workspace
+ :return: list of Pt.
+ """
+ numrows = spice_table_ws.rowCount()
+ ptlist = []
+ for irow in xrange(numrows):
+ ptno = int(spice_table_ws.cell(irow, 0))
+ ptlist.append(ptno)
+
+ return ptlist
+
+
+def get_spice_file_name(exp_number, scan_number):
+ """
+ Get standard HB3A SPICE file name from experiment number and scan number
+ :param exp_number:
+ :param scan_num:
+ :return:
+ """
+ file_name = 'HB3A_exp%04d_scan%04d.dat' % (exp_number, scan_number)
+
+ return file_name
+
+
+def get_spice_table_name(exp_number, scan_number):
+ """ Form the name of the table workspace for SPICE
+ :param exp_number:
+ :param scan_number:
+ :return:
+ """
+ table_name = 'HB3A_%03d_%04d_SpiceTable' % (exp_number, scan_number)
+
+ return table_name
+
+
+def get_raw_data_workspace_name(exp_number, scan_number, pt_number):
+ """ Form the name of the matrix workspace to which raw pt. XML file is loaded
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ ws_name = 'HB3A_exp%d_scan%04d_%04d' % (exp_number, scan_number, pt_number)
+
+ return ws_name
+
+
+def get_pt_info_ws_name(exp_number, scan_number):
+ """
+ Information table workspace'name from CollectHB3AInfo
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ ws_name = 'ScanPtInfo_Exp%d_Scan%d' % (exp_number, scan_number)
+
+ return ws_name
+
+
+def get_single_pt_peak_ws_name(exp_number, scan_number, pt_number):
+ """
+ Form the name of the peak workspace
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ ws_name = 'Peak_Exp%d_Scan%d_Pt%d' % (exp_number, scan_number, pt_number)
+
+ return ws_name
+
+
+def get_single_pt_md_name(exp_number, scan_number, pt_number):
+ """ Form the name of the MDEvnetWorkspace for a single Pt. measurement
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ ws_name = 'HB3A_Exp%d_Scan%d_Pt%d_MD' % (exp_number, scan_number, pt_number)
+
+ return ws_name
+
+
+def get_virtual_instrument_table_name(exp_number, scan_number, pt_number):
+ """
+ Generate the name of the table workspace containing the virtual instrument information
+ :param exp_number:
+ :param scan_number:
+ :param pt_number:
+ :return:
+ """
+ ws_name = 'VirtualInstrument_Exp%d_Scan%d_Pt%d_Table' % (exp_number, scan_number, pt_number)
+
+ return ws_name
diff --git a/scripts/HFIR_4Circle_Reduction/reduce4circleGUI.py b/scripts/HFIR_4Circle_Reduction/reduce4circleGUI.py
new file mode 100644
index 0000000000000000000000000000000000000000..7009c1e8b8ec763ec515120f212242332cf5e2b9
--- /dev/null
+++ b/scripts/HFIR_4Circle_Reduction/reduce4circleGUI.py
@@ -0,0 +1,1092 @@
+#pylint: disable=invalid-name,relative-import,W0611,R0921,R0902,R0904,R0921,C0302
+################################################################################
+#
+# MainWindow application for reducing HFIR 4-circle
+#
+################################################################################
+import os
+import math
+import csv
+import time
+
+from PyQt4 import QtCore, QtGui
+
+import reduce4circleControl as r4c
+import guiutility as gutil
+import fourcircle_utility as fcutil
+
+try:
+ _fromUtf8 = QtCore.QString.fromUtf8
+except AttributeError:
+ def _fromUtf8(s):
+ return s
+
+# import line for the UI python class
+from ui_MainWindow import Ui_MainWindow
+
+
+class MainWindow(QtGui.QMainWindow):
+ """ Class of Main Window (top)
+ """
+ def __init__(self, parent=None):
+ """ Initialization and set up
+ """
+ # Base class
+ QtGui.QMainWindow.__init__(self,parent)
+
+ # UI Window (from Qt Designer)
+ self.ui = Ui_MainWindow()
+ self.ui.setupUi(self)
+
+ # Mantid configuration
+ self._instrument = str(self.ui.comboBox_instrument.currentText())
+ # config = ConfigService.Instance()
+ # self._instrument = config["default.instrument"]
+
+ # Event handling definitions
+ # Top
+ self.connect(self.ui.pushButton_setExp, QtCore.SIGNAL('clicked()'),
+ self.do_set_experiment)
+
+ # Tab 'Data Access'
+ self.connect(self.ui.pushButton_applySetup, QtCore.SIGNAL('clicked()'),
+ self.do_apply_setup)
+ self.connect(self.ui.pushButton_browseLocalDataDir, QtCore.SIGNAL('clicked()'),
+ self.do_browse_local_spice_data)
+ self.connect(self.ui.pushButton_testURLs, QtCore.SIGNAL('clicked()'),
+ self.do_test_url)
+ self.connect(self.ui.pushButton_ListScans, QtCore.SIGNAL('clicked()'),
+ self.do_list_scans)
+ self.connect(self.ui.pushButton_downloadExpData, QtCore.SIGNAL('clicked()'),
+ self.do_download_spice_data)
+ self.connect(self.ui.comboBox_mode, QtCore.SIGNAL('currentIndexChanged(int)'),
+ self.change_data_access_mode)
+
+ # Tab 'View Raw Data'
+ self.connect(self.ui.pushButton_setScanInfo, QtCore.SIGNAL('clicked()'),
+ self.do_load_scan_info)
+ self.connect(self.ui.pushButton_plotRawPt, QtCore.SIGNAL('clicked()'),
+ self.do_plot_pt_raw)
+ self.connect(self.ui.pushButton_prevPtNumber, QtCore.SIGNAL('clicked()'),
+ self.do_plot_prev_pt_raw)
+ self.connect(self.ui.pushButton_nextPtNumber, QtCore.SIGNAL('clicked()'),
+ self.do_plot_next_pt_raw)
+ self.connect(self.ui.pushButton_showPtList, QtCore.SIGNAL('clicked()'),
+ self.show_scan_pt_list)
+ self.connect(self.ui.pushButton_usePt4UB, QtCore.SIGNAL('clicked()'),
