diff --git a/MantidPlot/CMakeLists.txt b/MantidPlot/CMakeLists.txt
index a0719b2f00e6ad5d5a25218df0fef0ec976dc52e..65264fb961d8a55d7002abafbf16989d30b2c94f 100644
--- a/MantidPlot/CMakeLists.txt
+++ b/MantidPlot/CMakeLists.txt
@@ -662,7 +662,6 @@ qt4_add_resources ( RES_FILES ${PROJECT_SOURCE_DIR}/images/MantidWidgets.qrc )
qt4_add_resources ( RES_FILES ${PROJECT_SOURCE_DIR}/images//fonts/fonts.qrc )
qt4_add_resources ( RES_FILES ${CMAKE_CURRENT_SOURCE_DIR}/icons/icons.qrc )
qt4_add_resources ( RES_FILES ${PROJECT_SOURCE_DIR}/qt/widgets/sliceviewer/icons/SliceViewerIcons.qrc )
-qt4_add_resources ( RES_FILES ${PROJECT_SOURCE_DIR}/qt/scientific_interfaces/icons/CustomInterfacesIcons.qrc )
qt4_add_resources ( RES_FILES ${PROJECT_SOURCE_DIR}/qt/paraview_ext/VatesSimpleGui/ViewWidgets/icons/ViewWidgetsIcons.qrc )
###########################################################################
diff --git a/qt/scientific_interfaces/CMakeLists.txt b/qt/scientific_interfaces/CMakeLists.txt
index f1789dec0f2f173ddbcbec3324d10323e61ce9fb..6ae324a481ee9a60b9cd4b8b7d894e89c34a6849 100644
--- a/qt/scientific_interfaces/CMakeLists.txt
+++ b/qt/scientific_interfaces/CMakeLists.txt
@@ -12,6 +12,7 @@ endif ( ${Boost_VERSION} GREATER 104799 AND ${qt_version} VERSION_GREATER 4.7.3
###########################################################################
add_subdirectory ( Muon )
add_subdirectory ( MultiDatasetFit )
+add_subdirectory ( ISISSANS )
###########################################################################
# Testing
diff --git a/qt/scientific_interfaces/ISISSANS/CMakeLists.txt b/qt/scientific_interfaces/ISISSANS/CMakeLists.txt
new file mode 100644
index 0000000000000000000000000000000000000000..2c1e77ae210ab2d46c115233eaf0fd1579c68742
--- /dev/null
+++ b/qt/scientific_interfaces/ISISSANS/CMakeLists.txt
@@ -0,0 +1,79 @@
+set ( SRC_FILES
+ SANSAddFiles.cpp
+ SANSBackgroundCorrectionSettings.cpp
+ SANSBackgroundCorrectionWidget.cpp
+ SANSConstants.cpp
+ SANSDiagnostics.cpp
+ SANSEventSlicing.cpp
+ SANSPlotSpecial.cpp
+ SANSRunWindow.cpp
+)
+
+# Include files aren't required, but this makes them appear in Visual Studio
+# IMPORTANT: Include files are required in the MOC_FILES set. Scroll down to find it.