+ self.do_add_peak_to_find)
+
+ # Tab 'calculate ub matrix'
+ self.connect(self.ui.pushButton_findPeak, QtCore.SIGNAL('clicked()'),
+ self.do_find_peak)
+ self.connect(self.ui.pushButton_addPeakToCalUB, QtCore.SIGNAL('clicked()'),
+ self.do_add_ub_peak)
+ self.connect(self.ui.pushButton_calUB, QtCore.SIGNAL('clicked()'),
+ self.do_cal_ub_matrix)
+ self.connect(self.ui.pushButton_acceptUB, QtCore.SIGNAL('clicked()'),
+ self.doAcceptCalUB)
+ self.connect(self.ui.pushButton_indexUBPeaks, QtCore.SIGNAL('clicked()'),
+ self.do_index_ub_peaks)
+ self.connect(self.ui.pushButton_deleteUBPeak, QtCore.SIGNAL('clicked()'),
+ self.do_del_ub_peaks)
+ self.connect(self.ui.pushButton_clearUBPeakTable, QtCore.SIGNAL('clicked()'),
+ self.do_clear_ub_peaks)
+ self.connect(self.ui.pushButton_resetPeakHKLs, QtCore.SIGNAL('clicked()'),
+ self.do_reset_ub_peaks_hkl)
+
+ # Tab 'Slice View'
+ self.connect(self.ui.pushButton_setUBSliceView, QtCore.SIGNAL('clicked()'),
+ self.do_set_ub_sv)
+ self.connect(self.ui.pushButton_process4SliceView, QtCore.SIGNAL('clicked()'),
+ self.do_merge_scans)
+
+ # Tab 'Advanced'
+ self.connect(self.ui.pushButton_useDefaultDir, QtCore.SIGNAL('clicked()'),
+ self.do_setup_dir_default)
+ self.connect(self.ui.pushButton_browseLocalCache, QtCore.SIGNAL('clicked()'),
+ self.do_browse_local_cache_dir)
+ self.connect(self.ui.pushButton_browseWorkDir, QtCore.SIGNAL('clicked()'),
+ self.do_browse_working_dir)
+ self.connect(self.ui.comboBox_instrument, QtCore.SIGNAL('currentIndexChanged(int)'),
+ self.change_instrument_name)
+
+ # Refine UB matrix
+ self.connect(self.ui.pushButton_addToRefine, QtCore.SIGNAL('clicked()'),
+ self.do_refine_ub)
+ self.connect(self.ui.pushButton_addAllRefineUB, QtCore.SIGNAL('clicked()'),
+ self.do_refine_ub)
+ self.connect(self.ui.pushButton_acceptRefinedUB, QtCore.SIGNAL('clicked()'),
+ self.do_refine_ub)
+ self.connect(self.ui.pushButton_resetRefinedUB, QtCore.SIGNAL('clicked()'),
+ self.do_refine_ub)
+
+ # Tab 'Integrate Peaks'
+ self.connect(self.ui.pushButton_integratePeak, QtCore.SIGNAL('clicked()'),
+ self.do_integrate_peaks)
+
+ # Menu
+ self.connect(self.ui.actionExit, QtCore.SIGNAL('triggered()'),
+ self.menu_quit)
+
+ self.connect(self.ui.actionSave_Session, QtCore.SIGNAL('triggered()'),
+ self.save_current_session)
+ self.connect(self.ui.actionLoad_Session, QtCore.SIGNAL('triggered()'),
+ self.load_session)
+
+ # Event handling for tab 'refine ub matrix'
+ self.connect(self.ui.pushButton_addToRefine, QtCore.SIGNAL('clicked()'),
+ self.doAddScanPtToRefineUB)
+
+ # Validator ... (NEXT)
+
+ # Declaration of class variable
+ # some configuration
+ self._homeSrcDir = os.getcwd()
+ self._homeDir = os.getcwd()
+
+ # Control
+ self._myControl = r4c.CWSCDReductionControl(self._instrument)
+ self._allowDownload = True
+ self._dataAccessMode = 'Download'
+
+ # Initial setup
+ self.ui.tabWidget.setCurrentIndex(0)
+ self.ui.tabWidget.setTabEnabled(4, False)
+ self.ui.tabWidget.setTabEnabled(5, False)
+ self._init_ub_table()
+ self.ui.radioButton_ubFromTab1.setChecked(True)
+
+ # Tab 'Access'
+ self.ui.lineEdit_url.setText('http://neutron.ornl.gov/user_data/hb3a/')
+ self.ui.comboBox_mode.setCurrentIndex(0)
+ self.ui.lineEdit_localSpiceDir.setEnabled(True)
+ self.ui.pushButton_browseLocalDataDir.setEnabled(True)
+
+ return
+
+ def do_integrate_peaks(self):
+ """
+
+ :return:
+ """
+ raise RuntimeError('ASAP')
+
+ def do_refine_ub(self):
+ """
+
+ :return:
+ """
+ raise RuntimeError('Next Release')
+
+ def _init_ub_table(self):
+ """ DOC
+ :return:
+ """
+ # UB-peak table
+ # NOTE: have to call this because pyqt set column and row to 0 after __init__
+ # thus a 2-step initialization has to been adopted
+ self.ui.tableWidget_peaksCalUB.setup()
+
+ self.ui.tableWidget_ubMatrix.setup()
+ self.ui.tableWidget_ubSiceView.setup()
+ self.ui.tableWidget_refinedUB.setup()
+
+ self.ui.tableWidget_sliceViewProgress.setup()
+
+ return
+
+ def change_data_access_mode(self):
+ """ Change data access mode between downloading from server and local
+ Event handling methods
+ :return:
+ """
+ new_mode = str(self.ui.comboBox_mode.currentText())
+ self._dataAccessMode = new_mode
+
+ if new_mode.startswith('Local') is True:
+ self.ui.lineEdit_localSpiceDir.setEnabled(True)
+ self.ui.pushButton_browseLocalDataDir.setEnabled(True)
+ self.ui.lineEdit_url.setEnabled(False)
+ self.ui.lineEdit_localSrcDir.setEnabled(False)
+ self.ui.pushButton_browseLocalCache.setEnabled(False)
+ self._allowDownload = False
+ else:
+ self.ui.lineEdit_localSpiceDir.setEnabled(False)
+ self.ui.pushButton_browseLocalDataDir.setEnabled(False)
+ self.ui.lineEdit_url.setEnabled(True)
+ self.ui.lineEdit_localSrcDir.setEnabled(True)
+ self.ui.pushButton_browseLocalCache.setEnabled(True)
+ self._allowDownload = True
+
+ return
+
+ def change_instrument_name(self):
+ """ Handing the event as the instrument name is changed
+ :return:
+ """
+ new_instrument = str(self.ui.comboBox_instrument.currentText())
+ self.pop_one_button_dialog('Change of instrument during data processing is dangerous.')
+ status, error_message = self._myControl.set_instrument_name(new_instrument)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+
+ return
+
+ def do_add_ub_peak(self):
+ """ Add current to ub peaks
+ :return:
+ """
+ # Add peak
+ status, int_list = gutil.parse_integers_editors([self.ui.lineEdit_exp,
+ self.ui.lineEdit_scanNumber,
+ self.ui.lineEdit_ptNumber])
+ if status is False:
+ self.pop_one_button_dialog(int_list)
+ exp_no, scan_no, pt_no = int_list
+
+ # Get HKL from GUI
+ status, float_list = gutil.parse_float_editors([self.ui.lineEdit_H,
+ self.ui.lineEdit_K,
+ self.ui.lineEdit_L])
+ if status is False:
+ err_msg = float_list
+ self.pop_one_button_dialog(err_msg)
+ return
+ h, k, l = float_list
+
+ status, peak_info_obj = self._myControl.get_peak_info(exp_no, scan_no, pt_no)
+ if status is False:
+ error_message = peak_info_obj
+ self.pop_one_button_dialog(error_message)
+ return
+ assert isinstance(peak_info_obj, r4c.PeakInfo)
+
+ if self.ui.checkBox_roundHKLInt.isChecked():
+ h = math.copysign(1, h)*int(abs(h)+0.5)
+ k = math.copysign(1, k)*int(abs(k)+0.5)
+ l = math.copysign(1, l)*int(abs(l)+0.5)
+ peak_info_obj.set_user_hkl(h, k, l)
+ self.set_ub_peak_table(peak_info_obj)
+
+ # Clear
+ self.ui.lineEdit_scanNumber.setText('')
+ self.ui.lineEdit_ptNumber.setText('')
+
+ self.ui.lineEdit_sampleQx.setText('')
+ self.ui.lineEdit_sampleQy.setText('')
+ self.ui.lineEdit_sampleQz.setText('')
+
+ self.ui.lineEdit_H.setText('')
+ self.ui.lineEdit_K.setText('')
+ self.ui.lineEdit_L.setText('')
+
+ return
+
+ def doAcceptCalUB(self):
+ """ Accept the calculated UB matrix
+ """
+ raise RuntimeError('ASAP')
+ return
+
+ def doAddScanPtToRefineUB(self):
+ """ Add scan/pt numbers to the list of data points for refining ub matrix
+
+ And the added scan number and pt numbers will be reflected in the (left sidebar)
+
+ """
+ raise RuntimeError("ASAP")
+
+ def do_add_peak_to_find(self):
+ """
+ Add the scan/pt to the next
+ :return:
+ """
+ scan_no = self.ui.lineEdit_run.text()
+ pt_no = self.ui.lineEdit_rawDataPtNo.text()
+
+ self.ui.lineEdit_scanNumber.setText(scan_no)
+ self.ui.lineEdit_ptNumber.setText(pt_no)
+
+ self.ui.tabWidget.setCurrentIndex(2)
+
+ def do_browse_local_cache_dir(self):
+ """ Browse local cache directory
+ :return:
+ """
+ local_cache_dir = str(QtGui.QFileDialog.getExistingDirectory(self,
+ 'Get Local Cache Directory',
+ self._homeSrcDir))
+
+ # Set local directory to control
+ status, error_message = self._myControl.set_local_data_dir(local_cache_dir)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ return
+
+ # Synchronize to local data/spice directory and local cache directory
+ if str(self.ui.lineEdit_localSpiceDir.text()) != '':
+ prev_dir = str(self.ui.lineEdit_localSrcDir.text())
+ self.pop_one_button_dialog('Local data directory was set up as %s' %
+ prev_dir)
+ self.ui.lineEdit_localSrcDir.setText(local_cache_dir)
+ self.ui.lineEdit_localSpiceDir.setText(local_cache_dir)
+
+ return
+
+ def do_browse_local_spice_data(self):
+ """ Browse local source SPICE data directory
+ """
+ src_spice_dir = str(QtGui.QFileDialog.getExistingDirectory(self, 'Get Directory',
+ self._homeSrcDir))
+ # Set local data directory to controller
+ status, error_message = self._myControl.set_local_data_dir(src_spice_dir)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ return
+
+ self._homeSrcDir = src_spice_dir
+ self.ui.lineEdit_localSpiceDir.setText(src_spice_dir)
+
+ return
+
+ def do_browse_working_dir(self):
+ """
+ Browse and set up working directory
+ :return:
+ """
+ work_dir = str(QtGui.QFileDialog.getExistingDirectory(self, 'Get Working Directory', self._homeDir))
+ status, error_message = self._myControl.set_working_directory(work_dir)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ else:
+ self.ui.lineEdit_workDir.setText(work_dir)
+
+ return
+
+ def do_cal_ub_matrix(self):
+ """ Calculate UB matrix by 2 or 3 reflections
+ """
+ # Get reflections
+ num_rows = self.ui.tableWidget_peaksCalUB.rowCount()
+ peak_info_list = list()
+ status, exp_number = gutil.parse_integers_editors(self.ui.lineEdit_exp)
+ for i_row in xrange(num_rows):
+ if self.ui.tableWidget_peaksCalUB.is_selected(i_row) is True:
+ scan_num, pt_num = self.ui.tableWidget_peaksCalUB.get_exp_info(i_row)