+set ( INC_FILES
+ SANSAddFiles.h
+ SANSBackgroundCorrectionSettings.h
+ SANSBackgroundCorrectionWidget.h
+ SANSConstants.h
+ SANSDiagnostics.h
+ SANSEventSlicing.h
+ SANSPlotSpecial.h
+ SANSRunWindow.h
+)
+
+set ( MOC_FILES
+ SANSBackgroundCorrectionWidget.h
+ SANSAddFiles.h
+ SANSPlotSpecial.h
+ SANSRunWindow.h
+ SANSEventSlicing.h
+ SANSDiagnostics.h
+)
+
+set ( UI_FILES
+ SANSBackgroundCorrectionWidget.ui
+ SANSPlotSpecial.ui
+ SANSRunWindow.ui
+ SANSEventSlicing.ui
+)
+
+qt4_wrap_cpp ( MOCCED_FILES ${MOC_FILES} OPTIONS ${extra_options} )
+
+qt4_wrap_ui ( UI_HDRS ${UI_FILES} )
+include_directories ( ${CMAKE_CURRENT_BINARY_DIR} )
+
+set ( ALL_SRC ${SRC_FILES} ${MOCCED_FILES})
+
+# Use a precompiled header where they are supported
+enable_precompiled_headers( PrecompiledHeader.h ALL_SRC )
+add_library ( MantidScientificInterfacesISISSANS ${ALL_SRC} ${INC_FILES} ${UI_HDRS} )
+
+# Set the name of the generated library
+set_target_properties ( MantidScientificInterfacesISISSANS PROPERTIES COMPILE_DEFINITIONS IN_MANTIDQT_ISISSANS )
+if ( MSVC_IDE )
+# # Add to the 'ScientificInterfaces' group in VS
+ set_property ( TARGET MantidScientificInterfacesISISSANS PROPERTY FOLDER "ScientificInterfaces" )
+endif()
+
+if (OSX_VERSION VERSION_GREATER 10.8)
+ set_target_properties ( MantidScientificInterfacesISISSANS PROPERTIES INSTALL_RPATH "@loader_path/../../../Contents/MacOS")
+endif ()
+
+find_Package(Threads)
+
+target_link_libraries ( MantidScientificInterfacesISISSANS LINK_PRIVATE ${TCMALLOC_LIBRARIES_LINKTIME}
+ qtwidgetscommon
+ ${CORE_MANTIDLIBS}
+ ${QT_LIBRARIES}
+ ${QWT_LIBRARIES}
+ ${POCO_LIBRARIES}
+ ${Boost_LIBRARIES}
+ ${JSONCPP_LIBRARIES}
+ ${CMAKE_THREAD_LIBS_INIT})
+
+###########################################################################
+# Installation settings
+###########################################################################
+
+install ( TARGETS MantidScientificInterfacesISISSANS ${SYSTEM_PACKAGE_TARGET} DESTINATION ${PLUGINS_DIR}/qtplugins/mantid )
diff --git a/qt/scientific_interfaces/ISISSANS/DllConfig.h b/qt/scientific_interfaces/ISISSANS/DllConfig.h
new file mode 100644
index 0000000000000000000000000000000000000000..874f9c8e008356668b404dcf9ba21f7c80dca7ee
--- /dev/null
+++ b/qt/scientific_interfaces/ISISSANS/DllConfig.h
@@ -0,0 +1,39 @@
+#ifndef MANTIDQT_ISISSANS_DLLCONFIG_H_
+#define MANTIDQT_ISISSANS_DLLCONFIG_H_
+
+#include "MantidKernel/System.h"
+
+/*
+ This file contains the DLLExport/DLLImport linkage configuration for the
+ MantidQt CustomInterfaces library
+
+ Copyright © 2013 ISIS Rutherford Appleton Laboratory, NScD Oak Ridge
+ National Laboratory & European Spallation Source
+
+ This file is part of Mantid.
+
+ Mantid is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 3 of the License, or
+ (at your option) any later version.
+
+ Mantid is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+
+ File change history is stored at: <https://github.com/mantidproject/mantid>.