+ status, peak_info = self._myControl.get_peak_info(exp_number, scan_num, pt_num)
+ peak_info.set_peak_ws_hkl_from_user()
+ if status is False:
+ self.pop_one_button_dialog(peak_info)
+ return
+ assert isinstance(peak_info, r4c.PeakInfo)
+ peak_info_list.append(peak_info)
+ # END-FOR
+
+ # Get lattice
+ status, ret_obj = self._get_lattice_parameters()
+ if status is True:
+ a, b, c, alpha, beta, gamma = ret_obj
+ else:
+ err_msg = ret_obj
+ self.pop_one_button_dialog(err_msg)
+ return
+
+ # Calculate UB matrix
+ status, ub_matrix = self._myControl.calculate_ub_matrix(peak_info_list, a, b, c,
+ alpha, beta, gamma)
+
+ # Deal with result
+ if status is True:
+ self._show_ub_matrix(ub_matrix)
+ else:
+ err_msg = ub_matrix
+ self.pop_one_button_dialog(err_msg)
+
+ return
+
+ def do_clear_ub_peaks(self):
+ """
+ Clear all peaks in UB-Peak table
+ :return:
+ """
+ self.ui.tableWidget_peaksCalUB.clear()
+
+ return
+
+ def do_del_ub_peaks(self):
+ """
+ Delete a peak in UB-Peak table
+ :return:
+ """
+ # Find out the lines to get deleted
+ row_num_list = self.ui.tableWidget_peaksCalUB.get_selected_rows()
+ print '[DB] Row %s are selected' % str(row_num_list)
+
+ # Delete
+ self.ui.tableWidget_peaksCalUB.delete_rows(row_num_list)
+
+ return
+
+ def do_download_spice_data(self):
+ """ Download SPICE data
+ :return:
+ """
+ # Check scans to download
+ scan_list_str = str(self.ui.lineEdit_downloadScans.text())
+ if len(scan_list_str) > 0:
+ # user specifies scans to download
+ valid, scan_list = fcutil.parse_int_array(scan_list_str)
+ if valid is False:
+ error_message = scan_list
+ self.pop_one_button_dialog(error_message)
+ else:
+ # Get all scans
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp])
+ if status is False:
+ self.pop_one_button_dialog(ret_obj)
+ return
+ exp_no = ret_obj
+ assert isinstance(exp_no, int)
+ server_url = str(self.ui.lineEdit_url.text())
+ scan_list = fcutil.get_scans_list(server_url, exp_no, return_list=True)
+ self.pop_one_button_dialog('Going to download scans %s.' % str(scan_list))
+
+ # Check location
+ destination_dir = str(self.ui.lineEdit_localSrcDir.text())
+ status, error_message = self._myControl.set_local_data_dir(destination_dir)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ else:
+ self.pop_one_button_dialog('Spice files will be downloaded to %s.' % destination_dir)
+
+ # Set up myControl for downloading data
+ exp_no = int(self.ui.lineEdit_exp.text())
+ self._myControl.set_exp_number(exp_no)
+
+ server_url = str(self.ui.lineEdit_url.text())
+ status, error_message = self._myControl.set_server_url(server_url)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ return
+
+ # Download
+ self._myControl.download_data_set(scan_list)
+
+ return
+
+ def do_find_peak(self):
+ """ Find peak in a given scan/pt and record it
+ """
+ # Get experiment, scan and pt
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp,
+ self.ui.lineEdit_scanNumber,
+ self.ui.lineEdit_ptNumber])
+ if status is True:
+ exp_no, scan_no, pt_no = ret_obj
+ else:
+ self.pop_one_button_dialog(ret_obj)
+ return
+
+ # Find peak
+ status, err_msg = self._myControl.find_peak(exp_no, scan_no, pt_no)
+ if status is False:
+ self.pop_one_button_dialog(ret_obj)
+ return
+ if self.ui.checkBox_loadHKLfromFile.isChecked() is True:
+ # This is the first time that in the workflow to get HKL from MD workspace
+ status, err_msg = self._myControl.set_hkl_to_peak(exp_no, scan_no, pt_no)
+ if status is False:
+ self.pop_one_button_dialog('Unable to locate peak info due to %s.' % err_msg)
+
+ # Set up correct values to table tableWidget_peaksCalUB
+ self._myControl.add_peak_info(exp_no, scan_no, pt_no)
+ status, peak_info = self._myControl.get_peak_info(exp_no, scan_no, pt_no)
+ if status is False:
+ err_msg = peak_info
+ raise KeyError(err_msg)
+ assert isinstance(peak_info, r4c.PeakInfo)
+
+ # Set the HKL value from PeakInfo directly
+ # BAD PROGRAMMING! THERE ARE TOO MANY WAYS TO ACCESS STORED HKL
+ h, k, l = peak_info.get_peak_ws_hkl()
+ self.ui.lineEdit_H.setText('%.2f' % h)
+ self.ui.lineEdit_K.setText('%.2f' % k)
+ self.ui.lineEdit_L.setText('%.2f' % l)
+
+ q_sample = peak_info.getQSample()
+ self.ui.lineEdit_sampleQx.setText('%.5E' % q_sample[0])
+ self.ui.lineEdit_sampleQy.setText('%.5E' % q_sample[1])