+ Code Documentation is available at: <http://doxygen.mantidproject.org>
+*/
+#ifdef IN_MANTIDQT_ISISSANS
+#define MANTIDQT_ISISSANS_DLL DLLExport
+#define EXTERN_MANTIDQT_ISISSANS
+#else
+#define MANTIDQT_ISISSANS_DLL DLLImport
+#define EXTERN_MANTIDQT_ISISSANS EXTERN_IMPORT
+#endif
+
+#endif // MANTIDQT_ISISSANS_DLLCONFIG_H_
diff --git a/qt/scientific_interfaces/ISISSANS/PrecompiledHeader.h b/qt/scientific_interfaces/ISISSANS/PrecompiledHeader.h
new file mode 100644
index 0000000000000000000000000000000000000000..adab264ffb1076c52ec2433ee7c922201dfaf489
--- /dev/null
+++ b/qt/scientific_interfaces/ISISSANS/PrecompiledHeader.h
@@ -0,0 +1,20 @@
+#ifndef MANTIDQT_CUSTOMINTERFACES_PRECOMPILEDHEADER_H_
+#define MANTIDQT_CUSTOMINTERFACES_PRECOMPILEDHEADER_H_
+
+// Mantid
+#include "MantidKernel/System.h"
+#include "MantidAPI/Algorithm.h"
+#include "MantidAPI/MatrixWorkspace_fwd.h"
+
+// Qt
+#include <QWidget>
+#include <QDialog>
+#include <QString>
+
+// STL
+#include <vector>
+#include <map>
+#include <set>
+#include <string>
+
+#endif // MANTIDQT_CUSTOMINTERFACES_PRECOMPILEDHEADER_H_
\ No newline at end of file
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSAddFiles.cpp b/qt/scientific_interfaces/ISISSANS/SANSAddFiles.cpp
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/src/SANSAddFiles.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSAddFiles.cpp
index 179631a96d62c4be1285d911b8a7b9ec7515bc14..c3f4fc1fea8ba3ad1a92b44b6fd4a9c966e4d415 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSAddFiles.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSAddFiles.cpp
@@ -1,6 +1,6 @@
-#include "MantidQtCustomInterfaces/SANSAddFiles.h"
-#include "MantidQtCustomInterfaces/SANSRunWindow.h"
-#include "MantidQtAPI/ManageUserDirectories.h"
+#include "SANSAddFiles.h"
+#include "SANSRunWindow.h"
+#include "MantidQtWidgets/Common/ManageUserDirectories.h"
#include "MantidKernel/ConfigService.h"
#include "MantidAPI/FileProperty.h"
#include "MantidKernel/ArrayProperty.h"
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSAddFiles.h b/qt/scientific_interfaces/ISISSANS/SANSAddFiles.h
similarity index 97%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSAddFiles.h
rename to qt/scientific_interfaces/ISISSANS/SANSAddFiles.h
index e584a338330fffe85047e7780922756c45768e47..ade2aa1a84760c3201204154db4e3f691453416d 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSAddFiles.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSAddFiles.h
@@ -2,8 +2,8 @@
#define MANTIDQTCUSTOMINTERFACES_SANSADDFILES_H_
#include "ui_SANSRunWindow.h"
-#include "MantidQtCustomInterfaces/SANSConstants.h"
-#include "MantidQtAPI/UserSubWindow.h"
+#include "SANSConstants.h"
+#include "MantidQtWidgets/Common/UserSubWindow.h"
#include "MantidKernel/ConfigService.h"
#include <Poco/NObserver.h>
#include <QString>
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionSettings.cpp b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.cpp
similarity index 95%
rename from qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionSettings.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.cpp
index 0458c653e9edd2db74fd662bf0051b69037595a7..166e9994666008145fd71103331835b405c4cb54 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionSettings.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.cpp
@@ -1,4 +1,4 @@
-#include "MantidQtCustomInterfaces/SANSBackgroundCorrectionSettings.h"
+#include "SANSBackgroundCorrectionSettings.h"
namespace MantidQt {
namespace CustomInterfaces {
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionSettings.h b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.h
similarity index 94%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionSettings.h
rename to qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.h
index 0614b447a70fa43feb53019c0e3a41882796fe7b..627f3a734a785c44d6c171e70696d60c165213da 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionSettings.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionSettings.h
@@ -2,7 +2,7 @@
#define MANTIDQT_CUSTOMINTERFACES_SANSBACKGROUNDCORRECTIONSETTINGS_H_
#include "MantidKernel/System.h"
-#include "MantidQtCustomInterfaces/DllConfig.h"
+#include "DllConfig.h"
#include <QString>
#include <boost/optional.hpp>
@@ -33,7 +33,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
File change history is stored at: <https://github.com/mantidproject/mantid>
Code Documentation is available at: <http://doxygen.mantidproject.org>
*/
-class MANTIDQT_CUSTOMINTERFACES_DLL SANSBackgroundCorrectionSettings {
+class MANTIDQT_ISISSANS_DLL SANSBackgroundCorrectionSettings {
public:
SANSBackgroundCorrectionSettings(QString runNumber, bool useMean, bool useMon,
QString monNumber);
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionWidget.cpp b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.cpp
similarity index 98%
rename from qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionWidget.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.cpp
index 7ffdc7dcf2bb1fc7583afa0b119b18114db03324..268a811227ec5b28a942a4f312f5e5af5e3592db 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSBackgroundCorrectionWidget.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.cpp
@@ -1,6 +1,6 @@
#include "MantidKernel/Logger.h"
-#include "MantidQtCustomInterfaces/SANSBackgroundCorrectionSettings.h"
-#include "MantidQtCustomInterfaces/SANSBackgroundCorrectionWidget.h"
+#include "SANSBackgroundCorrectionSettings.h"
+#include "SANSBackgroundCorrectionWidget.h"
namespace {
bool convertQtInt(int state) { return state == 2 ? true : false; }
}
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionWidget.h b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.h
similarity index 95%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionWidget.h
rename to qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.h
index bf1244eafd04cf6d32d66be8dc41dacd5601cdab..afd4e57f18e8f150ef5162820a64b00fac94053d 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionWidget.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.h
@@ -2,7 +2,7 @@
#define MANTIDQT_CUSTOMINTERFACES_SANSBACKGROUNDCORRECTIONWIDGET_H_
#include "MantidKernel/System.h"
-#include "MantidQtCustomInterfaces/DllConfig.h"
+#include "DllConfig.h"
#include "ui_SANSBackgroundCorrectionWidget.h"
#include <QWidget>
@@ -36,7 +36,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
File change history is stored at: <https://github.com/mantidproject/mantid>
Code Documentation is available at: <http://doxygen.mantidproject.org>
*/
-class MANTIDQT_CUSTOMINTERFACES_DLL SANSBackgroundCorrectionWidget
+class MANTIDQT_ISISSANS_DLL SANSBackgroundCorrectionWidget
: public QWidget {
Q_OBJECT
public:
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionWidget.ui b/qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.ui
similarity index 100%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSBackgroundCorrectionWidget.ui
rename to qt/scientific_interfaces/ISISSANS/SANSBackgroundCorrectionWidget.ui
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSConstants.cpp b/qt/scientific_interfaces/ISISSANS/SANSConstants.cpp
similarity index 98%
rename from qt/scientific_interfaces/ISISSANS/src/SANSConstants.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSConstants.cpp
index 33f3a8c9253ea355cf6e0a0b56402b0ff132c603..94c760014200461c6047b1712bdb55201c6f136b 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSConstants.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSConstants.cpp