+ self.ui.lineEdit_sampleQz.setText('%.5E' % q_sample[2])
+
+ # self.set_ub_peak_table(peak_info)
+
+ return
+
+ def do_index_ub_peaks(self):
+ """ Index the peaks in the UB matrix peak table
+ :return:
+ """
+ # Get UB matrix
+ ub_matrix = self.ui.tableWidget_ubMatrix.get_matrix()
+ print '[DB] Get UB matrix ', ub_matrix
+
+ # Do it for each peak
+ num_peaks = self.ui.tableWidget_peaksCalUB.rowCount()
+ err_msg = ''
+ for i_peak in xrange(num_peaks):
+ scan_no, pt_no = self.ui.tableWidget_peaksCalUB.get_exp_info(i_peak)
+ status, ret_obj = self._myControl.index_peak(ub_matrix, scan_number=scan_no,
+ pt_number=pt_no)
+ if status is True:
+ new_hkl = ret_obj[0]
+ error = ret_obj[1]
+ self.ui.tableWidget_peaksCalUB.set_hkl(i_peak, new_hkl, error)
+ else:
+ err_msg += ret_obj + '\n'
+ # END-FOR
+
+ if len(err_msg) > 0:
+ self.pop_one_button_dialog(err_msg)
+
+ return
+
+ def do_list_scans(self):
+ """ List all scans available
+ :return:
+ """
+ # Experiment number
+ exp_no = int(self.ui.lineEdit_exp.text())
+
+ access_mode = str(self.ui.comboBox_mode.currentText())
+ if access_mode == 'Local':
+ spice_dir = str(self.ui.lineEdit_localSpiceDir.text())
+ message = fcutil.get_scans_list_local_disk(spice_dir, exp_no)
+ else:
+ url = str(self.ui.lineEdit_url.text())
+ message = fcutil.get_scans_list(url, exp_no)
+
+ self.pop_one_button_dialog(message)
+
+ return
+
+ def do_load_scan_info(self):
+ """ Load SIICE's scan file
+ :return:
+ """
+ # Get scan number
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_run])
+ if status is True:
+ scan_no = ret_obj[0]
+ else:
+ err_msg = ret_obj
+ self.pop_one_button_dialog('Unable to get scan number in raw data tab due to %s.' % err_msg)
+ return
+
+ status, err_msg = self._myControl.load_spice_scan_file(exp_no=None, scan_no=scan_no)
+ if status is False:
+ self.pop_one_button_dialog(err_msg)
+
+ return
+
+ def do_plot_pt_raw(self):
+ """ Plot the Pt.
+ """
+ # Get measurement pt and the file number
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp,
+ self.ui.lineEdit_run,
+ self.ui.lineEdit_rawDataPtNo])
+ if status is True:
+ exp_no = ret_obj[0]
+ scan_no = ret_obj[1]
+ pt_no = ret_obj[2]
+ else:
+ self.pop_one_button_dialog(ret_obj)
+ return
+
+ # Call to plot 2D
+ self._plot_raw_xml_2d(exp_no, scan_no, pt_no)
+
+ return
+
+ def do_plot_prev_pt_raw(self):
+ """ Plot the Pt.
+ """
+ # Get measurement pt and the file number
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp,
+ self.ui.lineEdit_run,
+ self.ui.lineEdit_rawDataPtNo])
+ if status is True:
+ exp_no = ret_obj[0]
+ scan_no = ret_obj[1]
+ pt_no = ret_obj[2]
+ else:
+ self.pop_one_button_dialog(ret_obj)
+ return
+
+ # Previous one
+ pt_no -= 1
+ if pt_no <= 0:
+ self.pop_one_button_dialog('Pt. = 1 is the first one.')
+ return
+ else:
+ self.ui.lineEdit_rawDataPtNo.setText('%d' % pt_no)
+
+ # Plot
+ self._plot_raw_xml_2d(exp_no, scan_no, pt_no)
+
+ return
+
+ def do_plot_next_pt_raw(self):
+ """ Plot the Pt.
+ """
+ # Get measurement pt and the file number
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp,
+ self.ui.lineEdit_run,
+ self.ui.lineEdit_rawDataPtNo])
+ if status is True:
+ exp_no = ret_obj[0]
+ scan_no = ret_obj[1]
+ pt_no = ret_obj[2]
+ else:
+ self.pop_one_button_dialog(ret_obj)
+ return
+
+ # Previous one
+ pt_no += 1
+ # get last Pt. number
+ status, last_pt_no = self._myControl.get_pt_numbers(exp_no, scan_no)
+ if status is False:
+ error_message = last_pt_no
+ self.pop_one_button_dialog('Unable to access Spice table for scan %d. Reason" %s.' % (
+ scan_no, error_message))
+ if pt_no > last_pt_no:
+ self.pop_one_button_dialog('Pt. = %d is the last one of scan %d.' % (pt_no, scan_no))
+ return
+ else:
+ self.ui.lineEdit_rawDataPtNo.setText('%d' % pt_no)
+
+ # Plot
+ self._plot_raw_xml_2d(exp_no, scan_no, pt_no)
+
+ return
+
+ def do_merge_scans(self):
+ """ Process data for slicing view
+ :return:
+ """
+ # Get UB matrix
+ ub_matrix = self.ui.tableWidget_ubSiceView.get_matrix()
+ self._myControl.set_ub_matrix(exp_number=None, ub_matrix=ub_matrix)
+
+ # Get list of scans
+ scan_list = gutil.parse_integer_list(str(self.ui.lineEdit_listScansSliceView.text()))
+ if len(scan_list) == 0:
+ self.pop_one_button_dialog('Scan list is empty.')