@@ -1,4 +1,4 @@
-#include "MantidQtCustomInterfaces/SANSConstants.h"
+#include "SANSConstants.h"
#include <limits>
namespace MantidQt {
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSConstants.h b/qt/scientific_interfaces/ISISSANS/SANSConstants.h
similarity index 100%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSConstants.h
rename to qt/scientific_interfaces/ISISSANS/SANSConstants.h
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSDiagnostics.cpp b/qt/scientific_interfaces/ISISSANS/SANSDiagnostics.cpp
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/src/SANSDiagnostics.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSDiagnostics.cpp
index 56a518d9ba79e0eebce34a8819a16c259a97717f..e1f69e042e5e7ba2a81cb7007436a3651cc8b770 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSDiagnostics.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSDiagnostics.cpp
@@ -1,4 +1,4 @@
-#include "MantidQtCustomInterfaces/SANSDiagnostics.h"
+#include "SANSDiagnostics.h"
#include "MantidAPI/MatrixWorkspace.h"
#include "MantidKernel/UserStringParser.h"
#include "MantidKernel/EmptyValues.h"
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSDiagnostics.h b/qt/scientific_interfaces/ISISSANS/SANSDiagnostics.h
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSDiagnostics.h
rename to qt/scientific_interfaces/ISISSANS/SANSDiagnostics.h
index ea1016b11826599a5bc5f80d3a2f197ef90fbff6..349d1e85b99474d351633daa165b7e1ac0892f5b 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSDiagnostics.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSDiagnostics.h
@@ -2,7 +2,7 @@
#define MANTIDQTCUSTOMINTERFACES_SANSDIAGNOSTICS_H_
#include "ui_SANSRunWindow.h"
-#include "MantidQtAPI/UserSubWindow.h"
+#include "MantidQtWidgets/Common/UserSubWindow.h"
#include "MantidAPI/Workspace_fwd.h"
#include "MantidAPI/MatrixWorkspace_fwd.h"
#include "MantidGeometry/IDetector.h"
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSEventSlicing.cpp b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.cpp
similarity index 98%
rename from qt/scientific_interfaces/ISISSANS/src/SANSEventSlicing.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSEventSlicing.cpp
index a7cda3c46d8b5765dc1278862936c843bbd2e3d0..32423e21fc7846095ad29fdd9d9ec3a544c2d05d 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSEventSlicing.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.cpp
@@ -1,4 +1,4 @@
-#include "MantidQtCustomInterfaces/SANSEventSlicing.h"
+#include "SANSEventSlicing.h"
#include "MantidAPI/AlgorithmManager.h"
#include "ui_SANSEventSlicing.h"
#include <QSettings>
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.h b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.h
similarity index 96%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.h
rename to qt/scientific_interfaces/ISISSANS/SANSEventSlicing.h
index a026b261b9e17d9f81df24af87c4ea255bd7cd59..3b7f190b1c317229f220b2fb6563407155c1b0cd 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.h
@@ -2,7 +2,7 @@
#define MANTIDQTCUSTOMINTERFACES_SANSEVENTSLICING_H_
#include "ui_SANSEventSlicing.h"
-#include "MantidQtAPI/UserSubWindow.h"
+#include "MantidQtWidgets/Common/UserSubWindow.h"
#include <QString>
namespace MantidQt {
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.ui b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.ui
similarity index 98%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.ui
rename to qt/scientific_interfaces/ISISSANS/SANSEventSlicing.ui
index 35dd6727ceda7cad6010ecfbdef64cef8e535675..10391ce263ccb67af3923f5a286237eadd704910 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSEventSlicing.ui
+++ b/qt/scientific_interfaces/ISISSANS/SANSEventSlicing.ui
@@ -221,7 +221,7 @@
<customwidget>