+
+ # Set table
+ self.ui.tableWidget_sliceViewProgress.append_scans(scans=scan_list)
+
+ # Warning
+ self.pop_one_button_dialog('Data processing is long. Be patient!')
+
+ # Process
+ base_name = str(self.ui.lineEdit_baseMergeMDName.text())
+ scan_list.sort()
+ frame = str(self.ui.comboBox_mergeScanFrame.currentText())
+ for scan_no in scan_list:
+ # Download/check SPICE file
+ self._myControl.download_spice_file(None, scan_no, over_write=False)
+
+ # Get some information
+ status, pt_list = self._myControl.get_pt_numbers(None, scan_no, load_spice_scan=True)
+ if status is False:
+ err_msg = pt_list
+ self.pop_one_button_dialog('Failed to get Pt. number: %s' % err_msg)
+ return
+ else:
+ # Set information to table
+ err_msg = self.ui.tableWidget_sliceViewProgress.set_scan_pt(scan_no, pt_list)
+ if len(err_msg) > 0:
+ self.pop_one_button_dialog(err_msg)
+
+ out_ws_name = base_name + '%04d' % scan_no
+ self.ui.tableWidget_sliceViewProgress.set_scan_pt(scan_no, 'In Processing')
+ try:
+ ret_tup = self._myControl.merge_pts_in_scan(exp_no=None, scan_no=scan_no,
+ target_ws_name=out_ws_name,
+ target_frame=frame)
+ merge_status = 'Done'
+ merged_name = ret_tup[0]
+ group_name = ret_tup[1]
+ except RuntimeError as e:
+ merge_status = 'Failed. Reason: %s' % str(e)
+ merged_name = ''
+ group_name = ''
+ finally:
+ self.ui.tableWidget_sliceViewProgress.set_status(scan_no, merge_status)
+ self.ui.tableWidget_sliceViewProgress.set_ws_names(scan_no, merged_name, group_name)
+
+ # Sleep for a while
+ time.sleep(0.1)
+ # END-FOR
+
+ return
+
+ def do_reset_ub_peaks_hkl(self):
+ """
+ Reset user specified HKL value to peak table
+ :return:
+ """
+ num_rows = self.ui.tableWidget_peaksCalUB.rowCount()
+ for i_row in xrange(num_rows):
+ print '[DB] Update row %d' % (i_row)
+ scan, pt = self.ui.tableWidget_peaksCalUB.get_scan_pt(i_row)
+ status, peak_info = self._myControl.get_peak_info(None, scan, pt)
+ if status is False:
+ error_message = peak_info
+ raise RuntimeError(error_message)
+ h, k, l = peak_info.get_user_hkl()
+ self.ui.tableWidget_peaksCalUB.update_hkl(i_row, h, k, l)
+ # END-FOR
+
+ return
+
+ def do_set_experiment(self):
+ """ Set experiment
+ :return:
+ """
+ status, ret_obj = gutil.parse_integers_editors([self.ui.lineEdit_exp])
+ if status is True:
+ exp_number = ret_obj[0]
+ curr_exp_number = self._myControl.get_experiment()
+ if curr_exp_number is not None and exp_number != curr_exp_number:
+ self.pop_one_button_dialog('Changing experiment to %d. Clean previous experiment %d\'s result'
+ ' in Mantid manually.' % (exp_number, curr_exp_number))
+ self._myControl.set_exp_number(exp_number)
+ self.ui.lineEdit_exp.setStyleSheet('color: black')
+ else:
+ err_msg = ret_obj
+ self.pop_one_button_dialog('Unable to set experiment as %s' % err_msg)
+ self.ui.lineEdit_exp.setStyleSheet('color: red')
+
+ self.ui.tabWidget.setCurrentIndex(0)
+
+ return
+
+ def do_set_ub_sv(self):
+ """ Set UB matrix in Slice view
+ :return:
+ """
+ if self.ui.radioButton_ubFromTab1.isChecked():
+ self.ui.tableWidget_ubSiceView.set_from_matrix(self.ui.tableWidget_ubMatrix.get_matrix())
+ elif self.ui.radioButton_ubFromTab3.isChecked():
+ self.ui.tableWidget_ubSiceView.set_from_matrix(self.ui.tableWidget_refinedUB.get_matrix())
+ elif self.ui.radioButton_ubFromList.isChecked():
+ status, ret_obj = gutil.parse_float_array(str(self.ui.plainTextEdit_ubInput.toPlainText()))
+ if status is False:
+ self.pop_one_button_dialog(ret_obj)
+ elif len(ret_obj) != 9:
+ self.pop_one_button_dialog('Requiring 9 floats for UB matrix. Only %d are given.' % len(ret_obj))
+ else:
+ self.ui.tableWidget_ubSiceView.set_from_list(ret_obj)
+ else:
+ self.pop_one_button_dialog('None is selected to set UB matrix.')
+
+ return
+
+ def do_setup_dir_default(self):
+ """
+ Set up default directory for storing data and working
+ :return:
+ """
+ home_dir = os.path.expanduser('~')
+
+ # Data cache directory
+ data_cache_dir = os.path.join(home_dir, 'Temp/HB3ATest')
+ self.ui.lineEdit_localSpiceDir.setText(data_cache_dir)
+ self.ui.lineEdit_localSrcDir.setText(data_cache_dir)
+
+ work_dir = os.path.join(data_cache_dir, 'Workspace')
+ self.ui.lineEdit_workDir.setText(work_dir)
+
+ return
+
+ def do_apply_setup(self):
+ """
+ Apply set up ...