<class>MantidQt::MantidWidgets::WorkspaceSelector</class>
<extends>QComboBox</extends>
- <header>MantidQtMantidWidgets/WorkspaceSelector.h</header>
+ <header>MantidQtWidgets/Common/WorkspaceSelector.h</header>
</customwidget>
</customwidgets>
<resources/>
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSPlotSpecial.cpp b/qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.cpp
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/src/SANSPlotSpecial.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.cpp
index 4c3cbbf8c3075f1bcb4fdfe68300cbc966932828..4ad1284f4b97e6cf26b3c94954b60403e8af0c57 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSPlotSpecial.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.cpp
@@ -1,11 +1,11 @@
-#include "MantidQtCustomInterfaces/SANSPlotSpecial.h"
+#include "SANSPlotSpecial.h"
#include "MantidAPI/AlgorithmManager.h"
#include "MantidAPI/IFunction.h"
#include "MantidAPI/MatrixWorkspace.h"
#include "MantidKernel/PhysicalConstants.h"
-#include "MantidQtMantidWidgets/RangeSelector.h"
+#include "MantidQtWidgets/Common/RangeSelector.h"
#include "qwt_plot_curve.h"
#include <QLineEdit>
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSPlotSpecial.h b/qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.h
similarity index 100%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSPlotSpecial.h
rename to qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.h
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSPlotSpecial.ui b/qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.ui
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSPlotSpecial.ui
rename to qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.ui
index 00d7bb1372a4037883d0361748601ce7c47d5e79..c5ca037a215fef4cd0d04e04e5ccc690e5f30fef 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSPlotSpecial.ui
+++ b/qt/scientific_interfaces/ISISSANS/SANSPlotSpecial.ui
@@ -403,7 +403,7 @@
<customwidget>
<class>MantidQt::MantidWidgets::WorkspaceSelector</class>
<extends>QComboBox</extends>
- <header>MantidQtMantidWidgets/WorkspaceSelector.h</header>
+ <header>MantidQtWidgets/Common/WorkspaceSelector.h</header>
</customwidget>
</customwidgets>
<resources/>
diff --git a/qt/scientific_interfaces/ISISSANS/src/SANSRunWindow.cpp b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.cpp
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/src/SANSRunWindow.cpp
rename to qt/scientific_interfaces/ISISSANS/SANSRunWindow.cpp
index 7e975d5c44693d2672349edf7487640ea83d6230..b66230ab5af02c101efc8adc5e1c11cae4b0f52f 100644
--- a/qt/scientific_interfaces/ISISSANS/src/SANSRunWindow.cpp
+++ b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.cpp
@@ -1,4 +1,4 @@
-#include "MantidQtCustomInterfaces/SANSRunWindow.h"
+#include "SANSRunWindow.h"
#include "MantidAPI/AnalysisDataService.h"
#include "MantidAPI/DetectorInfo.h"
@@ -20,11 +20,11 @@
#include "MantidKernel/PropertyWithValue.h"
#include "MantidKernel/V3D.h"
-#include "MantidQtAPI/ManageUserDirectories.h"
-#include "MantidQtAPI/MantidDesktopServices.h"
-#include "MantidQtCustomInterfaces/SANSAddFiles.h"
-#include "MantidQtCustomInterfaces/SANSBackgroundCorrectionSettings.h"
-#include "MantidQtCustomInterfaces/SANSEventSlicing.h"
+#include "MantidQtWidgets/Common/ManageUserDirectories.h"
+#include "MantidQtWidgets/Common/MantidDesktopServices.h"
+#include "SANSAddFiles.h"
+#include "SANSBackgroundCorrectionSettings.h"
+#include "SANSEventSlicing.h"
#include <QClipboard>
#include <QFileDialog>
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.h b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.h
similarity index 98%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.h
rename to qt/scientific_interfaces/ISISSANS/SANSRunWindow.h
index ba47352591484ba4973aedb24cbc14684185d106..7b2e2921e3362ee55b9c620bbbfe081a32a9e849 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.h
+++ b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.h
@@ -4,12 +4,12 @@
//----------------------
// Includes
//----------------------
-#include "MantidQtAPI/UserSubWindow.h"
-#include "MantidQtCustomInterfaces/SANSAddFiles.h"
-#include "MantidQtCustomInterfaces/SANSConstants.h"
-#include "MantidQtCustomInterfaces/SANSDiagnostics.h"
-#include "MantidQtCustomInterfaces/SANSPlotSpecial.h"
-#include "MantidQtMantidWidgets/SaveWorkspaces.h"
+#include "MantidQtWidgets/Common/UserSubWindow.h"
+#include "SANSAddFiles.h"
+#include "SANSConstants.h"
+#include "SANSDiagnostics.h"
+#include "SANSPlotSpecial.h"
+#include "MantidQtWidgets/Common/SaveWorkspaces.h"
#include "ui_SANSRunWindow.h"
#include "MantidAPI/AnalysisDataService.h"
diff --git a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.ui b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.ui
similarity index 99%
rename from qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.ui
rename to qt/scientific_interfaces/ISISSANS/SANSRunWindow.ui
index 3e7227a7cb26fca93f1c16eefb704ea9c16440b3..42847d3c15d92e4d71a0b5b335ff3c2d7b45203b 100644
--- a/qt/scientific_interfaces/ISISSANS/inc/ISISSANS/SANSRunWindow.ui
+++ b/qt/scientific_interfaces/ISISSANS/SANSRunWindow.ui
@@ -4684,17 +4684,17 @@ p, li { white-space: pre-wrap; }
<customwidget>
<class>MantidQt::API::MWRunFiles</class>
<extends>QWidget</extends>
- <header>MantidQtAPI/MWRunFiles.h</header>
+ <header>MantidQtWidgets/Common/MWRunFiles.h</header>
</customwidget>
<customwidget>
<class>MantidQt::MantidWidgets::MessageDisplay</class>
<extends>QWidget</extends>
- <header>MantidQtMantidWidgets/MessageDisplay.h</header>
+ <header>MantidQtWidgets/Common/MessageDisplay.h</header>
</customwidget>
<customwidget>
<class>MantidQt::CustomInterfaces::SANSBackgroundCorrectionWidget</class>
<extends>QWidget</extends>
- <header>MantidQtCustomInterfaces/SANSBackgroundCorrectionWidget.h</header>
+ <header>SANSBackgroundCorrectionWidget.h</header>
<container>1</container>
</customwidget>
</customwidgets>
diff --git a/qt/scientific_interfaces/MultiDatasetFit/CMakeLists.txt b/qt/scientific_interfaces/MultiDatasetFit/CMakeLists.txt
index 02ab52716fa10f18b44da25d0e5b7142225cfe3c..ae1b85fd54e3414be7b57a9d29bd70b6546aeda7 100644
--- a/qt/scientific_interfaces/MultiDatasetFit/CMakeLists.txt
+++ b/qt/scientific_interfaces/MultiDatasetFit/CMakeLists.txt
@@ -46,10 +46,9 @@ set ( UI_FILES
include_directories ( ../../qt/widgets/common/inc )
qt4_wrap_cpp ( MOCCED_FILES ${MOC_FILES} OPTIONS ${extra_options} )
+qt4_add_resources ( RES_FILES_MULTIDATASETFIT ../icons/CustomInterfacesIcons.qrc )
-#qt4_add_resources ( RES_FILES icons/CustomInterfacesIcons.qrc )
-
-set ( ALL_SRC ${SRC_FILES} ${MOCCED_FILES} )#${RES_FILES})
+set ( ALL_SRC ${SRC_FILES} ${MOCCED_FILES} ${RES_FILES_MULTIDATASETFIT})
qt4_wrap_ui ( UI_HDRS ${UI_FILES} )
include_directories ( ${CMAKE_CURRENT_BINARY_DIR} )
diff --git a/qt/scientific_interfaces/Muon/CMakeLists.txt b/qt/scientific_interfaces/Muon/CMakeLists.txt
index 4584cd1c233e19ff2d43570aeccb018c6c0e907d..ae13681da1b3df7114bea9e32d37486f35fb0b29 100644
--- a/qt/scientific_interfaces/Muon/CMakeLists.txt
+++ b/qt/scientific_interfaces/Muon/CMakeLists.txt
@@ -90,9 +90,7 @@ include_directories ( ../../qt/widgets/common/inc )
qt4_wrap_cpp ( MOCCED_FILES ${MOC_FILES} OPTIONS ${extra_options} )
-#qt4_add_resources ( RES_FILES icons/CustomInterfacesIcons.qrc )
-
-set ( ALL_SRC ${SRC_FILES} ${MOCCED_FILES} )#${RES_FILES})
+set ( ALL_SRC ${SRC_FILES} ${MOCCED_FILES} )
qt4_wrap_ui ( UI_HDRS ${UI_FILES} )
include_directories ( ${CMAKE_CURRENT_BINARY_DIR} )