+ :return:
+ """
+ # Local data directory
+ local_data_dir = str(self.ui.lineEdit_localSpiceDir.text())
+ if os.path.exists(local_data_dir) is False:
+ try:
+ os.mkdir(local_data_dir)
+ except OSError as os_error:
+ self.pop_one_button_dialog('Unable to create local data directory %s due to %s.' % (
+ local_data_dir, str(os_error)))
+ self.ui.lineEdit_localSpiceDir.setStyleSheet("color: red;")
+ return
+ else:
+ self.ui.lineEdit_localSpiceDir.setStyleSheet("color: black;")
+ # END-IF
+
+ # Working directory
+ working_dir = str(self.ui.lineEdit_workDir.text())
+ if os.path.exists(working_dir) is False:
+ try:
+ os.mkdir(working_dir)
+ except OSError as os_error:
+ self.pop_one_button_dialog('Unable to create working directory %s due to %s.' % (
+ working_dir, str(os_error)))
+ self.ui.lineEdit_workDir.setStyleSheet("color: red;")
+ return
+ else:
+ self.ui.lineEdit_workDir.setStyleSheet("color: black;")
+ # END-IF
+
+ # Server URL
+ data_server = str(self.ui.lineEdit_url.text())
+ url_is_good = self.do_test_url()
+ if url_is_good is False:
+ self.ui.lineEdit_url.setStyleSheet("color: red;")
+ return
+ else:
+ self.ui.lineEdit_url.setStyleSheet("color: black;")
+
+ # Set to control
+ self._myControl.set_local_data_dir(local_data_dir)
+ self._myControl.set_working_directory(working_dir)
+ self._myControl.set_server_url(data_server)
+
+ return
+
+ def do_test_url(self):
+ """ Test whether the root URL provided specified is good
+ """
+ url = str(self.ui.lineEdit_url.text())
+
+ url_is_good, err_msg = fcutil.check_url(url)
+ if url_is_good is True:
+ self.pop_one_button_dialog("URL %s is valid." % url)
+ else:
+ self.pop_one_button_dialog(err_msg)
+
+ return url_is_good
+
+ def pop_one_button_dialog(self, message):
+ """ Pop up a one-button dialog
+ :param message:
+ :return:
+ """
+ assert isinstance(message, str)
+ QtGui.QMessageBox.information(self, '4-circle Data Reduction', message)
+
+ return
+
+ def save_current_session(self, filename=None):
+ """ Save current session/value setup to
+ :return:
+ """
+ # Set up dictionary
+ save_dict = dict()
+
+ # Setup
+ save_dict['lineEdit_localSpiceDir'] = str(self.ui.lineEdit_localSpiceDir.text())
+ save_dict['lineEdit_url'] = str(self.ui.lineEdit_url.text())
+ save_dict['lineEdit_workDir']= str(self.ui.lineEdit_workDir.text())
+
+ # Experiment
+ save_dict['lineEdit_exp'] = str(self.ui.lineEdit_exp.text())
+ save_dict['lineEdit_scanNumber'] = self.ui.lineEdit_scanNumber.text()
+ save_dict['lineEdit_ptNumber'] = str(self.ui.lineEdit_ptNumber.text())
+
+ # Lattice
+ save_dict['lineEdit_a'] = str(self.ui.lineEdit_a.text())
+ save_dict['lineEdit_b'] = str(self.ui.lineEdit_b.text())
+ save_dict['lineEdit_c'] = str(self.ui.lineEdit_c.text())
+ save_dict['lineEdit_alpha'] = str(self.ui.lineEdit_alpha.text())
+ save_dict['lineEdit_beta'] = str(self.ui.lineEdit_beta.text())
+ save_dict['lineEdit_gamma'] = str(self.ui.lineEdit_gamma.text())
+
+ # Merge scan
+ save_dict['plainTextEdit_ubInput'] = str(self.ui.plainTextEdit_ubInput.toPlainText())
+ save_dict['lineEdit_listScansSliceView'] = str(self.ui.lineEdit_listScansSliceView.text())
+ save_dict['lineEdit_baseMergeMDName'] = str(self.ui.lineEdit_baseMergeMDName.text())
+
+ # Save to csv file
+ if filename is None:
+ filename = 'session_backup.csv'
+ ofile = open(filename, 'w')
+ writer = csv.writer(ofile)
+ for key, value in save_dict.items():
+ writer.writerow([key, value])
+ ofile.close()
+
+ return
+
+ def load_session(self, filename=None):
+ """
+ To load a session, i.e., read it back:
+ :param filename:
+ :return:
+ """
+ if filename is None:
+ filename = 'session_backup.csv'
+
+ in_file = open(filename, 'r')
+ reader = csv.reader(in_file)
+ my_dict = dict(x for x in reader)
+
+ # ...
+ for key, value in my_dict.items():
+ if key.startswith('lineEdit') is True:
+ self.ui.__getattribute__(key).setText(value)
+ elif key.startswith('plainText') is True:
+ self.ui.__getattribute__(key).setPlainText(value)
+ elif key.startswith('comboBox') is True:
+ self.ui.__getattribute__(key).setCurrentIndex(int(value))
+ else:
+ self.pop_one_button_dialog('Error! Widget name %s is not supported' % key)
+ # END-FOR
+
+ # ...
+ self._myControl.set_local_data_dir(str(self.ui.lineEdit_localSpiceDir.text()))
+
+ return
+
+ def menu_quit(self):
+ """
+
+ :return:
+ """
+ self.close()
+
+ def show_scan_pt_list(self):
+ """ Show the range of Pt. in a scan
+ :return:
+ """
+ # Get parameters
+ status, inp_list = gutil.parse_integers_editors([self.ui.lineEdit_exp, self.ui.lineEdit_run])
+ if status is False:
+ self.pop_one_button_dialog(inp_list)
+ return
+ else:
+ exp_no = inp_list[0]
+ scan_no = inp_list[1]
+
+ status, ret_obj = self._myControl.get_pt_numbers(exp_no, scan_no)
+
+ # Form message
+ if status is False:
+ # Failed to get Pt. list
+ error_message = ret_obj
+ self.pop_one_button_dialog(error_message)
+ else:
+ # Form message
+ pt_list = sorted(ret_obj)
+ num_pts = len(pt_list)
+ info = 'Exp %d Scan %d has %d Pt. ranging from %d to %d.\n' % (exp_no, scan_no, num_pts,
+ pt_list[0], pt_list[-1])
+ num_miss_pt = pt_list[-1] - pt_list[0] + 1 - num_pts
+ if num_miss_pt > 0:
+ info += 'There are %d Pt. skipped.\n' % num_miss_pt
+
+ self.pop_one_button_dialog(info)
+
+ return
+
+ def set_ub_peak_table(self, peakinfo):
+ """
+ DOC
+ :param peak_info:
+ :return:
+ """
+ assert isinstance(peakinfo, r4c.PeakInfo)
+
+ # Get data
+ exp_number, scan_number, pt_number = peakinfo.getExpInfo()
+ h, k, l = peakinfo.get_user_hkl()
+ q_sample = peakinfo.getQSample()
+ m1 = self._myControl.get_sample_log_value(exp_number, scan_number, pt_number, '_m1')
+
+ # Set to table
+ status, err_msg = self.ui.tableWidget_peaksCalUB.append_row(
+ [scan_number, pt_number, h, k, l, q_sample[0], q_sample[1], q_sample[2], False, m1, ''])
+ if status is False:
+ self.pop_one_button_dialog(err_msg)
+
+ return
+
+ def _get_lattice_parameters(self):
+ """
+ Get lattice parameters from GUI
+ :return: (Boolean, Object). True, 6-tuple as a, b, c, alpha, beta, gamm
+ False: error message
+ """
+ status, ret_list = gutil.parse_float_editors([self.ui.lineEdit_a,
+ self.ui.lineEdit_b,
+ self.ui.lineEdit_c,
+ self.ui.lineEdit_alpha,
+ self.ui.lineEdit_beta,
+ self.ui.lineEdit_gamma])
+ if status is False:
+ err_msg = ret_list
+ err_msg = 'Unable to parse unit cell due to %s' % err_msg
+ return False, err_msg
+
+ a, b, c, alpha, beta, gamma = ret_list
+
+ return True, (a, b, c, alpha, beta, gamma)
+
+ def _plot_raw_xml_2d(self, exp_no, scan_no, pt_no):
+ """ Plot raw workspace from XML file for a measurement/pt.
+ """
+ # Check and load SPICE table file
+ does_exist = self._myControl.does_spice_loaded(exp_no, scan_no)
+ if does_exist is False:
+ # Download data
+ status, error_message = self._myControl.download_spice_file(exp_no, scan_no, over_write=False)
+ if status is True:
+ status, error_message = self._myControl.load_spice_scan_file(exp_no, scan_no)
+ if status is False and self._allowDownload is False:
+ self.pop_one_button_dialog(error_message)
+ return
+ else:
+ self.pop_one_button_dialog(error_message)
+ return
+ # END-IF(does_exist)
+
+ # Load Data for Pt's xml file
+ does_exist = self._myControl.does_raw_loaded(exp_no, scan_no, pt_no)
+
+ if does_exist is False:
+ # Check whether needs to download
+ status, error_message = self._myControl.download_spice_xml_file(scan_no, pt_no, exp_no=exp_no)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ return
+ # Load SPICE xml file
+ status, error_message = self._myControl.load_spice_xml_file(exp_no, scan_no, pt_no)
+ if status is False:
+ self.pop_one_button_dialog(error_message)
+ return
+
+ # Convert a list of vector to 2D numpy array for imshow()
+ # Get data and plot
+ raw_det_data = self._myControl.get_raw_detector_counts(exp_no, scan_no, pt_no)
+ self.ui.graphicsView.clear_canvas()
+ self.ui.graphicsView.add_plot_2d(raw_det_data, x_min=0, x_max=256, y_min=0, y_max=256,
+ hold_prev_image=False)
+
+ return
+
+ def _show_ub_matrix(self, ubmatrix):
+ """ Show UB matrix
+ :param ubmatrix:
+ :return:
+ """
+ assert ubmatrix.shape == (3, 3)
+
+ self.ui.tableWidget_ubMatrix.set_from_matrix(ubmatrix)
+
+ return
diff --git a/scripts/SANS/SANSBatchMode.py b/scripts/SANS/SANSBatchMode.py
index 3419a9c6cd16d07aede08f6ca2a48e6918fb1d9b..38f01016a7b8b7744b9bdd942883cb8c133268b4 100644
--- a/scripts/SANS/SANSBatchMode.py
+++ b/scripts/SANS/SANSBatchMode.py
@@ -178,7 +178,8 @@ def BatchReduce(filename, format, plotresults=False, saveAlgs={'SaveRKH':'txt'},
original_settings = settings,
original_prop_man_settings = prop_man_settings)
except (RunTimeError, ValueError) as e:
- sanslog.warning("Error in Batchmode user files: Could not reset the specified user file %s. More info: %s" %(str(run['user_file']),str(e)))
+ sanslog.warning("Error in Batchmode user files: Could not reset the specified user file %s. More info: %s" %(
+ str(run['user_file']),str(e)))
local_settings = copy.deepcopy(ReductionSingleton().reference())
local_prop_man_settings = ReductionSingleton().settings.clone("TEMP_SETTINGS")